Wall clock time and date at job start Tue Mar 31 2020 21:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35994 * 117.00082 * 2 1 4 4 C 1.38564 * 120.07035 * 0.02562 * 3 2 1 5 5 C 1.38243 * 120.00088 * 179.97438 * 4 3 2 6 6 C 1.50698 * 119.93164 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47078 * 89.99996 * 6 5 4 8 8 N 1.46901 * 109.47380 * 180.02562 * 7 6 5 9 9 C 1.46899 * 111.00076 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.46798 * 179.97438 * 9 8 7 11 11 H 1.09000 * 109.47555 * 304.99556 * 10 9 8 12 12 O 1.42901 * 109.47612 * 65.00079 * 10 9 8 13 13 C 1.53000 * 109.47000 * 185.00066 * 10 9 8 14 14 N 1.46905 * 109.47114 * 180.02562 * 13 10 9 15 15 C 1.46900 * 110.99850 * 293.94896 * 14 13 10 16 16 C 1.46906 * 111.00051 * 169.99929 * 14 13 10 17 17 C 1.50699 * 109.47140 * 189.99841 * 16 14 13 18 18 H 1.08003 * 119.99962 * 359.97438 * 17 16 14 19 19 C 1.37873 * 119.99861 * 180.02562 * 17 16 14 20 20 N 1.31522 * 120.00244 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99980 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.46950 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47074 * 119.99839 * 21 19 17 24 24 H 1.48505 * 109.46997 * 239.99833 * 21 19 17 25 25 C 1.38256 * 120.14094 * 0.27487 * 5 4 3 26 26 C 1.38244 * 120.15148 * 359.45341 * 25 5 4 27 27 C 1.38564 * 119.99202 * 0.54263 * 26 25 5 28 28 O 1.35995 * 120.07119 * 179.70440 * 27 26 25 29 29 H 1.09006 * 109.47314 * 299.99833 * 1 2 3 30 30 H 1.08997 * 109.47681 * 59.99838 * 1 2 3 31 31 H 1.09005 * 109.47177 * 180.02562 * 1 2 3 32 32 H 1.07996 * 120.00304 * 359.97438 * 4 3 2 33 33 H 1.09005 * 109.47046 * 330.00064 * 6 5 4 34 34 H 1.09001 * 109.47388 * 210.00493 * 6 5 4 35 35 H 1.09005 * 109.47126 * 60.00117 * 7 6 5 36 36 H 1.09001 * 109.47417 * 300.00480 * 7 6 5 37 37 H 1.00896 * 110.99720 * 56.04063 * 8 7 6 38 38 H 1.08995 * 109.47186 * 60.00137 * 9 8 7 39 39 H 1.08998 * 109.47052 * 299.99451 * 9 8 7 40 40 H 0.96697 * 113.99735 * 59.99435 * 12 10 9 41 41 H 1.08997 * 109.47704 * 60.00204 * 13 10 9 42 42 H 1.09000 * 109.47058 * 299.99530 * 13 10 9 43 43 H 1.08996 * 109.47030 * 296.04770 * 15 14 13 44 44 H 1.08999 * 109.46702 * 56.04909 * 15 14 13 45 45 H 1.08996 * 109.46890 * 176.04778 * 15 14 13 46 46 H 1.09004 * 109.47040 * 309.99779 * 16 14 13 47 47 H 1.09000 * 109.47033 * 69.99731 * 16 14 13 48 48 H 0.96992 * 120.00038 * 179.97438 * 20 19 17 49 49 H 1.08004 * 119.92682 * 179.70079 * 25 5 4 50 50 H 1.07998 * 120.00347 * 180.25133 * 26 25 5 51 51 H 0.96696 * 114.00474 * 270.02601 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 0.0005 5 6 1.9223 3.6057 0.0011 6 6 1.1016 4.8696 0.0011 7 6 0.8233 5.2970 1.4435 8 7 0.0227 6.5287 1.4436 9 6 -0.2640 6.9701 2.8151 10 6 -1.0969 8.2528 2.7742 11 1 -0.5801 9.0028 2.1754 12 8 -2.3721 7.9746 2.1923 13 6 -1.2900 8.7810 4.1971 14 7 -2.0903 10.0123 4.1580 15 6 -1.3613 11.0927 3.4802 16 6 -2.4970 10.4191 5.5097 17 6 -3.5096 11.5313 5.4163 18 1 -3.8197 11.8995 4.4495 19 6 -4.0393 12.0795 6.5651 20 7 -3.6613 11.6315 7.7425 21 14 -5.2950 13.4576 6.4494 22 1 -5.5495 13.7767 5.0216 23 1 -6.5618 13.0285 7.0946 24 1 -4.7715 14.6636 7.1400 25 6 3.3029 3.6798 -0.0047 26 6 4.0603 2.5233 0.0004 27 6 3.4359 1.2864 0.0000 28 8 4.1795 0.1477 -0.0011 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 0.2146 2.3196 0.0005 33 1 0.1574 4.6897 -0.5132 34 1 1.6502 5.6592 -0.5124 35 1 1.7674 5.4768 1.9578 36 1 0.2746 4.5074 1.9571 37 1 -0.8292 6.4061 0.9172 38 1 0.6727 7.1622 3.3382 39 1 -0.8197 6.1922 3.3385 40 1 -2.8885 7.3142 2.6742 41 1 -0.3174 8.9934 4.6410 42 1 -1.8068 8.0312 4.7960 43 1 -0.4686 11.3437 4.0530 44 1 -1.0720 10.7650 2.4817 45 1 -2.0024 11.9708 3.4029 46 1 -2.9389 9.5679 6.0278 47 1 -1.6244 10.7676 6.0622 48 1 -4.0337 12.0174 8.5507 49 1 3.7907 4.6433 -0.0091 50 1 5.1386 2.5840 0.0001 51 1 4.3945 -0.1809 -0.8847 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591756684.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:49 Heat of formation + Delta-G solvation = -132.362365 kcal Electronic energy + Delta-G solvation = -28222.190411 eV Core-core repulsion = 24120.799968 eV Total energy + Delta-G solvation = -4101.390443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.42921 -39.65165 -38.87770 -38.23111 -37.37549 -36.17691 -34.61638 -33.17525 -31.28324 -31.00626 -29.39326 -28.77055 -27.93731 -26.92457 -25.13011 -23.60617 -23.33885 -22.69398 -22.08011 -21.68213 -19.61218 -18.57720 -18.30274 -17.70974 -17.33074 -17.19442 -16.92642 -16.73059 -16.36682 -16.20443 -15.93903 -15.80668 -15.39200 -15.22915 -15.02111 -14.95211 -14.59711 -14.43983 -13.90588 -13.82275 -13.66919 -13.32000 -13.20209 -13.06801 -12.87806 -12.77545 -12.66132 -12.55568 -12.51362 -12.36287 -12.13972 -12.02279 -11.91487 -11.86362 -11.58828 -11.54045 -11.38167 -10.71508 -10.62712 -9.77230 -9.40014 -9.08995 -8.96019 -8.21154 -6.31030 0.16278 0.36164 1.41004 1.41534 1.55683 2.28379 2.40225 2.56687 2.93568 3.11433 3.25634 3.42136 3.71193 3.78027 3.90390 4.01827 4.08926 4.14319 4.23100 4.26334 4.30038 4.33340 4.35800 4.40786 4.48491 4.57507 4.60190 4.63913 4.70144 4.70164 4.74273 4.81934 4.85741 4.99658 5.06826 5.12986 5.16821 5.17297 5.20234 5.30086 5.32695 5.60841 5.64988 5.72774 5.99135 6.05656 6.25597 6.32423 6.45984 6.63610 6.85526 6.86158 6.96564 7.38941 8.90024 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.026472 B = 0.001473 C = 0.001449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.467568 B =19005.139336 C =19319.213381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.086 3.914 4 C -0.195 4.195 5 C -0.051 4.051 6 C -0.071 4.071 7 C 0.069 3.931 8 N -0.688 5.688 9 C 0.039 3.961 10 C 0.129 3.871 11 H 0.096 0.904 12 O -0.559 6.559 13 C 0.023 3.977 14 N -0.538 5.538 15 C 0.041 3.959 16 C 0.206 3.794 17 C -0.523 4.523 18 H 0.061 0.939 19 C 0.000 4.000 20 N -0.935 5.935 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.278 1.278 24 H -0.278 1.278 25 C -0.139 4.139 26 C -0.108 4.108 27 C 0.050 3.950 28 O -0.503 6.503 29 H 0.059 0.941 30 H 0.067 0.933 31 H 0.117 0.883 32 H 0.144 0.856 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.028 0.972 37 H 0.350 0.650 38 H 0.080 0.920 39 H 0.040 0.960 40 H 0.379 0.621 41 H 0.032 0.968 42 H 0.067 0.933 43 H 0.009 0.991 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.004 0.996 47 H -0.040 1.040 48 H 0.264 0.736 49 H 0.146 0.854 50 H 0.151 0.849 51 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.471 -23.022 -19.946 33.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.040 3.960 4 C -0.213 4.213 5 C -0.052 4.052 6 C -0.109 4.109 7 C -0.060 4.060 8 N -0.320 5.320 9 C -0.091 4.091 10 C 0.069 3.931 11 H 0.114 0.886 12 O -0.365 6.365 13 C -0.106 4.106 14 N -0.262 5.262 15 C -0.107 4.107 16 C 0.080 3.920 17 C -0.561 4.561 18 H 0.080 0.920 19 C -0.197 4.197 20 N -0.576 5.576 21 Si 0.795 3.205 22 H -0.188 1.188 23 H -0.203 1.203 24 H -0.204 1.204 25 C -0.157 4.157 26 C -0.126 4.126 27 C 0.005 3.995 28 O -0.314 6.314 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.136 0.864 32 H 0.162 0.838 33 H 0.099 0.901 34 H 0.107 0.893 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.169 0.831 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.227 0.773 41 H 0.050 0.950 42 H 0.086 0.914 43 H 0.027 0.973 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.023 0.977 47 H -0.022 1.022 48 H 0.073 0.927 49 H 0.164 0.836 50 H 0.169 0.831 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 13.799 -22.392 -19.932 33.002 hybrid contribution -0.802 -0.267 1.331 1.576 sum 12.997 -22.659 -18.601 32.068 Atomic orbital electron populations 1.23336 0.76690 1.05523 1.02134 1.86110 1.23147 1.26470 1.88706 1.19675 0.92149 0.85345 0.98800 1.21240 1.00802 0.91143 1.08149 1.19798 0.94158 0.94263 0.97004 1.20508 0.99989 0.93799 0.96574 1.21884 0.97943 0.89705 0.96450 1.60342 1.25225 1.33100 1.13379 1.22485 1.00065 0.96087 0.90479 1.21776 0.83918 0.95643 0.91746 0.88574 1.86560 1.30136 1.64982 1.54775 1.22830 0.95987 0.93467 0.98346 1.61943 1.40589 1.04019 1.19615 1.22212 0.95525 0.94865 0.98080 1.19421 0.93315 0.94655 0.84636 1.21508 1.23660 1.18129 0.92797 0.92048 1.25921 0.99068 0.99938 0.94804 1.70089 1.45330 1.44056 0.98120 0.85316 0.78324 0.78356 0.78504 1.18824 1.20325 1.20383 1.21156 0.93065 0.98988 1.02489 1.21469 1.01543 0.90437 0.99131 1.18040 0.86474 0.87214 1.07795 1.84840 1.71731 1.39932 1.34948 0.92245 0.91462 0.86437 0.83832 0.90094 0.89300 0.91192 0.95367 0.83099 0.90128 0.94162 0.77320 0.95032 0.91449 0.97266 0.90423 0.92739 0.97748 1.02187 0.92698 0.83630 0.83094 0.74076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.29 16 2 O -0.33 -5.91 10.28 -79.61 -0.82 -6.73 16 3 C 0.09 1.56 6.70 22.57 0.15 1.71 16 4 C -0.19 -2.94 8.69 22.35 0.19 -2.74 16 5 C -0.05 -0.73 5.13 -19.86 -0.10 -0.83 16 6 C -0.07 -0.89 5.60 29.85 0.17 -0.73 16 7 C 0.07 1.05 5.67 86.30 0.49 1.54 16 8 N -0.69 -12.45 6.50 -513.90 -3.34 -15.79 16 9 C 0.04 0.80 5.36 86.30 0.46 1.26 16 10 C 0.13 3.42 3.08 30.59 0.09 3.52 16 11 H 0.10 2.73 6.47 -2.39 -0.02 2.71 16 12 O -0.56 -15.54 12.72 -148.98 -1.90 -17.44 16 13 C 0.02 0.78 4.62 86.30 0.40 1.18 16 14 N -0.54 -23.34 4.62 -927.03 -4.28 -27.63 16 15 C 0.04 1.64 9.16 127.69 1.17 2.81 16 16 C 0.21 11.12 4.72 85.56 0.40 11.52 16 17 C -0.52 -30.13 8.52 25.60 0.22 -29.91 16 18 H 0.06 3.51 7.10 -2.91 -0.02 3.49 16 19 C 0.00 0.03 5.46 84.65 0.46 0.49 16 20 N -0.94 -56.63 13.29 21.45 0.28 -56.34 16 21 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 22 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 25 C -0.14 -1.89 9.69 22.28 0.22 -1.67 16 26 C -0.11 -1.55 9.98 22.35 0.22 -1.33 16 27 C 0.05 0.89 6.72 22.57 0.15 1.04 16 28 O -0.50 -8.49 13.29 -79.62 -1.06 -9.54 16 29 H 0.06 0.54 7.66 -2.38 -0.02 0.52 16 30 H 0.07 0.50 7.66 -2.39 -0.02 0.48 16 31 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.14 1.68 6.30 -2.91 -0.02 1.66 16 33 H 0.08 0.90 8.08 -2.38 -0.02 0.88 16 34 H 0.09 1.10 8.08 -2.39 -0.02 1.08 16 35 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.35 6.15 8.29 -89.70 -0.74 5.40 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.38 8.48 9.04 -74.06 -0.67 7.81 16 41 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 42 H 0.07 2.27 7.93 -2.39 -0.02 2.25 16 43 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.08 2.59 6.30 -2.39 -0.02 2.58 16 45 H 0.05 2.33 6.86 -2.39 -0.02 2.32 16 46 H 0.00 0.25 7.93 -2.38 -0.02 0.24 16 47 H -0.04 -2.31 8.12 -2.39 -0.02 -2.33 16 48 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 49 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 50 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 51 H 0.40 3.04 9.06 -74.06 -0.67 2.37 16 Total: -1.00 -73.03 416.78 -4.41 -77.44 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -1.14 Total: 20.14 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: 5.81 Total: -10.86 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -7.34 Total: -99.76 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -3.77 Total: -33.71 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -73.03 -4.41 -77.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591756684.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.919 kcal (2) G-P(sol) polarization free energy of solvation -73.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds