Wall clock time and date at job start Tue Mar 31 2020 21:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 110.99893 * 2 1 4 4 C 1.46903 * 111.00417 * 123.95333 * 2 1 3 5 5 C 1.53000 * 109.47002 * 75.48102 * 4 2 1 6 6 H 1.08995 * 109.47340 * 296.81525 * 5 4 2 7 7 C 1.52997 * 109.47044 * 176.81531 * 5 4 2 8 8 O 1.42900 * 109.47342 * 304.99919 * 7 5 4 9 9 N 1.46904 * 109.47071 * 56.81761 * 5 4 2 10 10 C 1.46901 * 110.99958 * 204.99979 * 9 5 4 11 11 C 1.52999 * 109.47350 * 179.97438 * 10 9 5 12 12 H 1.09005 * 109.46617 * 304.99899 * 11 10 9 13 13 O 1.42895 * 109.46754 * 64.99588 * 11 10 9 14 14 C 1.52990 * 109.47307 * 184.99970 * 11 10 9 15 15 O 1.42898 * 109.47293 * 174.99896 * 14 11 10 16 16 C 1.35673 * 117.00280 * 180.02562 * 15 14 11 17 17 C 1.39313 * 119.81889 * 180.02562 * 16 15 14 18 18 C 1.36436 * 120.18481 * 180.27496 * 17 16 15 19 19 C 1.40837 * 119.81149 * 359.50186 * 18 17 16 20 20 C 1.41212 * 120.17818 * 180.23040 * 19 18 17 21 21 H 1.08000 * 119.99937 * 209.31124 * 20 19 18 22 22 C 1.39888 * 120.00334 * 29.31301 * 20 19 18 23 23 N 1.30881 * 119.99959 * 10.71612 * 22 20 19 24 24 Si 1.86803 * 120.00226 * 190.71549 * 22 20 19 25 25 H 1.48497 * 109.47152 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47256 * 120.00235 * 24 22 20 27 27 H 1.48504 * 109.47044 * 239.99660 * 24 22 20 28 28 C 1.40831 * 119.64305 * 0.49112 * 19 18 17 29 29 C 1.36448 * 119.80777 * 359.76128 * 28 19 18 30 30 H 1.09005 * 109.46776 * 296.04132 * 1 2 3 31 31 H 1.08994 * 109.47596 * 56.04904 * 1 2 3 32 32 H 1.09011 * 109.47020 * 176.05002 * 1 2 3 33 33 H 1.09003 * 109.47031 * 188.78651 * 3 2 1 34 34 H 1.09003 * 109.46797 * 308.77792 * 3 2 1 35 35 H 1.08998 * 109.47695 * 68.78095 * 3 2 1 36 36 H 1.08997 * 109.46924 * 315.48658 * 4 2 1 37 37 H 1.08995 * 109.47255 * 195.47942 * 4 2 1 38 38 H 1.09001 * 109.47139 * 65.00541 * 7 5 4 39 39 H 1.09003 * 109.47173 * 185.00031 * 7 5 4 40 40 H 0.96698 * 114.00098 * 179.97438 * 8 7 5 41 41 H 1.00894 * 111.00310 * 81.04267 * 9 5 4 42 42 H 1.09004 * 109.46880 * 59.99823 * 10 9 5 43 43 H 1.08997 * 109.46857 * 300.00120 * 10 9 5 44 44 H 0.96703 * 114.00468 * 60.00571 * 13 11 10 45 45 H 1.09003 * 109.47251 * 54.99841 * 14 11 10 46 46 H 1.08999 * 109.47299 * 295.00060 * 14 11 10 47 47 H 1.08003 * 119.90971 * 0.02562 * 17 16 15 48 48 H 1.08000 * 120.09651 * 179.72286 * 18 17 16 49 49 H 0.97001 * 120.00450 * 180.02562 * 23 22 20 50 50 H 1.07991 * 120.10059 * 179.73471 * 28 19 18 51 51 H 1.07994 * 119.90480 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.8407 -2.2626 0.8601 6 1 0.7823 -2.5090 0.7761 7 6 2.4606 -3.0610 2.0086 8 8 3.8176 -2.6533 2.1942 9 7 2.5235 -2.6009 -0.3959 10 6 1.9420 -3.8056 -1.0032 11 6 2.6770 -4.1252 -2.3065 12 1 2.6524 -3.2536 -2.9606 13 8 4.0343 -4.4653 -2.0167 14 6 1.9931 -5.3040 -3.0017 15 8 2.6062 -5.5282 -4.2729 16 6 2.1135 -6.5454 -5.0236 17 6 2.6680 -6.8161 -6.2726 18 6 2.1748 -7.8336 -7.0361 19 6 1.1090 -8.6178 -6.5537 20 6 0.5957 -9.6759 -7.3354 21 1 -0.4414 -9.9626 -7.2419 22 6 1.4304 -10.3527 -8.2310 23 7 2.7236 -10.1539 -8.1981 24 14 0.6993 -11.5404 -9.4738 25 1 -0.7754 -11.5872 -9.3056 26 1 1.0270 -11.0827 -10.8480 27 1 1.2653 -12.8958 -9.2555 28 6 0.5542 -8.3375 -5.2900 29 6 1.0558 -7.3130 -4.5412 30 1 -0.3633 0.4512 0.9234 31 1 -0.3634 0.5739 -0.8524 32 1 -0.3634 -1.0253 -0.0708 33 1 3.0738 1.3467 -0.1570 34 1 1.5247 1.9412 -0.8012 35 1 1.7784 1.8440 0.9579 36 1 1.4416 -0.5045 2.0392 37 1 3.0503 -0.5297 1.2777 38 1 1.8977 -2.8778 2.9238 39 1 2.4301 -4.1242 1.7700 40 1 4.2740 -3.1189 2.9083 41 1 3.5155 -2.7126 -0.2495 42 1 0.8868 -3.6327 -1.2146 43 1 2.0420 -4.6442 -0.3142 44 1 4.1324 -5.2338 -1.4380 45 1 0.9359 -5.0790 -3.1429 46 1 2.0953 -6.1979 -2.3864 47 1 3.4880 -6.2164 -6.6393 48 1 2.6028 -8.0394 -8.0061 49 1 3.3024 -10.6230 -8.8193 50 1 -0.2660 -8.9313 -4.9148 51 1 0.6313 -7.0964 -3.5721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000579354293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:46 Heat of formation + Delta-G solvation = -109.345594 kcal Electronic energy + Delta-G solvation = -28992.276117 eV Core-core repulsion = 24891.883756 eV Total energy + Delta-G solvation = -4100.392361 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.32433 -38.78667 -37.48160 -36.87878 -36.06737 -34.76238 -33.24910 -31.34498 -29.91664 -29.14195 -28.58376 -27.77607 -26.64794 -25.19640 -24.27650 -22.51199 -21.87847 -20.82066 -20.59127 -20.38384 -17.99987 -17.31966 -17.10434 -16.41557 -16.36144 -16.13464 -15.59029 -15.37293 -15.22218 -14.97013 -14.76889 -14.33144 -14.09111 -13.90229 -13.86975 -13.60264 -13.09998 -12.83910 -12.58650 -12.49612 -12.28722 -12.20322 -12.15261 -12.07350 -11.87155 -11.72224 -11.47943 -11.34774 -11.16657 -11.15514 -10.92562 -10.74722 -10.57955 -10.47359 -9.94878 -9.87226 -9.76823 -9.28704 -9.06379 -8.46475 -8.38210 -7.62327 -6.93849 -6.64213 -4.25109 2.79845 2.96551 3.11300 3.16379 3.21605 3.52075 3.73851 3.86428 3.99268 4.35006 4.48701 4.56250 4.67530 4.68565 4.88989 4.92021 4.96601 5.04938 5.09808 5.10919 5.19314 5.22330 5.30657 5.37493 5.43545 5.48050 5.55126 5.65202 5.68448 5.69174 5.69718 5.73233 6.07485 6.15764 6.25455 6.74657 6.77928 6.87062 6.97533 6.99718 7.13864 7.15647 7.22621 7.38137 7.48879 7.58929 7.70959 7.80251 8.04242 8.23875 8.48336 8.68752 8.94268 9.01288 10.30908 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023755 B = 0.001764 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.441022 B =15871.270812 C =16178.577045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.525 5.525 3 C 0.027 3.973 4 C 0.072 3.928 5 C 0.096 3.904 6 H 0.085 0.915 7 C 0.042 3.958 8 O -0.566 6.566 9 N -0.653 5.653 10 C 0.033 3.967 11 C 0.114 3.886 12 H 0.116 0.884 13 O -0.549 6.549 14 C 0.040 3.960 15 O -0.316 6.316 16 C 0.000 4.000 17 C -0.123 4.123 18 C -0.124 4.124 19 C 0.085 3.915 20 C -0.465 4.465 21 H 0.075 0.925 22 C 0.071 3.929 23 N -0.809 5.809 24 Si 0.910 3.090 25 H -0.262 1.262 26 H -0.273 1.273 27 H -0.276 1.276 28 C -0.193 4.193 29 C -0.173 4.173 30 H 0.018 0.982 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.018 0.982 36 H 0.031 0.969 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.380 0.620 41 H 0.355 0.645 42 H 0.080 0.920 43 H 0.027 0.973 44 H 0.367 0.633 45 H 0.058 0.942 46 H 0.049 0.951 47 H 0.098 0.902 48 H 0.127 0.873 49 H 0.278 0.722 50 H 0.094 0.906 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.505 15.347 20.356 25.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.248 5.248 3 C -0.121 4.121 4 C -0.057 4.057 5 C -0.015 4.015 6 H 0.103 0.897 7 C -0.038 4.038 8 O -0.371 6.371 9 N -0.285 5.285 10 C -0.097 4.097 11 C 0.054 3.946 12 H 0.134 0.866 13 O -0.353 6.353 14 C -0.038 4.038 15 O -0.232 6.232 16 C -0.044 4.044 17 C -0.142 4.142 18 C -0.144 4.144 19 C 0.083 3.917 20 C -0.495 4.495 21 H 0.093 0.907 22 C -0.144 4.144 23 N -0.436 5.436 24 Si 0.735 3.265 25 H -0.186 1.186 26 H -0.199 1.199 27 H -0.201 1.201 28 C -0.213 4.213 29 C -0.192 4.192 30 H 0.036 0.964 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.049 0.951 37 H 0.101 0.899 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.227 0.773 41 H 0.176 0.824 42 H 0.099 0.901 43 H 0.045 0.955 44 H 0.214 0.786 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.117 0.883 48 H 0.145 0.855 49 H 0.089 0.911 50 H 0.112 0.888 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.394 16.516 18.476 24.821 hybrid contribution -0.577 -2.056 1.868 2.837 sum -1.971 14.460 20.344 25.037 Atomic orbital electron populations 1.22413 0.87971 1.02014 0.99919 1.61781 1.07046 1.12946 1.43023 1.22371 1.01157 0.88937 0.99630 1.21996 1.00931 0.92503 0.90249 1.21679 0.97901 0.94734 0.87219 0.89686 1.22954 0.83621 0.98060 0.99153 1.86473 1.24852 1.67024 1.58771 1.60243 1.08679 1.35164 1.24448 1.22562 0.99992 0.91624 0.95483 1.21946 0.81429 0.97063 0.94152 0.86611 1.86665 1.25420 1.51675 1.71566 1.23107 0.97161 0.97590 0.85905 1.85902 1.58640 1.50501 1.28153 1.18670 0.98941 0.93012 0.93751 1.19881 1.01170 1.00245 0.92916 1.21036 0.99546 0.93857 0.99931 1.17616 0.91769 0.91799 0.90507 1.19464 0.97375 1.14029 1.18662 0.90673 1.25855 0.94495 0.97127 0.96910 1.69804 1.03822 1.37258 1.32712 0.86240 0.80290 0.79729 0.80261 1.18625 1.19859 1.20138 1.20616 1.04253 1.00737 0.95654 1.20400 0.99390 0.99789 0.99636 0.96389 0.91479 0.91598 0.91274 0.91576 0.96379 0.95070 0.89861 0.93466 0.93481 0.77336 0.82424 0.90113 0.95454 0.78644 0.92405 0.93235 0.88339 0.85504 0.91109 0.88758 0.88962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.39 60.06 0.56 0.77 16 2 N -0.52 -4.92 4.72 -251.26 -1.18 -6.10 16 3 C 0.03 0.22 9.52 60.06 0.57 0.79 16 4 C 0.07 0.62 4.53 -3.82 -0.02 0.60 16 5 C 0.10 0.78 2.43 -67.71 -0.16 0.62 16 6 H 0.09 0.67 6.70 -51.93 -0.35 0.32 16 7 C 0.04 0.28 6.71 37.16 0.25 0.53 16 8 O -0.57 -3.98 12.09 -35.23 -0.43 -4.41 16 9 N -0.65 -6.60 6.02 -106.73 -0.64 -7.24 16 10 C 0.03 0.33 5.16 -3.82 -0.02 0.31 16 11 C 0.11 1.49 3.49 -26.74 -0.09 1.39 16 12 H 0.12 1.72 8.14 -51.93 -0.42 1.29 16 13 O -0.55 -7.58 12.82 -40.08 -0.51 -8.10 16 14 C 0.04 0.62 4.36 37.15 0.16 0.78 16 15 O -0.32 -6.63 10.09 -23.57 -0.24 -6.87 16 16 C 0.00 -0.01 6.71 -38.78 -0.26 -0.27 16 17 C -0.12 -3.06 9.92 -39.83 -0.40 -3.45 16 18 C -0.12 -3.30 8.60 -39.25 -0.34 -3.64 16 19 C 0.09 2.31 5.54 -106.80 -0.59 1.71 16 20 C -0.46 -12.48 9.05 -37.84 -0.34 -12.82 16 21 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 22 C 0.07 1.82 5.25 -17.34 -0.09 1.73 16 23 N -0.81 -21.34 10.87 55.54 0.60 -20.73 16 24 Si 0.91 19.03 29.57 -169.99 -5.03 14.01 16 25 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 26 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 27 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 28 C -0.19 -4.77 9.74 -39.25 -0.38 -5.16 16 29 C -0.17 -3.94 8.96 -39.83 -0.36 -4.30 16 30 H 0.02 0.13 8.09 -51.93 -0.42 -0.29 16 31 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16 32 H 0.07 0.52 6.94 -51.92 -0.36 0.16 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.50 8.04 -51.93 -0.42 0.08 16 35 H 0.02 0.13 8.13 -51.93 -0.42 -0.29 16 36 H 0.03 0.24 7.96 -51.93 -0.41 -0.17 16 37 H 0.08 0.81 7.25 -51.93 -0.38 0.44 16 38 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.05 0.30 7.35 -51.93 -0.38 -0.08 16 40 H 0.38 1.17 9.12 45.56 0.42 1.58 16 41 H 0.36 3.98 7.50 -39.29 -0.29 3.69 16 42 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 43 H 0.03 0.24 7.36 -51.93 -0.38 -0.14 16 44 H 0.37 3.84 9.05 45.56 0.41 4.25 16 45 H 0.06 0.86 7.64 -51.93 -0.40 0.46 16 46 H 0.05 0.73 7.65 -51.93 -0.40 0.34 16 47 H 0.10 2.28 8.06 -52.48 -0.42 1.86 16 48 H 0.13 3.45 6.25 -52.49 -0.33 3.12 16 49 H 0.28 6.68 8.30 -40.82 -0.34 6.35 16 50 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 51 H 0.09 1.80 6.27 -52.49 -0.33 1.47 16 LS Contribution 411.00 15.07 6.19 6.19 Total: -1.00 -31.33 411.00 -9.68 -41.01 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -6.94 Total: 12.64 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: -1.51 Total: -20.39 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: -1.22 Total: -34.08 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -1.18 Total: -19.37 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.33 -9.68 -41.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579354293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.339 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds