Wall clock time and date at job start Tue Mar 31 2020 21:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46967 * 65.00094 * 4 3 2 6 6 C 1.46763 * 124.34615 * 269.72217 * 5 4 3 7 7 C 1.54658 * 105.38012 * 162.85725 * 6 5 4 8 8 H 1.09002 * 111.19273 * 267.59740 * 7 6 5 9 9 C 1.50693 * 110.85574 * 143.79171 * 7 6 5 10 10 O 1.21281 * 120.00348 * 6.32595 * 9 7 6 11 11 N 1.34783 * 120.00245 * 186.33078 * 9 7 6 12 12 C 1.46925 * 120.63040 * 359.72018 * 11 9 7 13 13 C 1.52759 * 109.00638 * 233.58643 * 12 11 9 14 14 C 1.53040 * 109.38379 * 305.58236 * 13 12 11 15 15 C 1.52999 * 109.45952 * 181.26206 * 14 13 12 16 16 C 1.50696 * 109.47050 * 64.93404 * 15 14 13 17 17 H 1.08000 * 120.00300 * 0.02562 * 16 15 14 18 18 C 1.37879 * 119.99820 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00268 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99756 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47105 * 60.00439 * 20 18 16 22 22 H 1.48507 * 109.46813 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47185 * 299.99974 * 20 18 16 24 24 C 1.53035 * 109.53389 * 61.24430 * 14 13 12 25 25 C 1.46928 * 120.63116 * 179.97438 * 11 9 7 26 26 C 1.54636 * 101.68657 * 25.76610 * 7 6 5 27 27 C 1.34420 * 124.34930 * 90.02454 * 5 4 3 28 28 O 1.21282 * 124.94158 * 0.38759 * 27 5 4 29 29 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 31 31 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 32 32 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 33 33 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 34 34 H 1.09004 * 109.47113 * 184.99738 * 4 3 2 35 35 H 1.08993 * 109.47646 * 305.00069 * 4 3 2 36 36 H 1.08994 * 110.24641 * 281.98224 * 6 5 4 37 37 H 1.08995 * 110.24630 * 43.98301 * 6 5 4 38 38 H 1.09004 * 109.58454 * 353.41962 * 12 11 9 39 39 H 1.08995 * 109.58826 * 113.84289 * 12 11 9 40 40 H 1.09001 * 109.56414 * 185.54736 * 13 12 11 41 41 H 1.08999 * 109.36196 * 65.49796 * 13 12 11 42 42 H 1.08995 * 109.44975 * 301.23049 * 14 13 12 43 43 H 1.09002 * 109.46950 * 184.93261 * 15 14 13 44 44 H 1.09000 * 109.47216 * 304.93555 * 15 14 13 45 45 H 0.97001 * 120.00098 * 180.02562 * 19 18 16 46 46 H 1.09004 * 109.50069 * 178.68272 * 24 14 13 47 47 H 1.08999 * 109.50529 * 58.58898 * 24 14 13 48 48 H 1.08994 * 109.58679 * 246.15310 * 25 11 9 49 49 H 1.09002 * 109.58460 * 6.43755 * 25 11 9 50 50 H 1.09000 * 110.48687 * 216.31211 * 26 7 6 51 51 H 1.08996 * 110.48260 * 93.66513 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2509 6 6 4.1447 -0.8811 -1.4443 7 6 4.1818 -1.0884 -2.9765 8 1 3.1873 -1.2993 -3.3698 9 6 5.1485 -2.1836 -3.3464 10 8 5.6807 -2.8417 -2.4778 11 7 5.4217 -2.4319 -4.6427 12 6 4.7804 -1.6473 -5.7065 13 6 4.1129 -2.6016 -6.6951 14 6 5.1432 -3.6162 -7.1961 15 6 4.4843 -4.5534 -8.2102 16 6 4.0726 -3.7665 -9.4277 17 1 4.2624 -2.7043 -9.4739 18 6 3.4546 -4.4029 -10.4833 19 7 3.2248 -5.6966 -10.4278 20 14 2.9450 -3.4276 -11.9928 21 1 4.1437 -2.7999 -12.6045 22 1 2.3064 -4.3375 -12.9776 23 1 1.9802 -2.3704 -11.5967 24 6 5.6726 -4.4336 -6.0155 25 6 6.3624 -3.4960 -5.0190 26 6 4.6903 0.2873 -3.4664 27 6 4.2851 1.2453 -2.3679 28 8 4.2442 2.4523 -2.4789 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.6886 1.8464 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 3.9785 2.1766 0.0902 35 1 3.8508 0.5686 0.8426 36 1 5.0785 -1.2160 -0.9929 37 1 3.3015 -1.4201 -1.0122 38 1 4.0283 -0.9886 -5.2720 39 1 5.5322 -1.0537 -6.2267 40 1 3.7191 -2.0358 -7.5394 41 1 3.2980 -3.1265 -6.1966 42 1 5.9698 -3.0891 -7.6725 43 1 5.1923 -5.3293 -8.5014 44 1 3.6046 -5.0142 -7.7609 45 1 2.7904 -6.1444 -11.1706 46 1 6.3890 -5.1718 -6.3761 47 1 4.8430 -4.9413 -5.5234 48 1 7.2456 -3.0560 -5.4821 49 1 6.6559 -4.0552 -4.1306 50 1 4.2096 0.5592 -4.4061 51 1 5.7742 0.2746 -3.5809 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581134387.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:29 Heat of formation + Delta-G solvation = -144.558264 kcal Electronic energy + Delta-G solvation = -30362.488298 eV Core-core repulsion = 26260.569001 eV Total energy + Delta-G solvation = -4101.919297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.07941 -40.72183 -38.81101 -38.75262 -37.25853 -35.73157 -34.62317 -33.78613 -32.06033 -30.37830 -29.69737 -28.73654 -27.26359 -26.48148 -24.76915 -24.13632 -23.81605 -22.78877 -21.16463 -20.51848 -19.85245 -18.46997 -18.35055 -18.09791 -17.47041 -17.24904 -16.79669 -16.52144 -16.44811 -16.21661 -16.05258 -15.48617 -15.26027 -15.00706 -14.85307 -14.62630 -14.59982 -14.27624 -14.22279 -13.88806 -13.68517 -13.39115 -13.29603 -13.07830 -12.94067 -12.87608 -12.72793 -12.52446 -12.45248 -12.39498 -12.26721 -12.06884 -12.03658 -11.73933 -11.30525 -11.18466 -11.06258 -10.81693 -10.69804 -10.60584 -10.48396 -9.77455 -9.59048 -8.14022 -6.23287 1.43703 1.45323 1.45491 1.52781 1.53858 1.83184 2.08707 2.44715 2.83304 3.12238 3.19961 3.30513 3.58157 3.84251 3.90905 4.02964 4.07386 4.11669 4.15555 4.18943 4.26255 4.33712 4.44542 4.49212 4.51268 4.54231 4.55947 4.58922 4.67582 4.72540 4.77044 4.80927 4.88043 4.90919 4.92471 4.93585 5.01958 5.15309 5.35599 5.37432 5.44263 5.47808 5.57861 5.62836 5.85972 5.93250 5.99686 6.20115 6.31535 6.42717 6.94143 7.05110 7.10860 7.45613 8.97703 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.013817 B = 0.002483 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.020807 B =11273.577228 C =11892.349836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.045 3.955 4 C 0.123 3.877 5 N -0.608 5.608 6 C 0.128 3.872 7 C -0.114 4.114 8 H 0.135 0.865 9 C 0.529 3.471 10 O -0.575 6.575 11 N -0.601 5.601 12 C 0.106 3.894 13 C -0.116 4.116 14 C -0.074 4.074 15 C 0.032 3.968 16 C -0.525 4.525 17 H 0.068 0.932 18 C -0.004 4.004 19 N -0.938 5.938 20 Si 0.958 3.042 21 H -0.268 1.268 22 H -0.291 1.291 23 H -0.264 1.264 24 C -0.122 4.122 25 C 0.119 3.881 26 C -0.140 4.140 27 C 0.516 3.484 28 O -0.572 6.572 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.040 0.960 32 H 0.040 0.960 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.047 0.953 42 H 0.063 0.937 43 H -0.016 1.016 44 H -0.016 1.016 45 H 0.260 0.740 46 H 0.069 0.931 47 H 0.047 0.953 48 H 0.082 0.918 49 H 0.083 0.917 50 H 0.131 0.869 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 14.133 21.539 25.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C -0.032 4.032 4 C 0.001 3.999 5 N -0.341 5.341 6 C 0.006 3.994 7 C -0.136 4.136 8 H 0.153 0.847 9 C 0.317 3.683 10 O -0.455 6.455 11 N -0.332 5.332 12 C -0.015 4.015 13 C -0.154 4.154 14 C -0.092 4.092 15 C -0.005 4.005 16 C -0.563 4.563 17 H 0.087 0.913 18 C -0.201 4.201 19 N -0.579 5.579 20 Si 0.783 3.217 21 H -0.193 1.193 22 H -0.217 1.217 23 H -0.189 1.189 24 C -0.160 4.160 25 C -0.003 4.003 26 C -0.180 4.180 27 C 0.304 3.696 28 O -0.452 6.452 29 H 0.111 0.889 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.127 0.873 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.081 0.919 43 H 0.002 0.998 44 H 0.003 0.997 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.065 0.935 48 H 0.101 0.899 49 H 0.102 0.898 50 H 0.149 0.851 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.567 14.138 21.923 26.093 hybrid contribution -0.729 -0.172 -1.217 1.429 sum -1.297 13.966 20.707 25.010 Atomic orbital electron populations 1.22864 0.79872 1.03564 1.00543 1.87852 1.21021 1.28068 1.95551 1.23024 0.93863 0.85075 1.01247 1.21636 0.92503 1.00187 0.85547 1.48343 1.65398 1.07966 1.12380 1.21952 1.03882 0.79824 0.93786 1.22206 1.00797 0.93094 0.97460 0.84730 1.20390 0.81761 0.84242 0.81893 1.90678 1.53982 1.51883 1.48926 1.48178 1.44081 1.35300 1.05688 1.22061 0.98123 0.93314 0.88045 1.21736 0.97677 0.97445 0.98582 1.21038 0.97619 0.96248 0.94308 1.19021 0.93808 0.94185 0.93482 1.21658 1.37407 0.95478 1.01766 0.91343 1.25954 0.96362 0.95749 1.01998 1.70105 1.44249 1.10489 1.33085 0.85608 0.78815 0.78452 0.78823 1.19268 1.21697 1.18890 1.21912 1.00045 0.98062 0.96000 1.21586 0.91549 0.88705 0.98464 1.22522 1.04836 0.91388 0.99276 1.21120 0.75598 0.87856 0.84987 1.90709 1.55941 1.15111 1.83415 0.88898 0.92797 0.94168 0.94213 0.90053 0.88106 0.87673 0.90082 0.88544 0.87271 0.89323 0.90550 0.93371 0.91860 0.99782 0.99713 0.93123 0.91260 0.93452 0.89940 0.89828 0.85108 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -6.53 9.92 -148.98 -1.48 -8.01 16 3 C 0.05 0.62 6.28 71.98 0.45 1.08 16 4 C 0.12 1.73 6.32 86.38 0.55 2.27 16 5 N -0.61 -10.90 2.88 -817.64 -2.35 -13.26 16 6 C 0.13 2.25 6.59 86.89 0.57 2.83 16 7 C -0.11 -1.97 2.58 -10.42 -0.03 -1.99 16 8 H 0.13 1.98 7.82 -2.39 -0.02 1.96 16 9 C 0.53 12.38 7.01 87.65 0.61 13.00 16 10 O -0.57 -17.15 14.98 -3.03 -0.05 -17.20 16 11 N -0.60 -14.09 2.98 -819.66 -2.44 -16.53 16 12 C 0.11 2.23 5.62 86.22 0.48 2.71 16 13 C -0.12 -3.53 5.17 30.53 0.16 -3.37 16 14 C -0.07 -2.65 2.10 -10.77 -0.02 -2.68 16 15 C 0.03 1.59 4.45 29.85 0.13 1.73 16 16 C -0.53 -27.84 8.39 25.60 0.21 -27.63 16 17 H 0.07 3.38 7.06 -2.91 -0.02 3.36 16 18 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 19 N -0.94 -56.31 13.29 21.45 0.28 -56.02 16 20 Si 0.96 42.77 29.54 68.60 2.03 44.80 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 24 C -0.12 -3.83 5.36 30.68 0.16 -3.66 16 25 C 0.12 3.06 6.44 86.38 0.56 3.62 16 26 C -0.14 -2.27 5.17 30.59 0.16 -2.11 16 27 C 0.52 10.99 8.02 87.90 0.71 11.70 16 28 O -0.57 -16.30 17.59 -3.03 -0.05 -16.36 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 1.39 7.92 -2.38 -0.02 1.37 16 35 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.60 7.07 -2.39 -0.02 1.58 16 37 H 0.10 1.68 7.47 -2.39 -0.02 1.66 16 38 H 0.11 1.69 4.39 -2.38 -0.01 1.68 16 39 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.08 2.48 6.91 -2.39 -0.02 2.47 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 43 H -0.02 -0.89 8.14 -2.39 -0.02 -0.91 16 44 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 45 H 0.26 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 49 H 0.08 2.25 7.00 -2.39 -0.02 2.23 16 50 H 0.13 1.70 6.68 -2.39 -0.02 1.68 16 51 H 0.12 1.80 7.89 -2.39 -0.02 1.78 16 Total: -1.00 -72.74 400.96 3.27 -69.47 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.91 Total: 13.79 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 6.42 Total: -0.68 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -4.51 Total: -85.81 kcal Atomic # 8 Polarization: -39.99 SS G_CDS: -1.58 Total: -41.57 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -72.74 3.27 -69.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581134387.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.083 kcal (2) G-P(sol) polarization free energy of solvation -72.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds