Wall clock time and date at job start Tue Mar 31 2020 22:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86794 * 119.99831 * 2 1 4 4 H 1.48498 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47109 * 299.99540 * 3 2 1 6 6 H 1.48496 * 109.47614 * 59.99998 * 3 2 1 7 7 C 1.38951 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99735 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00293 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00130 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00060 * 0.02562 * 10 9 7 12 12 C 1.50694 * 119.99907 * 180.02562 * 10 9 7 13 13 N 1.46508 * 109.47231 * 179.97438 * 12 10 9 14 14 C 1.34771 * 119.99986 * 179.97438 * 13 12 10 15 15 O 1.21583 * 120.00443 * 359.97438 * 14 13 12 16 16 N 1.34778 * 119.99863 * 179.97438 * 14 13 12 17 17 C 1.46505 * 120.00199 * 179.97438 * 16 14 13 18 18 H 1.08995 * 110.28181 * 35.67888 * 17 16 14 19 19 C 1.54257 * 110.32259 * 273.54945 * 17 16 14 20 20 C 1.54381 * 105.14978 * 241.05014 * 19 17 16 21 21 N 1.48720 * 104.51692 * 336.27274 * 20 19 17 22 22 C 1.46900 * 111.01831 * 158.96284 * 21 20 19 23 23 C 1.52997 * 109.47479 * 184.48708 * 22 21 20 24 24 C 1.53003 * 109.47228 * 179.97438 * 23 22 21 25 25 C 1.53001 * 109.46600 * 60.00643 * 24 23 22 26 26 C 1.53006 * 109.47178 * 299.99783 * 25 24 23 27 27 C 1.53001 * 109.46640 * 64.49173 * 22 21 20 28 28 C 1.48567 * 104.28820 * 39.36098 * 21 20 19 29 29 H 0.96998 * 120.00254 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00241 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47731 * 60.00048 * 12 10 9 32 32 H 1.09002 * 109.47485 * 299.99679 * 12 10 9 33 33 H 0.97001 * 119.99757 * 359.97438 * 13 12 10 34 34 H 0.97004 * 119.99484 * 0.02562 * 16 14 13 35 35 H 1.09002 * 110.32715 * 0.02562 * 19 17 16 36 36 H 1.08998 * 110.32251 * 122.10596 * 19 17 16 37 37 H 1.09004 * 110.40867 * 94.98012 * 20 19 17 38 38 H 1.08996 * 110.41187 * 217.42234 * 20 19 17 39 39 H 1.09001 * 109.47412 * 304.49367 * 22 21 20 40 40 H 1.08996 * 109.47736 * 300.00557 * 23 22 21 41 41 H 1.09003 * 109.46770 * 60.00691 * 23 22 21 42 42 H 1.08995 * 109.47064 * 300.00534 * 24 23 22 43 43 H 1.09001 * 109.46720 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.46950 * 179.97438 * 25 24 23 45 45 H 1.09001 * 109.47060 * 59.99647 * 25 24 23 46 46 H 1.09001 * 109.46811 * 300.00404 * 26 25 24 47 47 H 1.09000 * 109.46916 * 180.02562 * 26 25 24 48 48 H 1.09001 * 109.47166 * 299.99546 * 27 22 21 49 49 H 1.08995 * 109.47501 * 60.00489 * 27 22 21 50 50 H 1.08999 * 110.41133 * 201.79165 * 28 21 20 51 51 H 1.09004 * 110.50861 * 79.40616 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6177 0.0000 4 1 3.7080 1.3464 -0.0006 5 1 1.8894 2.3963 -1.2125 6 1 1.8894 2.3965 1.2124 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9973 -3.5578 0.0026 11 8 3.2101 -3.5579 0.0031 12 6 1.2438 -4.8629 0.0032 13 7 2.1958 -5.9765 0.0037 14 6 1.7465 -7.2471 0.0048 15 8 0.5511 -7.4693 0.0059 16 7 2.6223 -8.2715 0.0048 17 6 2.1339 -9.6528 0.0065 18 1 1.2244 -9.7327 -0.5887 19 6 1.8725 -10.1268 1.4510 20 6 2.8202 -11.3276 1.6593 21 7 3.0872 -11.8343 0.2868 22 6 4.3222 -12.6289 0.2495 23 6 4.6224 -13.0375 -1.1940 24 6 5.9090 -13.8645 -1.2329 25 6 5.7353 -15.1185 -0.3736 26 6 5.4351 -14.7099 1.0700 27 6 4.1479 -13.8828 1.1087 28 6 3.2194 -10.6059 -0.5383 29 1 -0.4850 0.8400 -0.0004 30 1 0.3534 -2.3907 0.0016 31 1 0.6174 -4.9213 -0.8869 32 1 0.6168 -4.9201 0.8930 33 1 3.1494 -5.7992 0.0033 34 1 3.5760 -8.0942 0.0043 35 1 2.1071 -9.3317 2.1587 36 1 0.8346 -10.4395 1.5648 37 1 3.7474 -11.0027 2.1313 38 1 2.3345 -12.0951 2.2619 39 1 5.1488 -12.0341 0.6382 40 1 3.7958 -13.6322 -1.5827 41 1 4.7466 -12.1441 -1.8061 42 1 6.7354 -13.2694 -0.8444 43 1 6.1231 -14.1552 -2.2614 44 1 6.6518 -15.7079 -0.4016 45 1 4.9089 -15.7136 -0.7621 46 1 6.2615 -14.1147 1.4585 47 1 5.3117 -15.6033 1.6822 48 1 3.9341 -13.5917 2.1371 49 1 3.3214 -14.4776 0.7200 50 1 3.0348 -10.8317 -1.5885 51 1 4.2090 -10.1664 -0.4130 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595780699.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:50 Heat of formation + Delta-G solvation = -102.248226 kcal Electronic energy + Delta-G solvation = -28957.109331 eV Core-core repulsion = 24889.317486 eV Total energy + Delta-G solvation = -4067.791845 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.45839 -40.58426 -39.93406 -38.26637 -36.24093 -35.27555 -35.25197 -33.37235 -32.35426 -31.80115 -29.79877 -29.27894 -28.15168 -26.28642 -23.71359 -23.60806 -22.36068 -21.74928 -21.38515 -21.12982 -20.61918 -20.11234 -19.56397 -17.84276 -17.46540 -17.16761 -16.81834 -16.65006 -16.39839 -15.97680 -15.63844 -15.56190 -15.28707 -15.13407 -15.00667 -14.87089 -14.63158 -14.20400 -13.94191 -13.76440 -13.72224 -13.54771 -13.14662 -12.98912 -12.89675 -12.72979 -12.61878 -12.44203 -12.37132 -12.16295 -12.11080 -12.00034 -11.73600 -11.57663 -11.42205 -11.39910 -11.11423 -10.84967 -10.55369 -10.41931 -10.09900 -9.84327 -9.48623 -8.50787 -6.00985 1.35445 1.42782 1.53556 1.59992 1.90008 2.11059 2.28673 2.85710 3.09713 3.16522 3.36124 3.50905 3.63725 3.83983 3.95498 4.05334 4.12842 4.21414 4.26330 4.29553 4.35468 4.41851 4.44030 4.46878 4.51371 4.60090 4.63549 4.64493 4.72700 4.81790 4.92489 4.99106 5.02575 5.11507 5.14413 5.17523 5.29903 5.30746 5.31260 5.34052 5.35858 5.39317 5.49610 5.56645 5.85577 5.91496 5.94581 6.09985 6.48417 7.02022 7.03924 7.43173 7.53625 7.94847 8.66336 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.029884 B = 0.001614 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.731056 B =17346.335607 C =17798.048325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.724 5.724 14 C 0.706 3.294 15 O -0.629 6.629 16 N -0.726 5.726 17 C 0.161 3.839 18 H 0.079 0.921 19 C -0.133 4.133 20 C 0.041 3.959 21 N -0.511 5.511 22 C 0.077 3.923 23 C -0.111 4.111 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.116 4.116 27 C -0.107 4.107 28 C 0.038 3.962 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.410 0.590 34 H 0.408 0.592 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.090 0.910 39 H 0.041 0.959 40 H 0.065 0.935 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.068 0.932 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.070 0.930 48 H 0.061 0.939 49 H 0.065 0.935 50 H 0.094 0.906 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.513 -29.297 0.784 30.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.014 3.986 13 N -0.382 5.382 14 C 0.406 3.594 15 O -0.510 6.510 16 N -0.382 5.382 17 C 0.055 3.945 18 H 0.098 0.902 19 C -0.173 4.173 20 C -0.087 4.087 21 N -0.235 5.235 22 C -0.031 4.031 23 C -0.149 4.149 24 C -0.155 4.155 25 C -0.157 4.157 26 C -0.154 4.154 27 C -0.145 4.145 28 C -0.091 4.091 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.248 0.752 34 H 0.245 0.755 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.108 0.892 39 H 0.059 0.941 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.087 0.913 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.080 0.920 49 H 0.083 0.917 50 H 0.113 0.887 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.656 -29.681 0.586 30.923 hybrid contribution 1.018 1.772 0.323 2.069 sum 9.674 -27.909 0.909 29.552 Atomic orbital electron populations 1.69686 1.07010 1.29563 1.49327 1.26127 0.96529 1.02672 0.95791 0.84801 0.78105 0.76720 0.78278 1.19447 1.19668 1.19665 1.19780 0.92977 0.83550 1.50351 0.89551 1.41836 1.09598 1.04590 1.63448 1.20414 0.88111 0.85902 0.83478 1.90464 1.15169 1.87561 1.58021 1.20574 0.90992 0.83067 1.04007 1.44692 1.10985 1.03258 1.79228 1.15924 0.85167 0.80734 0.77582 1.90888 1.15644 1.84634 1.59859 1.45073 1.09110 1.04407 1.79622 1.21500 0.97748 0.78492 0.96785 0.90241 1.22721 1.00633 0.97655 0.96282 1.23099 0.98276 0.96245 0.91041 1.65474 1.34042 1.16399 1.07579 1.21875 0.89569 0.94655 0.96983 1.21577 0.98247 1.00091 0.94950 1.21515 0.96968 0.96595 1.00412 1.21549 1.01829 0.97346 0.95010 1.21523 0.97027 0.99783 0.97102 1.21533 0.98431 0.95422 0.99144 1.23249 0.97020 0.89515 0.99269 0.91083 0.76701 0.89089 0.89112 0.75247 0.75538 0.91558 0.91027 0.93210 0.89166 0.94113 0.91628 0.92028 0.92084 0.91288 0.91376 0.92005 0.92096 0.91164 0.92008 0.91652 0.88732 0.92057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.62 13.05 21.66 0.28 -48.33 16 2 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 3 Si 1.00 41.67 29.55 68.60 2.03 43.70 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 6 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 7 C -0.34 -18.56 9.68 84.04 0.81 -17.74 16 8 H 0.09 5.00 7.16 -2.91 -0.02 4.98 16 9 N -0.56 -28.07 5.29 -307.00 -1.62 -29.69 16 10 C 0.43 19.98 7.85 87.66 0.69 20.67 16 11 O -0.62 -32.02 15.24 -3.05 -0.05 -32.06 16 12 C 0.14 5.24 6.15 85.63 0.53 5.77 16 13 N -0.72 -23.72 5.53 -482.29 -2.67 -26.39 16 14 C 0.71 22.22 8.56 179.06 1.53 23.76 16 15 O -0.63 -24.28 16.04 -3.98 -0.06 -24.35 16 16 N -0.73 -16.38 5.05 -453.54 -2.29 -18.67 16 17 C 0.16 3.31 3.36 45.88 0.15 3.46 16 18 H 0.08 2.01 7.64 -2.39 -0.02 1.99 16 19 C -0.13 -2.60 6.77 31.49 0.21 -2.39 16 20 C 0.04 0.62 5.54 86.42 0.48 1.10 16 21 N -0.51 -7.74 5.20 -855.88 -4.45 -12.18 16 22 C 0.08 0.98 1.71 44.91 0.08 1.06 16 23 C -0.11 -1.30 5.06 30.59 0.15 -1.14 16 24 C -0.12 -1.13 5.92 30.60 0.18 -0.95 16 25 C -0.12 -1.07 5.92 30.60 0.18 -0.89 16 26 C -0.12 -1.08 5.93 30.61 0.18 -0.90 16 27 C -0.11 -1.22 5.17 30.61 0.16 -1.06 16 28 C 0.04 0.58 5.05 86.45 0.44 1.02 16 29 H 0.28 13.85 8.31 -92.71 -0.77 13.08 16 30 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 31 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.41 12.98 7.45 -92.71 -0.69 12.29 16 34 H 0.41 7.15 8.36 -92.71 -0.77 6.38 16 35 H 0.07 1.42 7.95 -2.39 -0.02 1.40 16 36 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.05 0.71 7.91 -2.38 -0.02 0.69 16 38 H 0.09 1.25 7.71 -2.39 -0.02 1.23 16 39 H 0.04 0.54 7.98 -2.39 -0.02 0.53 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 0.73 6.94 -2.39 -0.02 0.71 16 42 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 48 H 0.06 0.70 7.07 -2.39 -0.02 0.68 16 49 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.09 1.41 7.67 -2.39 -0.02 1.39 16 51 H 0.06 0.82 7.57 -2.39 -0.02 0.80 16 Total: -1.00 -65.85 401.61 -3.83 -69.68 By element: Atomic # 1 Polarization: 47.87 SS G_CDS: -1.25 Total: 46.62 kcal Atomic # 6 Polarization: 25.44 SS G_CDS: 6.24 Total: 31.68 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -10.74 Total: -135.27 kcal Atomic # 8 Polarization: -56.30 SS G_CDS: -0.11 Total: -56.41 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -65.85 -3.83 -69.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595780699.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.572 kcal (2) G-P(sol) polarization free energy of solvation -65.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds