Wall clock time and date at job start Tue Mar 31 2020 21:12:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 111.00333 * 2 1 4 4 C 1.46900 * 111.00046 * 123.95737 * 2 1 3 5 5 C 1.53007 * 109.47325 * 163.89297 * 4 2 1 6 6 H 1.09001 * 109.46885 * 62.36186 * 5 4 2 7 7 C 1.52996 * 109.47277 * 182.36609 * 5 4 2 8 8 O 1.42897 * 109.47034 * 54.99906 * 7 5 4 9 9 N 1.46902 * 109.47041 * 302.36626 * 5 4 2 10 10 C 1.46891 * 111.00018 * 154.99604 * 9 5 4 11 11 C 1.53002 * 109.47246 * 179.97438 * 10 9 5 12 12 H 1.08996 * 109.47162 * 60.00514 * 11 10 9 13 13 O 1.42894 * 109.47138 * 300.00354 * 11 10 9 14 14 C 1.53006 * 109.47255 * 180.02562 * 11 10 9 15 15 O 1.42894 * 109.47178 * 185.00071 * 14 11 10 16 16 C 1.35674 * 117.00181 * 180.02562 * 15 14 11 17 17 C 1.39317 * 119.81397 * 359.72368 * 16 15 14 18 18 C 1.36440 * 120.17966 * 179.75929 * 17 16 15 19 19 C 1.40837 * 119.81399 * 0.51558 * 18 17 16 20 20 C 1.41213 * 120.17975 * 179.71569 * 19 18 17 21 21 H 1.08005 * 119.99593 * 29.12096 * 20 19 18 22 22 C 1.39892 * 120.00174 * 209.11733 * 20 19 18 23 23 N 1.30879 * 119.99650 * 14.13164 * 22 20 19 24 24 Si 1.86800 * 119.99737 * 194.13502 * 22 20 19 25 25 H 1.48497 * 109.47332 * 60.00263 * 24 22 20 26 26 H 1.48508 * 109.46780 * 179.97438 * 24 22 20 27 27 H 1.48491 * 109.47446 * 299.99601 * 24 22 20 28 28 C 1.40836 * 119.63810 * 359.74198 * 19 18 17 29 29 C 1.36428 * 119.81242 * 359.97438 * 28 19 18 30 30 H 1.09003 * 109.46895 * 300.76453 * 1 2 3 31 31 H 1.09002 * 109.47217 * 60.75735 * 1 2 3 32 32 H 1.09000 * 109.47146 * 180.76888 * 1 2 3 33 33 H 1.09002 * 109.47163 * 183.95627 * 3 2 1 34 34 H 1.09002 * 109.47056 * 303.95666 * 3 2 1 35 35 H 1.09000 * 109.46551 * 63.96020 * 3 2 1 36 36 H 1.08996 * 109.47319 * 43.89259 * 4 2 1 37 37 H 1.09004 * 109.47322 * 283.89157 * 4 2 1 38 38 H 1.08997 * 109.47273 * 174.99888 * 7 5 4 39 39 H 1.09004 * 109.47290 * 295.00166 * 7 5 4 40 40 H 0.96697 * 114.00054 * 180.02562 * 8 7 5 41 41 H 1.00900 * 111.00005 * 278.95478 * 9 5 4 42 42 H 1.09004 * 109.47195 * 60.00206 * 10 9 5 43 43 H 1.09001 * 109.47570 * 300.00449 * 10 9 5 44 44 H 0.96706 * 114.00200 * 299.99747 * 13 11 10 45 45 H 1.08995 * 109.47376 * 305.00461 * 14 11 10 46 46 H 1.09004 * 109.46891 * 65.00108 * 14 11 10 47 47 H 1.08000 * 119.91018 * 0.02562 * 17 16 15 48 48 H 1.08001 * 120.09160 * 180.25158 * 18 17 16 49 49 H 0.97002 * 119.99158 * 179.97438 * 23 22 20 50 50 H 1.08001 * 120.08758 * 179.97438 * 28 19 18 51 51 H 1.08006 * 119.90506 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 3.4721 -1.0866 0.8970 6 1 4.0400 -0.1582 0.8353 7 6 4.0049 -1.9346 2.0536 8 8 3.1875 -3.0964 2.2083 9 7 3.6128 -1.8312 -0.3615 10 6 4.9547 -1.6524 -0.9317 11 6 5.0630 -2.4414 -2.2381 12 1 4.3168 -2.0784 -2.9447 13 8 4.8372 -3.8280 -1.9772 14 6 6.4610 -2.2556 -2.8317 15 8 6.5256 -2.8958 -4.1076 16 6 7.7057 -2.8251 -4.7732 17 6 8.7809 -2.1442 -4.2064 18 6 9.9726 -2.0726 -4.8669 19 6 10.1106 -2.6802 -6.1300 20 6 11.3387 -2.6057 -6.8232 21 1 12.2652 -2.5298 -6.2735 22 6 11.3551 -2.6304 -8.2218 23 7 10.2468 -2.4440 -8.8926 24 14 12.9588 -2.9294 -9.1318 25 1 13.5092 -4.2527 -8.7433 26 1 12.7086 -2.9083 -10.5955 27 1 13.9332 -1.8654 -8.7805 28 6 9.0170 -3.3619 -6.6982 29 6 7.8341 -3.4291 -6.0219 30 1 -0.3633 0.5257 0.8831 31 1 -0.3634 0.5020 -0.8967 32 1 -0.3633 -1.0276 0.0138 33 1 3.0829 1.3432 -0.0709 34 1 1.5899 1.9164 -0.8524 35 1 1.7045 1.8722 0.9234 36 1 1.4343 -1.6947 1.2411 37 1 1.8953 -0.1774 2.0495 38 1 5.0300 -2.2373 1.8401 39 1 3.9828 -1.3497 2.9732 40 1 3.4673 -3.6814 2.9257 41 1 3.4039 -2.8092 -0.2282 42 1 5.7011 -2.0158 -0.2253 43 1 5.1272 -0.5946 -1.1303 44 1 5.4660 -4.2187 -1.3549 45 1 6.6680 -1.1919 -2.9480 46 1 7.2006 -2.6989 -2.1649 47 1 8.6722 -1.6754 -3.2395 48 1 10.8064 -1.5479 -4.4244 49 1 10.2583 -2.4608 -9.8624 50 1 9.1147 -3.8300 -7.6666 51 1 6.9943 -3.9511 -6.4565 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579354292.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:42 Heat of formation + Delta-G solvation = -109.434523 kcal Electronic energy + Delta-G solvation = -28998.604688 eV Core-core repulsion = 24898.208471 eV Total energy + Delta-G solvation = -4100.396217 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.33883 -38.79201 -37.48792 -36.88041 -36.07086 -34.74701 -33.25661 -31.34366 -29.91929 -29.16063 -28.59507 -27.77982 -26.64995 -25.19739 -24.27829 -22.52417 -21.86538 -20.81038 -20.59325 -20.39568 -18.00397 -17.31754 -17.12294 -16.41131 -16.37024 -16.13641 -15.60862 -15.37858 -15.20622 -14.98337 -14.78273 -14.33265 -14.09762 -13.90759 -13.89302 -13.60492 -13.10116 -12.83638 -12.56463 -12.47315 -12.26948 -12.20438 -12.15106 -12.09076 -11.88308 -11.75226 -11.48022 -11.37191 -11.16071 -11.11476 -10.94261 -10.74624 -10.62082 -10.47678 -9.96074 -9.87267 -9.79336 -9.29484 -9.03551 -8.45811 -8.38714 -7.63030 -6.95591 -6.66374 -4.24389 2.81655 2.95928 3.10322 3.12918 3.23212 3.51416 3.73902 3.85789 3.98798 4.35797 4.47914 4.55114 4.66785 4.67642 4.88465 4.91643 4.97211 5.04203 5.09262 5.10831 5.19848 5.21970 5.32197 5.36653 5.42795 5.46996 5.54393 5.65767 5.68267 5.69001 5.70057 5.73865 6.07007 6.15788 6.25054 6.73870 6.77866 6.87102 6.97056 6.99175 7.13112 7.15089 7.21630 7.38093 7.47114 7.58236 7.70262 7.79846 8.03155 8.22368 8.47578 8.67814 8.93244 9.00846 10.29594 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023295 B = 0.001769 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.671900 B =15822.793381 C =16189.894959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.525 5.525 3 C 0.025 3.975 4 C 0.072 3.928 5 C 0.095 3.905 6 H 0.086 0.914 7 C 0.042 3.958 8 O -0.566 6.566 9 N -0.653 5.653 10 C 0.033 3.967 11 C 0.114 3.886 12 H 0.115 0.885 13 O -0.548 6.548 14 C 0.040 3.960 15 O -0.316 6.316 16 C -0.002 4.002 17 C -0.172 4.172 18 C -0.194 4.194 19 C 0.088 3.912 20 C -0.467 4.467 21 H 0.075 0.925 22 C 0.074 3.926 23 N -0.805 5.805 24 Si 0.909 3.091 25 H -0.265 1.265 26 H -0.279 1.279 27 H -0.267 1.267 28 C -0.126 4.126 29 C -0.122 4.122 30 H 0.017 0.983 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.018 0.982 36 H 0.083 0.917 37 H 0.030 0.970 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.380 0.620 41 H 0.356 0.644 42 H 0.027 0.973 43 H 0.081 0.919 44 H 0.367 0.633 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.092 0.908 48 H 0.094 0.906 49 H 0.280 0.720 50 H 0.123 0.877 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.735 3.610 21.138 25.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.248 5.248 3 C -0.123 4.123 4 C -0.056 4.056 5 C -0.016 4.016 6 H 0.104 0.896 7 C -0.038 4.038 8 O -0.371 6.371 9 N -0.285 5.285 10 C -0.097 4.097 11 C 0.055 3.945 12 H 0.133 0.867 13 O -0.352 6.352 14 C -0.038 4.038 15 O -0.232 6.232 16 C -0.046 4.046 17 C -0.191 4.191 18 C -0.214 4.214 19 C 0.086 3.914 20 C -0.498 4.498 21 H 0.093 0.907 22 C -0.142 4.142 23 N -0.432 5.432 24 Si 0.734 3.266 25 H -0.190 1.190 26 H -0.204 1.204 27 H -0.192 1.192 28 C -0.145 4.145 29 C -0.141 4.141 30 H 0.036 0.964 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.036 0.964 36 H 0.102 0.898 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.227 0.773 41 H 0.176 0.824 42 H 0.045 0.955 43 H 0.099 0.901 44 H 0.213 0.787 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.110 0.890 48 H 0.112 0.888 49 H 0.090 0.910 50 H 0.141 0.859 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.938 4.178 19.062 24.576 hybrid contribution 2.106 -0.135 1.942 2.868 sum -12.831 4.043 21.004 24.943 Atomic orbital electron populations 1.22372 0.87618 1.01977 1.00153 1.61785 1.07065 1.12987 1.42976 1.22402 1.00907 0.89057 0.99933 1.21997 0.95136 0.98223 0.90293 1.21696 0.96679 0.96087 0.87152 0.89648 1.22954 0.93770 0.87821 0.99238 1.86475 1.56628 1.35874 1.58137 1.60219 1.25633 1.17160 1.25525 1.22555 0.90243 1.01264 0.95648 1.21942 0.96038 0.81537 0.95008 0.86680 1.86670 1.57468 1.23308 1.67742 1.23112 0.97042 0.97594 0.86037 1.85900 1.33235 1.73845 1.30212 1.18651 0.84752 1.06625 0.94534 1.20402 0.94695 1.04331 0.99625 1.20602 0.96185 1.05798 0.98793 1.17593 0.93475 0.89402 0.90947 1.19385 0.93693 1.45762 0.90957 0.90709 1.25847 0.97777 0.92469 0.98136 1.69808 1.28359 1.36136 1.08897 0.86366 0.82200 0.79955 0.78117 1.18982 1.20429 1.19198 1.20943 0.92401 1.00930 1.00269 1.19857 0.98305 1.02926 0.92963 0.96406 0.91450 0.91386 0.91534 0.91477 0.96374 0.89814 0.95195 0.93480 0.93456 0.77341 0.82362 0.95502 0.90082 0.78727 0.92406 0.93255 0.88968 0.88758 0.90950 0.85893 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.58 60.06 0.58 0.80 16 2 N -0.53 -4.97 4.76 -251.25 -1.20 -6.16 16 3 C 0.03 0.21 9.38 60.07 0.56 0.77 16 4 C 0.07 0.62 4.49 -3.82 -0.02 0.60 16 5 C 0.10 0.78 2.38 -67.71 -0.16 0.62 16 6 H 0.09 0.67 6.53 -51.93 -0.34 0.33 16 7 C 0.04 0.28 6.72 37.16 0.25 0.53 16 8 O -0.57 -3.93 12.10 -35.23 -0.43 -4.35 16 9 N -0.65 -6.59 6.03 -106.73 -0.64 -7.23 16 10 C 0.03 0.33 5.19 -3.83 -0.02 0.31 16 11 C 0.11 1.49 3.52 -26.73 -0.09 1.40 16 12 H 0.12 1.71 8.14 -51.93 -0.42 1.29 16 13 O -0.55 -7.47 12.64 -40.11 -0.51 -7.98 16 14 C 0.04 0.61 4.36 37.16 0.16 0.78 16 15 O -0.32 -6.62 10.09 -23.60 -0.24 -6.86 16 16 C 0.00 -0.06 6.71 -38.78 -0.26 -0.32 16 17 C -0.17 -3.90 8.96 -39.83 -0.36 -4.26 16 18 C -0.19 -4.80 9.74 -39.25 -0.38 -5.18 16 19 C 0.09 2.38 5.53 -106.80 -0.59 1.79 16 20 C -0.47 -12.53 9.03 -37.83 -0.34 -12.88 16 21 H 0.07 1.92 7.88 -52.48 -0.41 1.50 16 22 C 0.07 1.88 5.18 -17.34 -0.09 1.79 16 23 N -0.81 -21.24 11.05 55.54 0.61 -20.63 16 24 Si 0.91 18.98 29.58 -169.99 -5.03 13.95 16 25 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 26 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 27 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 28 C -0.13 -3.34 8.60 -39.25 -0.34 -3.68 16 29 C -0.12 -3.01 9.92 -39.84 -0.40 -3.41 16 30 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.56 7.98 -51.93 -0.41 0.14 16 33 H 0.07 0.54 6.76 -51.93 -0.35 0.19 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.02 0.13 8.11 -51.93 -0.42 -0.29 16 36 H 0.08 0.82 7.22 -51.93 -0.38 0.44 16 37 H 0.03 0.24 8.03 -51.93 -0.42 -0.18 16 38 H 0.05 0.30 7.35 -51.93 -0.38 -0.08 16 39 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.38 1.12 9.12 45.56 0.42 1.53 16 41 H 0.36 3.96 7.33 -39.29 -0.29 3.67 16 42 H 0.03 0.24 7.36 -51.93 -0.38 -0.14 16 43 H 0.08 0.79 8.06 -51.93 -0.42 0.38 16 44 H 0.37 3.73 9.05 45.56 0.41 4.14 16 45 H 0.06 0.87 7.64 -51.93 -0.40 0.47 16 46 H 0.05 0.72 7.66 -51.93 -0.40 0.32 16 47 H 0.09 1.80 6.27 -52.49 -0.33 1.47 16 48 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 49 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 50 H 0.12 3.33 6.37 -52.49 -0.33 3.00 16 51 H 0.10 2.27 8.06 -52.48 -0.42 1.85 16 LS Contribution 410.69 15.07 6.19 6.19 Total: -1.00 -31.29 410.69 -9.66 -40.95 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -6.92 Total: 12.47 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -1.50 Total: -20.35 kcal Atomic # 7 Polarization: -32.80 SS G_CDS: -1.23 Total: -34.03 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -1.17 Total: -19.19 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.29 -9.66 -40.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579354292.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.485 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds