Wall clock time and date at job start Tue Mar 31 2020 22:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99801 * 2 1 4 4 H 1.48502 * 109.47239 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47202 * 299.99835 * 3 2 1 6 6 H 1.48501 * 109.47314 * 59.99737 * 3 2 1 7 7 C 1.38806 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00121 * 163.07323 * 7 2 1 9 9 N 1.36939 * 120.00268 * 343.06966 * 7 2 1 10 10 C 1.46931 * 120.62569 * 331.85317 * 9 7 2 11 11 C 1.53205 * 108.77130 * 233.58413 * 10 9 7 12 12 C 1.53033 * 109.30989 * 305.36292 * 11 10 9 13 13 N 1.46506 * 109.45923 * 181.38455 * 12 11 10 14 14 C 1.34776 * 120.00231 * 154.97359 * 13 12 11 15 15 O 1.21346 * 119.99908 * 0.02562 * 14 13 12 16 16 C 1.49441 * 120.00065 * 180.02562 * 14 13 12 17 17 O 1.21355 * 120.00144 * 359.97438 * 16 14 13 18 18 N 1.34776 * 120.00065 * 180.02562 * 16 14 13 19 19 C 1.46503 * 120.00077 * 180.27109 * 18 16 14 20 20 C 1.53002 * 109.47119 * 179.72508 * 19 18 16 21 21 N 1.46899 * 110.01568 * 58.61219 * 20 19 18 22 22 C 1.54264 * 110.03183 * 297.16907 * 20 19 18 23 23 C 1.54895 * 104.19606 * 217.10564 * 22 20 19 24 24 C 1.54886 * 102.74866 * 37.94139 * 23 22 20 25 25 C 1.53875 * 110.03356 * 180.02562 * 20 19 18 26 26 C 1.53047 * 109.52973 * 61.37703 * 12 11 10 27 27 C 1.46927 * 120.63438 * 151.82713 * 9 7 2 28 28 H 0.97003 * 120.00223 * 359.97438 * 1 2 3 29 29 H 1.08992 * 109.58876 * 113.79889 * 10 9 7 30 30 H 1.09000 * 109.70647 * 353.44067 * 10 9 7 31 31 H 1.08998 * 109.48996 * 185.41393 * 11 10 9 32 32 H 1.08995 * 109.52103 * 65.33314 * 11 10 9 33 33 H 1.08997 * 109.46736 * 301.35651 * 12 11 10 34 34 H 0.96998 * 119.99753 * 334.98109 * 13 12 11 35 35 H 0.96998 * 120.00016 * 0.02562 * 18 16 14 36 36 H 1.09002 * 109.47138 * 299.72474 * 19 18 16 37 37 H 1.08998 * 109.46865 * 59.72732 * 19 18 16 38 38 H 1.00906 * 110.99859 * 300.69591 * 21 20 19 39 39 H 1.00892 * 111.00194 * 64.65386 * 21 20 19 40 40 H 1.08997 * 110.48668 * 335.78061 * 22 20 19 41 41 H 1.08996 * 110.49006 * 98.42926 * 22 20 19 42 42 H 1.08998 * 110.75761 * 279.62850 * 23 22 20 43 43 H 1.08996 * 110.91349 * 156.33101 * 23 22 20 44 44 H 1.08998 * 110.48853 * 203.38042 * 24 23 22 45 45 H 1.09004 * 110.48879 * 80.73664 * 24 23 22 46 46 H 1.08992 * 110.03441 * 238.56997 * 25 20 19 47 47 H 1.09007 * 110.02875 * 0.02562 * 25 20 19 48 48 H 1.08996 * 109.49463 * 58.57172 * 26 12 11 49 49 H 1.08988 * 109.49819 * 178.67174 * 26 12 11 50 50 H 1.08998 * 109.58724 * 246.20226 * 27 9 7 51 51 H 1.08994 * 109.58422 * 6.48806 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0551 -1.2225 -0.2718 9 7 1.3701 -2.3622 0.3464 10 6 0.2261 -2.3397 1.2681 11 6 0.4975 -3.3187 2.4148 12 6 0.8120 -4.7004 1.8369 13 7 1.0397 -5.6470 2.9316 14 6 0.8358 -6.9649 2.7363 15 8 0.4641 -7.3674 1.6536 16 6 1.0675 -7.9304 3.8531 17 8 1.4397 -7.5280 4.9358 18 7 0.8641 -9.2483 3.6577 19 6 1.0855 -10.1943 4.7543 20 6 0.7788 -11.6139 4.2730 21 7 1.6335 -11.9520 3.1271 22 6 -0.7077 -11.7278 3.8766 23 6 -1.1161 -13.1489 4.3381 24 6 -0.3484 -13.3083 5.6739 25 6 1.0067 -12.6187 5.4159 26 6 2.0676 -4.6169 0.9658 27 6 1.8139 -3.6529 -0.1975 28 1 -0.4850 0.8401 0.0004 29 1 -0.6770 -2.6404 0.7370 30 1 0.0967 -1.3343 1.6688 31 1 -0.3831 -3.3835 3.0539 32 1 1.3470 -2.9673 3.0004 33 1 -0.0280 -5.0407 1.2314 34 1 1.3371 -5.3253 3.7970 35 1 0.5677 -9.5702 2.7920 36 1 2.1245 -10.1373 5.0790 37 1 0.4299 -9.9437 5.5881 38 1 1.4869 -11.3081 2.3642 39 1 2.6055 -11.9784 3.3964 40 1 -1.2997 -10.9736 4.3951 41 1 -0.8234 -11.6293 2.7973 42 1 -0.7927 -13.8977 3.6151 43 1 -2.1920 -13.2109 4.5011 44 1 -0.2017 -14.3631 5.9061 45 1 -0.8823 -12.8093 6.4827 46 1 1.7511 -13.3579 5.1202 47 1 1.3355 -12.0949 6.3135 48 1 2.9023 -4.2528 1.5647 49 1 2.3046 -5.6057 0.5735 50 1 1.0403 -4.0607 -0.8481 51 1 2.7333 -3.5131 -0.7660 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595282534.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:05 Heat of formation + Delta-G solvation = -62.183216 kcal Electronic energy + Delta-G solvation = -29709.615300 eV Core-core repulsion = 25643.560804 eV Total energy + Delta-G solvation = -4066.054496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.88652 -39.66837 -38.56880 -37.35841 -35.30719 -34.42172 -32.73751 -32.16383 -30.23855 -29.56007 -29.29478 -28.71344 -26.10612 -25.00509 -23.53036 -22.31578 -21.77873 -21.21612 -20.33090 -19.87695 -19.41878 -18.41717 -17.11760 -16.80349 -16.42181 -16.11090 -15.81079 -15.57758 -15.54106 -14.95186 -14.81978 -14.50861 -14.15458 -13.92064 -13.67540 -13.58069 -13.46341 -13.21696 -13.01693 -12.66052 -12.45451 -12.01104 -11.79484 -11.61637 -11.53694 -11.52436 -11.46409 -11.30577 -11.17242 -10.95363 -10.90056 -10.76435 -10.54021 -10.34469 -10.09255 -9.88926 -9.74460 -9.61533 -9.50198 -9.23438 -8.91548 -8.50388 -6.72952 -5.83040 -3.25552 1.34705 2.24102 3.15978 3.35112 3.43466 3.45574 3.53742 3.92559 4.02096 4.14341 4.32751 4.43305 4.46808 4.72746 4.82854 4.97598 5.06874 5.20793 5.25032 5.29102 5.34582 5.35915 5.42841 5.48261 5.49037 5.50660 5.59489 5.69007 5.73059 5.76496 5.85784 5.97091 5.99697 6.11770 6.23148 6.43071 6.45713 6.50770 6.65083 6.67761 6.73867 6.82985 6.91854 6.92778 7.26346 7.32921 7.57244 7.65010 7.77082 8.00446 8.40849 9.16980 9.79931 10.36523 11.25961 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.035836 B = 0.001859 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.138785 B =15055.612164 C =15106.377670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.067 0.933 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.148 4.148 12 C 0.148 3.852 13 N -0.689 5.689 14 C 0.502 3.498 15 O -0.524 6.524 16 C 0.508 3.492 17 O -0.519 6.519 18 N -0.704 5.704 19 C 0.089 3.911 20 C 0.104 3.896 21 N -0.832 5.832 22 C -0.116 4.116 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.111 4.111 26 C -0.140 4.140 27 C 0.148 3.852 28 H 0.254 0.746 29 H 0.022 0.978 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.408 0.592 35 H 0.410 0.590 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.341 0.659 39 H 0.343 0.657 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.065 0.935 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.061 0.939 49 H 0.055 0.945 50 H 0.021 0.979 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 -25.385 11.330 27.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.382 4.382 8 H 0.085 0.915 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.188 4.188 12 C 0.046 3.954 13 N -0.340 5.340 14 C 0.282 3.718 15 O -0.400 6.400 16 C 0.288 3.712 17 O -0.394 6.394 18 N -0.359 5.359 19 C -0.036 4.036 20 C 0.011 3.989 21 N -0.362 5.362 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.160 4.160 25 C -0.149 4.149 26 C -0.180 4.180 27 C 0.021 3.979 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.244 0.756 35 H 0.247 0.753 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.155 0.845 39 H 0.157 0.843 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.039 0.961 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.432 -25.902 11.292 28.260 hybrid contribution 0.882 1.850 0.233 2.063 sum 0.449 -24.052 11.525 26.674 Atomic orbital electron populations 1.70029 1.05259 1.25489 1.53947 1.25063 0.95313 0.98485 1.00813 0.86219 0.79368 0.83873 0.77282 1.20251 1.21708 1.21548 1.19229 0.92621 0.84708 1.41630 0.91549 1.44107 1.35806 1.01677 1.49932 1.20756 0.88935 0.97953 0.87572 1.22575 1.00896 0.94292 1.01021 1.21260 0.98968 0.88192 0.87027 1.46236 1.65359 1.05513 1.16862 1.19973 0.79721 0.84098 0.88032 1.90762 1.45468 1.78214 1.25602 1.20434 0.78429 0.83605 0.88693 1.90764 1.44385 1.78355 1.25944 1.45735 1.68021 1.05956 1.16219 1.22439 1.02212 0.88963 0.89994 1.21780 0.94559 0.90975 0.91611 1.59065 1.10630 1.57689 1.08863 1.22455 0.93228 0.97895 1.01774 1.22414 0.99532 0.96688 0.96893 1.22319 0.95411 1.00491 0.97807 1.22164 0.98748 0.97562 0.96458 1.22403 0.96945 0.99746 0.98929 1.20868 0.98059 0.86503 0.92469 0.93611 0.95970 0.88849 0.92478 0.91866 0.89524 0.75631 0.75264 0.90998 0.90405 0.84503 0.84330 0.91028 0.90833 0.90940 0.91660 0.91452 0.91610 0.90313 0.91345 0.92034 0.92646 0.96071 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.77 11.19 55.49 0.62 -25.15 16 2 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.41 29.59 -169.99 -5.03 16.38 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.80 9.58 -15.06 -0.14 -6.95 16 8 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.53 2.99 -172.32 -0.52 -15.05 16 10 C 0.17 4.02 5.30 -3.70 -0.02 4.00 16 11 C -0.15 -2.67 5.55 -26.61 -0.15 -2.82 16 12 C 0.15 2.51 2.42 -67.89 -0.16 2.35 16 13 N -0.69 -10.03 5.07 -54.20 -0.27 -10.30 16 14 C 0.50 7.23 7.85 -11.59 -0.09 7.14 16 15 O -0.52 -8.52 16.14 5.50 0.09 -8.44 16 16 C 0.51 6.38 7.89 -11.59 -0.09 6.29 16 17 O -0.52 -7.55 16.48 5.49 0.09 -7.46 16 18 N -0.70 -6.58 5.10 -60.73 -0.31 -6.89 16 19 C 0.09 0.69 4.41 -4.04 -0.02 0.67 16 20 C 0.10 0.64 0.86 -130.48 -0.11 0.52 16 21 N -0.83 -4.98 8.75 1.64 0.01 -4.97 16 22 C -0.12 -0.75 5.53 -25.07 -0.14 -0.88 16 23 C -0.12 -0.69 6.91 -24.74 -0.17 -0.86 16 24 C -0.12 -0.65 6.83 -25.10 -0.17 -0.82 16 25 C -0.11 -0.60 6.20 -25.64 -0.16 -0.76 16 26 C -0.14 -2.48 5.65 -26.61 -0.15 -2.63 16 27 C 0.15 3.10 6.52 -3.71 -0.02 3.07 16 28 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 2.40 6.07 -51.93 -0.31 2.09 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.60 7.58 -51.93 -0.39 1.21 16 34 H 0.41 5.46 8.07 -40.82 -0.33 5.13 16 35 H 0.41 3.53 6.55 -40.82 -0.27 3.26 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.64 8.12 -51.93 -0.42 0.22 16 38 H 0.34 2.09 7.62 -39.29 -0.30 1.79 16 39 H 0.34 1.80 9.01 -39.30 -0.35 1.45 16 40 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 41 H 0.07 0.50 8.02 -51.93 -0.42 0.09 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.08 0.43 7.91 -51.93 -0.41 0.02 16 47 H 0.07 0.34 7.67 -51.93 -0.40 -0.05 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.05 0.94 8.14 -51.94 -0.42 0.51 16 50 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 401.18 15.07 6.05 6.05 Total: -1.00 -30.48 401.18 -9.58 -40.06 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -8.62 Total: 7.50 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: -1.69 Total: 8.27 kcal Atomic # 7 Polarization: -61.90 SS G_CDS: -0.46 Total: -62.36 kcal Atomic # 8 Polarization: -16.07 SS G_CDS: 0.18 Total: -15.89 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.38 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.48 -9.58 -40.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595282534.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.125 kcal (2) G-P(sol) polarization free energy of solvation -30.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds