Wall clock time and date at job start Tue Mar 31 2020 21:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46898 * 110.99893 * 2 1 4 4 C 1.46903 * 111.00417 * 123.95333 * 2 1 3 5 5 C 1.53000 * 109.47002 * 75.48102 * 4 2 1 6 6 H 1.08995 * 109.47340 * 296.81525 * 5 4 2 7 7 C 1.52997 * 109.47044 * 176.81531 * 5 4 2 8 8 O 1.42900 * 109.47342 * 304.99919 * 7 5 4 9 9 N 1.46904 * 109.47071 * 56.81761 * 5 4 2 10 10 C 1.46901 * 110.99958 * 204.99979 * 9 5 4 11 11 C 1.52999 * 109.47350 * 179.97438 * 10 9 5 12 12 H 1.09005 * 109.46617 * 304.99899 * 11 10 9 13 13 O 1.42895 * 109.46754 * 64.99588 * 11 10 9 14 14 C 1.52990 * 109.47307 * 184.99970 * 11 10 9 15 15 O 1.42898 * 109.47293 * 174.99896 * 14 11 10 16 16 C 1.35673 * 117.00280 * 180.02562 * 15 14 11 17 17 C 1.39313 * 119.81889 * 180.02562 * 16 15 14 18 18 C 1.36436 * 120.18481 * 180.27496 * 17 16 15 19 19 C 1.40837 * 119.81149 * 359.50186 * 18 17 16 20 20 C 1.41212 * 120.17818 * 180.23040 * 19 18 17 21 21 H 1.08000 * 119.99937 * 209.31124 * 20 19 18 22 22 C 1.39888 * 120.00334 * 29.31301 * 20 19 18 23 23 N 1.30881 * 119.99959 * 10.71612 * 22 20 19 24 24 Si 1.86803 * 120.00226 * 190.71549 * 22 20 19 25 25 H 1.48497 * 109.47152 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47256 * 120.00235 * 24 22 20 27 27 H 1.48504 * 109.47044 * 239.99660 * 24 22 20 28 28 C 1.40831 * 119.64305 * 0.49112 * 19 18 17 29 29 C 1.36448 * 119.80777 * 359.76128 * 28 19 18 30 30 H 1.09005 * 109.46776 * 296.04132 * 1 2 3 31 31 H 1.08994 * 109.47596 * 56.04904 * 1 2 3 32 32 H 1.09011 * 109.47020 * 176.05002 * 1 2 3 33 33 H 1.09003 * 109.47031 * 188.78651 * 3 2 1 34 34 H 1.09003 * 109.46797 * 308.77792 * 3 2 1 35 35 H 1.08998 * 109.47695 * 68.78095 * 3 2 1 36 36 H 1.08997 * 109.46924 * 315.48658 * 4 2 1 37 37 H 1.08995 * 109.47255 * 195.47942 * 4 2 1 38 38 H 1.09001 * 109.47139 * 65.00541 * 7 5 4 39 39 H 1.09003 * 109.47173 * 185.00031 * 7 5 4 40 40 H 0.96698 * 114.00098 * 179.97438 * 8 7 5 41 41 H 1.00894 * 111.00310 * 81.04267 * 9 5 4 42 42 H 1.09004 * 109.46880 * 59.99823 * 10 9 5 43 43 H 1.08997 * 109.46857 * 300.00120 * 10 9 5 44 44 H 0.96703 * 114.00468 * 60.00571 * 13 11 10 45 45 H 1.09003 * 109.47251 * 54.99841 * 14 11 10 46 46 H 1.08999 * 109.47299 * 295.00060 * 14 11 10 47 47 H 1.08003 * 119.90971 * 0.02562 * 17 16 15 48 48 H 1.08000 * 120.09651 * 179.72286 * 18 17 16 49 49 H 0.97001 * 120.00450 * 180.02562 * 23 22 20 50 50 H 1.07991 * 120.10059 * 179.73471 * 28 19 18 51 51 H 1.07994 * 119.90480 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.8407 -2.2626 0.8601 6 1 0.7823 -2.5090 0.7761 7 6 2.4606 -3.0610 2.0086 8 8 3.8176 -2.6533 2.1942 9 7 2.5235 -2.6009 -0.3959 10 6 1.9420 -3.8056 -1.0032 11 6 2.6770 -4.1252 -2.3065 12 1 2.6524 -3.2536 -2.9606 13 8 4.0343 -4.4653 -2.0167 14 6 1.9931 -5.3040 -3.0017 15 8 2.6062 -5.5282 -4.2729 16 6 2.1135 -6.5454 -5.0236 17 6 2.6680 -6.8161 -6.2726 18 6 2.1748 -7.8336 -7.0361 19 6 1.1090 -8.6178 -6.5537 20 6 0.5957 -9.6759 -7.3354 21 1 -0.4414 -9.9626 -7.2419 22 6 1.4304 -10.3527 -8.2310 23 7 2.7236 -10.1539 -8.1981 24 14 0.6993 -11.5404 -9.4738 25 1 -0.7754 -11.5872 -9.3056 26 1 1.0270 -11.0827 -10.8480 27 1 1.2653 -12.8958 -9.2555 28 6 0.5542 -8.3375 -5.2900 29 6 1.0558 -7.3130 -4.5412 30 1 -0.3633 0.4512 0.9234 31 1 -0.3634 0.5739 -0.8524 32 1 -0.3634 -1.0253 -0.0708 33 1 3.0738 1.3467 -0.1570 34 1 1.5247 1.9412 -0.8012 35 1 1.7784 1.8440 0.9579 36 1 1.4416 -0.5045 2.0392 37 1 3.0503 -0.5297 1.2777 38 1 1.8977 -2.8778 2.9238 39 1 2.4301 -4.1242 1.7700 40 1 4.2740 -3.1189 2.9083 41 1 3.5155 -2.7126 -0.2495 42 1 0.8868 -3.6327 -1.2146 43 1 2.0420 -4.6442 -0.3142 44 1 4.1324 -5.2338 -1.4380 45 1 0.9359 -5.0790 -3.1429 46 1 2.0953 -6.1979 -2.3864 47 1 3.4880 -6.2164 -6.6393 48 1 2.6028 -8.0394 -8.0061 49 1 3.3024 -10.6230 -8.8193 50 1 -0.2660 -8.9313 -4.9148 51 1 0.6313 -7.0964 -3.5721 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000579354293.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:44 Heat of formation + Delta-G solvation = -135.122315 kcal Electronic energy + Delta-G solvation = -28993.393880 eV Core-core repulsion = 24891.883756 eV Total energy + Delta-G solvation = -4101.510123 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.68217 -39.76793 -38.72838 -37.67966 -37.40543 -35.51805 -35.13472 -32.34167 -31.60787 -30.92373 -29.79200 -28.39564 -27.22435 -26.82343 -25.60566 -23.33658 -22.99823 -22.43682 -22.21795 -21.19480 -19.23794 -18.81522 -18.38614 -17.56790 -17.44322 -17.06065 -16.82524 -16.35436 -16.04680 -15.98567 -15.76033 -15.68906 -15.35024 -15.14436 -14.86189 -14.72952 -14.39833 -14.04605 -13.91903 -13.74966 -13.54714 -13.27189 -13.13748 -13.06592 -12.94804 -12.81760 -12.76267 -12.59658 -12.49978 -12.38814 -12.09284 -11.88605 -11.80641 -11.64400 -11.56586 -11.20084 -11.01581 -10.92871 -10.85987 -9.55955 -9.15718 -9.04598 -8.85199 -8.53926 -6.24695 0.94895 1.02826 1.40571 1.51086 1.55439 2.24544 2.41172 2.76886 3.04785 3.25051 3.50309 3.54705 3.69601 3.97035 4.02500 4.04634 4.05469 4.18747 4.28943 4.31229 4.36243 4.36612 4.40203 4.47079 4.50138 4.51875 4.63644 4.68901 4.76399 4.82806 4.85022 4.87721 5.01711 5.06706 5.06971 5.09428 5.15320 5.21965 5.30723 5.59237 5.65749 5.87975 6.07552 6.10638 6.23484 6.27307 6.32088 6.57191 6.58735 6.79948 6.84678 6.87862 6.97519 7.10569 8.43231 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.023755 B = 0.001764 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.441022 B =15871.270812 C =16178.577045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.545 5.545 3 C 0.029 3.971 4 C 0.077 3.923 5 C 0.095 3.905 6 H 0.092 0.908 7 C 0.047 3.953 8 O -0.584 6.584 9 N -0.664 5.664 10 C 0.046 3.954 11 C 0.124 3.876 12 H 0.094 0.906 13 O -0.567 6.567 14 C 0.032 3.968 15 O -0.332 6.332 16 C 0.009 3.991 17 C -0.140 4.140 18 C -0.143 4.143 19 C 0.051 3.949 20 C -0.498 4.498 21 H 0.076 0.924 22 C 0.028 3.972 23 N -0.842 5.842 24 Si 0.985 3.015 25 H -0.258 1.258 26 H -0.267 1.267 27 H -0.268 1.268 28 C -0.200 4.200 29 C -0.169 4.169 30 H 0.026 0.974 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.068 0.932 35 H 0.026 0.974 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.051 0.949 40 H 0.396 0.604 41 H 0.348 0.652 42 H 0.087 0.913 43 H 0.046 0.954 44 H 0.382 0.618 45 H 0.071 0.929 46 H 0.065 0.935 47 H 0.105 0.895 48 H 0.110 0.890 49 H 0.285 0.715 50 H 0.108 0.892 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.634 15.232 22.162 27.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.269 5.269 3 C -0.120 4.120 4 C -0.052 4.052 5 C -0.016 4.016 6 H 0.110 0.890 7 C -0.033 4.033 8 O -0.392 6.392 9 N -0.296 5.296 10 C -0.084 4.084 11 C 0.065 3.935 12 H 0.112 0.888 13 O -0.373 6.373 14 C -0.044 4.044 15 O -0.248 6.248 16 C -0.035 4.035 17 C -0.159 4.159 18 C -0.163 4.163 19 C 0.049 3.951 20 C -0.529 4.529 21 H 0.094 0.906 22 C -0.184 4.184 23 N -0.470 5.470 24 Si 0.807 3.193 25 H -0.181 1.181 26 H -0.192 1.192 27 H -0.193 1.193 28 C -0.220 4.220 29 C -0.187 4.187 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.044 0.956 36 H 0.058 0.942 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.245 0.755 41 H 0.167 0.833 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.231 0.769 45 H 0.089 0.911 46 H 0.083 0.917 47 H 0.123 0.877 48 H 0.127 0.873 49 H 0.095 0.905 50 H 0.126 0.874 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.522 16.412 20.329 26.248 hybrid contribution -0.162 -1.870 1.463 2.380 sum -2.684 14.541 21.792 26.335 Atomic orbital electron populations 1.22398 0.87234 1.02147 1.00326 1.61794 1.07895 1.13535 1.43662 1.22349 1.00697 0.88737 1.00182 1.21934 1.00044 0.92788 0.90410 1.21731 0.98171 0.94634 0.87063 0.89041 1.22877 0.83571 0.97763 0.99066 1.86438 1.25265 1.67705 1.59817 1.60209 1.08324 1.35243 1.25832 1.22401 0.99585 0.92362 0.94013 1.21812 0.81420 0.95124 0.95165 0.88774 1.86631 1.25886 1.52660 1.72160 1.23495 0.97935 0.99239 0.83779 1.85897 1.59290 1.49358 1.30231 1.18736 0.98329 0.93086 0.93374 1.20036 1.01702 1.00185 0.93942 1.20935 1.00448 0.95051 0.99840 1.17977 0.92677 0.92548 0.91912 1.19716 0.97746 1.15010 1.20410 0.90604 1.26743 0.94674 0.98695 0.98337 1.69877 1.05107 1.38415 1.33634 0.85108 0.79483 0.77316 0.77441 1.18114 1.19164 1.19303 1.20876 1.04508 1.01433 0.95134 1.20712 0.98655 0.98534 1.00832 0.95520 0.91584 0.91509 0.92014 0.91280 0.95579 0.94172 0.91386 0.91949 0.93060 0.75468 0.83277 0.89459 0.93625 0.76929 0.91137 0.91722 0.87654 0.87252 0.90465 0.87373 0.85129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.39 127.69 1.20 1.59 16 2 N -0.55 -9.60 4.72 -948.84 -4.47 -14.07 16 3 C 0.03 0.44 9.52 127.69 1.22 1.66 16 4 C 0.08 1.21 4.53 86.30 0.39 1.60 16 5 C 0.09 1.35 2.43 44.91 0.11 1.46 16 6 H 0.09 1.19 6.70 -2.39 -0.02 1.17 16 7 C 0.05 0.50 6.71 71.98 0.48 0.99 16 8 O -0.58 -7.18 12.09 -148.98 -1.80 -8.98 16 9 N -0.66 -12.30 6.02 -491.57 -2.96 -15.26 16 10 C 0.05 0.81 5.16 86.30 0.44 1.25 16 11 C 0.12 3.04 3.49 30.59 0.11 3.15 16 12 H 0.09 2.73 8.14 -2.38 -0.02 2.71 16 13 O -0.57 -14.82 12.82 -144.34 -1.85 -16.67 16 14 C 0.03 0.91 4.36 71.98 0.31 1.22 16 15 O -0.33 -13.48 10.09 -85.26 -0.86 -14.34 16 16 C 0.01 0.40 6.71 22.79 0.15 0.55 16 17 C -0.14 -7.06 9.92 22.11 0.22 -6.84 16 18 C -0.14 -7.86 8.60 22.48 0.19 -7.67 16 19 C 0.05 2.81 5.54 -21.28 -0.12 2.69 16 20 C -0.50 -27.29 9.05 23.40 0.21 -27.08 16 21 H 0.08 3.98 7.87 -2.91 -0.02 3.95 16 22 C 0.03 1.43 5.25 85.23 0.45 1.87 16 23 N -0.84 -45.52 10.87 21.82 0.24 -45.29 16 24 Si 0.99 39.20 29.57 68.60 2.03 41.23 16 25 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 26 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 27 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 28 C -0.20 -9.79 9.74 22.49 0.22 -9.57 16 29 C -0.17 -7.37 8.96 22.11 0.20 -7.17 16 30 H 0.03 0.33 8.09 -2.38 -0.02 0.31 16 31 H 0.07 0.95 8.07 -2.39 -0.02 0.93 16 32 H 0.07 0.94 6.94 -2.38 -0.02 0.92 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.00 8.04 -2.39 -0.02 0.98 16 35 H 0.03 0.35 8.13 -2.39 -0.02 0.33 16 36 H 0.04 0.55 7.96 -2.39 -0.02 0.53 16 37 H 0.07 1.28 7.25 -2.39 -0.02 1.26 16 38 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.05 0.51 7.35 -2.39 -0.02 0.49 16 40 H 0.40 1.69 9.12 -74.06 -0.68 1.01 16 41 H 0.35 7.35 7.50 -89.70 -0.67 6.68 16 42 H 0.09 1.44 8.06 -2.39 -0.02 1.42 16 43 H 0.05 0.65 7.36 -2.39 -0.02 0.63 16 44 H 0.38 7.20 9.05 -74.05 -0.67 6.53 16 45 H 0.07 1.87 7.64 -2.39 -0.02 1.85 16 46 H 0.06 1.69 7.65 -2.39 -0.02 1.67 16 47 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 48 H 0.11 6.26 6.25 -2.91 -0.02 6.24 16 49 H 0.28 13.96 8.30 -92.71 -0.77 13.19 16 50 H 0.11 4.87 8.06 -2.92 -0.02 4.85 16 51 H 0.13 4.62 6.27 -2.91 -0.02 4.60 16 Total: -1.00 -68.28 411.00 -4.96 -73.24 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -1.07 Total: 40.42 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 5.79 Total: -40.29 kcal Atomic # 7 Polarization: -67.42 SS G_CDS: -7.19 Total: -74.62 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -4.51 Total: -39.99 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Total: -68.28 -4.96 -73.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000579354293.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.881 kcal (2) G-P(sol) polarization free energy of solvation -68.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds