Wall clock time and date at job start Tue Mar 31 2020 22:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 119.99918 * 2 1 4 4 H 1.48505 * 109.47450 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47445 * 300.00131 * 3 2 1 6 6 H 1.48506 * 109.47135 * 60.00500 * 3 2 1 7 7 C 1.38951 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00237 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99616 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00290 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99495 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00496 * 180.27780 * 10 9 7 13 13 N 1.46498 * 109.47030 * 179.72320 * 12 10 9 14 14 C 1.34780 * 119.99730 * 179.97438 * 13 12 10 15 15 O 1.21591 * 120.00220 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99905 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99906 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.27350 * 327.09129 * 17 16 14 19 19 C 1.54598 * 110.30922 * 89.28243 * 17 16 14 20 20 C 1.54937 * 102.92167 * 96.95384 * 19 17 16 21 21 N 1.48533 * 103.22262 * 37.41865 * 20 19 17 22 22 C 1.46902 * 110.99962 * 200.27548 * 21 20 19 23 23 C 1.52996 * 109.47284 * 299.05826 * 22 21 20 24 24 C 1.53000 * 109.47398 * 180.02562 * 23 22 21 25 25 C 1.52992 * 109.47522 * 59.99753 * 24 23 22 26 26 C 1.53010 * 109.47043 * 300.00401 * 25 24 23 27 27 C 1.52998 * 109.47032 * 59.99728 * 26 25 24 28 28 C 1.47896 * 105.82233 * 320.78974 * 21 20 19 29 29 H 0.96992 * 119.99911 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00702 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.46563 * 299.72202 * 12 10 9 32 32 H 1.08995 * 109.47489 * 59.71771 * 12 10 9 33 33 H 0.96992 * 120.00570 * 0.02562 * 13 12 10 34 34 H 0.96994 * 119.99754 * 359.97438 * 16 14 13 35 35 H 1.08998 * 110.72833 * 215.31907 * 19 17 16 36 36 H 1.09003 * 110.72286 * 338.60193 * 19 17 16 37 37 H 1.08991 * 110.67396 * 278.98499 * 20 19 17 38 38 H 1.08999 * 110.80916 * 155.91514 * 20 19 17 39 39 H 1.09003 * 109.47338 * 59.05894 * 22 21 20 40 40 H 1.08997 * 109.47204 * 299.99880 * 23 22 21 41 41 H 1.09001 * 109.47319 * 59.99638 * 23 22 21 42 42 H 1.09013 * 109.46760 * 299.99603 * 24 23 22 43 43 H 1.08999 * 109.47140 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.47362 * 180.02562 * 25 24 23 45 45 H 1.08999 * 109.47417 * 60.00201 * 25 24 23 46 46 H 1.08999 * 109.46851 * 300.00147 * 26 25 24 47 47 H 1.08995 * 109.46718 * 179.97438 * 26 25 24 48 48 H 1.08992 * 109.47038 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.47033 * 59.99946 * 27 26 25 50 50 H 1.09001 * 109.91975 * 265.97813 * 28 21 20 51 51 H 1.08997 * 109.92085 * 144.68332 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2439 -4.8630 -0.0069 13 7 2.1960 -5.9764 -0.0122 14 6 1.7467 -7.2471 -0.0179 15 8 0.5513 -7.4694 -0.0180 16 7 2.6226 -8.2715 -0.0223 17 6 2.1343 -9.6527 -0.0279 18 1 1.1992 -9.7249 0.5276 19 6 1.9380 -10.1466 -1.4796 20 6 3.2508 -10.9190 -1.7633 21 7 3.5422 -11.5815 -0.4663 22 6 4.9584 -11.9615 -0.3758 23 6 5.2940 -12.9489 -1.4953 24 6 6.7688 -13.3452 -1.4006 25 6 7.0344 -14.0021 -0.0447 26 6 6.6988 -13.0146 1.0749 27 6 5.2240 -12.6184 0.9803 28 6 3.1903 -10.5954 0.5783 29 1 -0.4849 0.8400 0.0004 30 1 0.3535 -2.3907 0.0002 31 1 0.6172 -4.9249 0.8829 32 1 0.6172 -4.9164 -0.8970 33 1 3.1496 -5.7992 -0.0110 34 1 3.5762 -8.0942 -0.0218 35 1 1.0768 -10.8113 -1.5478 36 1 1.8311 -9.3038 -2.1626 37 1 4.0518 -10.2306 -2.0322 38 1 3.1021 -11.6599 -2.5488 39 1 5.5804 -11.0722 -0.4771 40 1 4.6720 -13.8382 -1.3939 41 1 5.1044 -12.4811 -2.4613 42 1 7.3912 -12.4559 -1.5018 43 1 7.0080 -14.0483 -2.1985 44 1 8.0852 -14.2840 0.0229 45 1 6.4121 -14.8912 0.0565 46 1 7.3211 -12.1255 0.9737 47 1 6.8876 -13.4828 2.0409 48 1 4.9850 -11.9147 1.7775 49 1 4.6017 -13.5076 1.0813 50 1 4.0748 -10.0267 0.8652 51 1 2.7764 -11.1067 1.4474 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595780700.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:54 Heat of formation + Delta-G solvation = -79.661992 kcal Electronic energy + Delta-G solvation = -29133.650678 eV Core-core repulsion = 25066.838246 eV Total energy + Delta-G solvation = -4066.812432 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.49284 -39.53588 -38.28827 -37.49248 -34.47270 -34.19040 -33.64641 -31.62876 -31.37855 -31.24065 -28.95807 -28.29375 -26.96930 -24.46499 -23.13848 -22.93550 -21.39578 -20.94518 -20.28415 -20.06017 -19.57505 -18.44546 -17.95974 -16.90827 -16.42812 -15.77857 -15.58453 -15.33512 -15.03552 -14.67855 -14.66124 -14.49512 -14.24600 -14.02323 -13.95106 -13.88329 -13.62511 -13.42145 -13.04650 -12.61223 -12.27596 -12.18804 -12.11444 -12.02557 -11.76408 -11.72041 -11.63969 -11.50675 -11.45646 -11.14986 -11.09049 -10.94285 -10.60669 -10.41654 -10.35567 -10.33416 -10.03500 -9.65319 -9.18147 -8.76588 -8.63225 -8.61938 -8.10510 -6.51988 -3.94000 2.76700 3.09635 3.21938 3.28583 3.36985 3.57553 3.74555 4.08515 4.23211 4.28200 4.34331 4.44964 4.58261 4.61223 4.78507 4.86303 4.89688 4.95112 4.99366 5.04454 5.10342 5.13561 5.16789 5.18977 5.22644 5.32729 5.43514 5.58446 5.62662 5.65952 5.68798 5.77499 5.80030 5.82801 5.84136 5.86988 5.92381 5.95520 6.00360 6.05941 6.07832 6.39111 6.65439 6.74395 6.74977 7.06911 7.45665 7.92136 8.21652 8.44692 8.78454 9.04250 9.39117 9.86945 10.64964 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022190 B = 0.001736 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.542074 B =16125.774625 C =16809.035884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.429 3.571 11 O -0.599 6.599 12 C 0.129 3.871 13 N -0.725 5.725 14 C 0.705 3.295 15 O -0.596 6.596 16 N -0.744 5.744 17 C 0.154 3.846 18 H 0.101 0.899 19 C -0.133 4.133 20 C 0.035 3.965 21 N -0.511 5.511 22 C 0.078 3.922 23 C -0.111 4.111 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.112 4.112 28 C 0.031 3.969 29 H 0.274 0.726 30 H 0.396 0.604 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.406 0.594 34 H 0.394 0.606 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.083 0.917 39 H 0.042 0.958 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.060 0.940 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.071 0.929 50 H 0.053 0.947 51 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.552 -27.078 -0.975 28.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.184 5.184 10 C 0.214 3.786 11 O -0.485 6.485 12 C 0.000 4.000 13 N -0.382 5.382 14 C 0.405 3.595 15 O -0.474 6.474 16 N -0.400 5.400 17 C 0.048 3.952 18 H 0.119 0.881 19 C -0.173 4.173 20 C -0.093 4.093 21 N -0.236 5.236 22 C -0.031 4.031 23 C -0.149 4.149 24 C -0.157 4.157 25 C -0.158 4.158 26 C -0.157 4.157 27 C -0.150 4.150 28 C -0.097 4.097 29 H 0.084 0.916 30 H 0.230 0.770 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.243 0.757 34 H 0.227 0.773 35 H 0.101 0.899 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.060 0.940 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.082 0.918 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.071 0.929 51 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 8.799 -27.548 -0.904 28.933 hybrid contribution 1.175 1.854 -0.099 2.197 sum 9.974 -25.694 -1.003 27.580 Atomic orbital electron populations 1.69621 1.06000 1.28419 1.49375 1.25328 0.95672 0.99932 0.96823 0.85757 0.79655 0.80832 0.77826 1.19168 1.20618 1.20611 1.19776 0.93476 0.81999 1.48171 0.87648 1.41796 1.09502 1.04456 1.62646 1.19773 0.88289 0.85032 0.85487 1.90489 1.13777 1.86881 1.57393 1.20780 0.91208 0.84842 1.03139 1.44788 1.11201 1.03375 1.78823 1.15863 0.85256 0.80543 0.77854 1.90909 1.13979 1.84218 1.58317 1.45246 1.08796 1.04853 1.81097 1.21573 0.97970 0.79167 0.96473 0.88127 1.22946 0.97618 1.00048 0.96663 1.23251 0.96864 0.96723 0.92422 1.64859 1.19287 1.36804 1.02618 1.21851 0.87876 0.97254 0.96119 1.21568 0.96198 0.99445 0.97669 1.21528 0.96276 1.00555 0.97343 1.21545 1.01085 0.98501 0.94626 1.21530 0.96214 0.99326 0.98650 1.21585 0.96347 1.01121 0.95933 1.23156 0.97747 0.92819 0.95986 0.91636 0.77008 0.90017 0.90019 0.75680 0.77257 0.89882 0.90349 0.93760 0.89893 0.94041 0.91043 0.91988 0.92120 0.91819 0.92132 0.91868 0.92102 0.91787 0.91968 0.91012 0.92907 0.89132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.86 13.05 55.50 0.72 -23.14 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 8 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 9 N -0.55 -13.63 5.29 -10.96 -0.06 -13.69 16 10 C 0.43 9.83 7.85 -10.99 -0.09 9.75 16 11 O -0.60 -15.29 15.24 5.54 0.08 -15.20 16 12 C 0.13 2.40 6.15 -5.20 -0.03 2.37 16 13 N -0.72 -12.12 5.53 -66.41 -0.37 -12.49 16 14 C 0.71 11.28 8.57 -86.91 -0.74 10.54 16 15 O -0.60 -11.49 15.99 5.29 0.08 -11.40 16 16 N -0.74 -8.75 5.06 -57.35 -0.29 -9.04 16 17 C 0.15 1.62 3.34 -66.57 -0.22 1.40 16 18 H 0.10 1.22 7.56 -51.93 -0.39 0.83 16 19 C -0.13 -1.31 6.78 -24.87 -0.17 -1.48 16 20 C 0.03 0.29 5.46 -1.90 -0.01 0.28 16 21 N -0.51 -4.19 5.11 -222.51 -1.14 -5.33 16 22 C 0.08 0.56 1.62 -67.71 -0.11 0.45 16 23 C -0.11 -0.73 5.08 -26.73 -0.14 -0.87 16 24 C -0.12 -0.69 5.92 -26.73 -0.16 -0.85 16 25 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 26 C -0.12 -0.70 5.92 -26.73 -0.16 -0.86 16 27 C -0.11 -0.75 5.13 -26.73 -0.14 -0.89 16 28 C 0.03 0.26 5.22 -2.76 -0.01 0.25 16 29 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.40 9.46 7.90 -40.82 -0.32 9.14 16 31 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 33 H 0.41 6.61 7.45 -40.82 -0.30 6.31 16 34 H 0.39 3.86 8.35 -40.82 -0.34 3.52 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.88 8.05 -51.93 -0.42 0.47 16 37 H 0.04 0.38 7.99 -51.93 -0.41 -0.04 16 38 H 0.08 0.64 7.65 -51.93 -0.40 0.24 16 39 H 0.04 0.33 8.00 -51.93 -0.42 -0.08 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.42 6.95 -51.93 -0.36 0.06 16 42 H 0.06 0.37 8.14 -51.92 -0.42 -0.06 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.43 7.15 -51.93 -0.37 0.06 16 49 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.05 0.43 7.07 -51.93 -0.37 0.06 16 51 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 401.59 15.07 6.05 6.05 Total: -1.00 -30.96 401.59 -11.00 -41.95 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -8.69 Total: 15.38 kcal Atomic # 6 Polarization: 13.78 SS G_CDS: -2.38 Total: 11.41 kcal Atomic # 7 Polarization: -62.55 SS G_CDS: -1.13 Total: -63.68 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: 0.17 Total: -26.61 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -30.96 -11.00 -41.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595780700.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.709 kcal (2) G-P(sol) polarization free energy of solvation -30.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds