Wall clock time and date at job start Tue Mar 31 2020 22:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 119.99831 * 2 1 4 4 H 1.48498 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47109 * 299.99540 * 3 2 1 6 6 H 1.48496 * 109.47614 * 59.99998 * 3 2 1 7 7 C 1.38951 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99735 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00130 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00060 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99907 * 180.02562 * 10 9 7 13 13 N 1.46508 * 109.47231 * 179.97438 * 12 10 9 14 14 C 1.34771 * 119.99986 * 179.97438 * 13 12 10 15 15 O 1.21583 * 120.00443 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99863 * 179.97438 * 14 13 12 17 17 C 1.46505 * 120.00199 * 179.97438 * 16 14 13 18 18 H 1.08995 * 110.28181 * 35.67888 * 17 16 14 19 19 C 1.54257 * 110.32259 * 273.54945 * 17 16 14 20 20 C 1.54381 * 105.14978 * 241.05014 * 19 17 16 21 21 N 1.48720 * 104.51692 * 336.27274 * 20 19 17 22 22 C 1.46900 * 111.01831 * 158.96284 * 21 20 19 23 23 C 1.52997 * 109.47479 * 184.48708 * 22 21 20 24 24 C 1.53003 * 109.47228 * 179.97438 * 23 22 21 25 25 C 1.53001 * 109.46600 * 60.00643 * 24 23 22 26 26 C 1.53006 * 109.47178 * 299.99783 * 25 24 23 27 27 C 1.53001 * 109.46640 * 64.49173 * 22 21 20 28 28 C 1.48567 * 104.28820 * 39.36098 * 21 20 19 29 29 H 0.96998 * 120.00254 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00241 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47731 * 60.00048 * 12 10 9 32 32 H 1.09002 * 109.47485 * 299.99679 * 12 10 9 33 33 H 0.97001 * 119.99757 * 359.97438 * 13 12 10 34 34 H 0.97004 * 119.99484 * 0.02562 * 16 14 13 35 35 H 1.09002 * 110.32715 * 0.02562 * 19 17 16 36 36 H 1.08998 * 110.32251 * 122.10596 * 19 17 16 37 37 H 1.09004 * 110.40867 * 94.98012 * 20 19 17 38 38 H 1.08996 * 110.41187 * 217.42234 * 20 19 17 39 39 H 1.09001 * 109.47412 * 304.49367 * 22 21 20 40 40 H 1.08996 * 109.47736 * 300.00557 * 23 22 21 41 41 H 1.09003 * 109.46770 * 60.00691 * 23 22 21 42 42 H 1.08995 * 109.47064 * 300.00534 * 24 23 22 43 43 H 1.09001 * 109.46720 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.46950 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.47060 * 59.99647 * 25 24 23 46 46 H 1.09001 * 109.46811 * 300.00404 * 26 25 24 47 47 H 1.09000 * 109.46916 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.47166 * 299.99546 * 27 22 21 49 49 H 1.08995 * 109.47501 * 60.00489 * 27 22 21 50 50 H 1.08999 * 110.41133 * 201.79165 * 28 21 20 51 51 H 1.09004 * 110.50861 * 79.40616 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8894 2.3963 -1.2125 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2101 -3.5579 0.0031 12 6 1.2438 -4.8629 0.0032 13 7 2.1958 -5.9765 0.0037 14 6 1.7465 -7.2471 0.0048 15 8 0.5511 -7.4693 0.0059 16 7 2.6223 -8.2715 0.0048 17 6 2.1339 -9.6528 0.0065 18 1 1.2244 -9.7327 -0.5887 19 6 1.8725 -10.1268 1.4510 20 6 2.8202 -11.3276 1.6593 21 7 3.0872 -11.8343 0.2868 22 6 4.3222 -12.6289 0.2495 23 6 4.6224 -13.0375 -1.1940 24 6 5.9090 -13.8645 -1.2329 25 6 5.7353 -15.1185 -0.3736 26 6 5.4351 -14.7099 1.0700 27 6 4.1479 -13.8828 1.1087 28 6 3.2194 -10.6059 -0.5383 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3907 0.0016 31 1 0.6174 -4.9213 -0.8869 32 1 0.6168 -4.9201 0.8930 33 1 3.1494 -5.7992 0.0033 34 1 3.5760 -8.0942 0.0043 35 1 2.1071 -9.3317 2.1587 36 1 0.8346 -10.4395 1.5648 37 1 3.7474 -11.0027 2.1313 38 1 2.3345 -12.0951 2.2619 39 1 5.1488 -12.0341 0.6382 40 1 3.7958 -13.6322 -1.5827 41 1 4.7466 -12.1441 -1.8061 42 1 6.7354 -13.2694 -0.8444 43 1 6.1231 -14.1552 -2.2614 44 1 6.6518 -15.7079 -0.4016 45 1 4.9089 -15.7136 -0.7621 46 1 6.2615 -14.1147 1.4585 47 1 5.3117 -15.6033 1.6822 48 1 3.9341 -13.5917 2.1371 49 1 3.3214 -14.4776 0.7200 50 1 3.0348 -10.8317 -1.5885 51 1 4.2090 -10.1664 -0.4130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595780699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:51 Heat of formation + Delta-G solvation = -79.502889 kcal Electronic energy + Delta-G solvation = -28956.123019 eV Core-core repulsion = 24889.317486 eV Total energy + Delta-G solvation = -4066.805533 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.43465 -39.54767 -38.28285 -37.49390 -34.48645 -34.23860 -33.63641 -31.65049 -31.37455 -31.25070 -28.92969 -28.30121 -26.92123 -24.45228 -23.13224 -22.98521 -21.34315 -21.00947 -20.28615 -20.05450 -19.56373 -18.42338 -17.95028 -16.94526 -16.41859 -15.75304 -15.57131 -15.31397 -15.03918 -14.70104 -14.64195 -14.51300 -14.25529 -14.04776 -14.00108 -13.90830 -13.49807 -13.42933 -13.11832 -12.64197 -12.33275 -12.18147 -12.15646 -12.04727 -11.77213 -11.69780 -11.63477 -11.55409 -11.47274 -11.14375 -11.00140 -10.89300 -10.61905 -10.41153 -10.36551 -10.32799 -10.02305 -9.64719 -9.16341 -8.84216 -8.62511 -8.61478 -8.09853 -6.51384 -3.93373 2.75139 3.10144 3.22391 3.29016 3.38822 3.58706 3.75355 4.09171 4.21718 4.25078 4.32711 4.48874 4.58211 4.61309 4.78020 4.84222 4.90582 4.93400 4.96716 5.02881 5.08463 5.11524 5.17410 5.17776 5.20025 5.30845 5.41828 5.55909 5.60575 5.64765 5.67309 5.75615 5.78345 5.81403 5.81745 5.87586 5.95286 5.97590 6.01355 6.04663 6.08666 6.34518 6.65264 6.70339 6.75838 7.08921 7.46234 7.92780 8.23354 8.45391 8.80068 9.04886 9.39833 9.87676 10.65577 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.029884 B = 0.001614 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.731056 B =17346.335607 C =17798.048325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.598 6.598 12 C 0.129 3.871 13 N -0.725 5.725 14 C 0.705 3.295 15 O -0.595 6.595 16 N -0.744 5.744 17 C 0.163 3.837 18 H 0.100 0.900 19 C -0.136 4.136 20 C 0.033 3.967 21 N -0.504 5.504 22 C 0.076 3.924 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.110 4.110 28 C 0.029 3.971 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.406 0.594 34 H 0.394 0.606 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.043 0.957 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.060 0.940 43 H 0.064 0.936 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.072 0.928 50 H 0.090 0.910 51 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.448 -28.503 0.715 29.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.382 5.382 14 C 0.405 3.595 15 O -0.474 6.474 16 N -0.401 5.401 17 C 0.057 3.943 18 H 0.118 0.882 19 C -0.175 4.175 20 C -0.094 4.094 21 N -0.228 5.228 22 C -0.032 4.032 23 C -0.151 4.151 24 C -0.157 4.157 25 C -0.158 4.158 26 C -0.157 4.157 27 C -0.148 4.148 28 C -0.100 4.100 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.243 0.757 34 H 0.228 0.772 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.109 0.891 51 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 7.568 -28.846 0.516 29.826 hybrid contribution 1.352 1.616 0.345 2.135 sum 8.920 -27.230 0.861 28.667 Atomic orbital electron populations 1.69622 1.06003 1.28412 1.49391 1.25325 0.95665 0.99922 0.96823 0.85755 0.79651 0.80839 0.77818 1.19173 1.20622 1.20623 1.19777 0.93481 0.82011 1.48170 0.87648 1.41792 1.09501 1.04455 1.62663 1.19771 0.88290 0.85032 0.85471 1.90487 1.13777 1.86879 1.57375 1.20781 0.91211 0.84837 1.03139 1.44786 1.11206 1.03362 1.78848 1.15846 0.85247 0.80530 0.77874 1.90908 1.13991 1.84211 1.58259 1.45201 1.08878 1.04836 1.81149 1.21427 0.97584 0.78901 0.96404 0.88211 1.22791 1.00526 0.97137 0.97087 1.23160 0.98512 0.96923 0.90841 1.65446 1.33150 1.16506 1.07696 1.21843 0.90282 0.94634 0.96465 1.21601 0.97984 1.00093 0.95423 1.21526 0.97567 0.96599 0.99987 1.21549 1.01512 0.97465 0.95265 1.21536 0.97620 0.99690 0.96824 1.21559 0.98114 0.95737 0.99398 1.23330 0.97478 0.89994 0.99163 0.91642 0.77009 0.90013 0.90030 0.75663 0.77153 0.90641 0.90220 0.93824 0.89908 0.94004 0.90939 0.91919 0.92139 0.91759 0.92132 0.91831 0.92162 0.91807 0.92017 0.90975 0.89149 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.88 13.05 55.50 0.72 -23.15 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.63 5.29 -10.97 -0.06 -13.69 16 10 C 0.43 9.84 7.85 -10.99 -0.09 9.75 16 11 O -0.60 -15.27 15.24 5.55 0.08 -15.19 16 12 C 0.13 2.40 6.15 -5.19 -0.03 2.37 16 13 N -0.72 -12.13 5.53 -66.41 -0.37 -12.49 16 14 C 0.71 11.33 8.56 -86.92 -0.74 10.58 16 15 O -0.60 -11.55 16.04 5.29 0.08 -11.46 16 16 N -0.74 -8.77 5.05 -57.33 -0.29 -9.06 16 17 C 0.16 1.74 3.36 -66.55 -0.22 1.51 16 18 H 0.10 1.26 7.64 -51.93 -0.40 0.86 16 19 C -0.14 -1.37 6.77 -25.35 -0.17 -1.54 16 20 C 0.03 0.28 5.54 -2.09 -0.01 0.26 16 21 N -0.50 -4.17 5.20 -221.88 -1.15 -5.32 16 22 C 0.08 0.54 1.71 -67.71 -0.12 0.43 16 23 C -0.11 -0.75 5.06 -26.73 -0.14 -0.88 16 24 C -0.12 -0.67 5.92 -26.73 -0.16 -0.83 16 25 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 26 C -0.12 -0.65 5.93 -26.70 -0.16 -0.81 16 27 C -0.11 -0.71 5.17 -26.70 -0.14 -0.85 16 28 C 0.03 0.24 5.05 -2.18 -0.01 0.23 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.40 9.47 7.90 -40.82 -0.32 9.15 16 31 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.41 6.59 7.45 -40.82 -0.30 6.29 16 34 H 0.39 3.78 8.36 -40.82 -0.34 3.44 16 35 H 0.07 0.83 7.95 -51.93 -0.41 0.42 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.04 0.35 7.91 -51.93 -0.41 -0.06 16 38 H 0.08 0.63 7.71 -51.93 -0.40 0.23 16 39 H 0.04 0.32 7.98 -51.93 -0.41 -0.09 16 40 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.42 6.94 -51.93 -0.36 0.06 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 48 H 0.06 0.40 7.07 -51.93 -0.37 0.03 16 49 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.09 0.74 7.67 -51.93 -0.40 0.34 16 51 H 0.05 0.39 7.57 -51.93 -0.39 0.00 16 LS Contribution 401.61 15.07 6.05 6.05 Total: -1.00 -31.11 401.61 -11.01 -42.12 By element: Atomic # 1 Polarization: 23.81 SS G_CDS: -8.68 Total: 15.13 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: -2.39 Total: 11.58 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -1.14 Total: -63.72 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: 0.17 Total: -26.65 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -31.11 -11.01 -42.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595780699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.385 kcal (2) G-P(sol) polarization free energy of solvation -31.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds