Wall clock time and date at job start Tue Mar 31 2020 22:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 119.99918 * 2 1 4 4 H 1.48505 * 109.47450 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47445 * 300.00131 * 3 2 1 6 6 H 1.48506 * 109.47135 * 60.00500 * 3 2 1 7 7 C 1.38951 * 120.00410 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00237 * 180.02562 * 7 2 1 9 9 N 1.37097 * 119.99616 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00290 * 180.02562 * 9 7 2 11 11 O 1.21296 * 119.99495 * 359.97438 * 10 9 7 12 12 C 1.50698 * 120.00496 * 180.27780 * 10 9 7 13 13 N 1.46498 * 109.47030 * 179.72320 * 12 10 9 14 14 C 1.34780 * 119.99730 * 179.97438 * 13 12 10 15 15 O 1.21591 * 120.00220 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99905 * 180.02562 * 14 13 12 17 17 C 1.46500 * 119.99906 * 179.97438 * 16 14 13 18 18 H 1.09001 * 110.27350 * 327.09129 * 17 16 14 19 19 C 1.54598 * 110.30922 * 89.28243 * 17 16 14 20 20 C 1.54937 * 102.92167 * 96.95384 * 19 17 16 21 21 N 1.48533 * 103.22262 * 37.41865 * 20 19 17 22 22 C 1.46902 * 110.99962 * 200.27548 * 21 20 19 23 23 C 1.52996 * 109.47284 * 299.05826 * 22 21 20 24 24 C 1.53000 * 109.47398 * 180.02562 * 23 22 21 25 25 C 1.52992 * 109.47522 * 59.99753 * 24 23 22 26 26 C 1.53010 * 109.47043 * 300.00401 * 25 24 23 27 27 C 1.52998 * 109.47032 * 59.99728 * 26 25 24 28 28 C 1.47896 * 105.82233 * 320.78974 * 21 20 19 29 29 H 0.96992 * 119.99911 * 359.97438 * 1 2 3 30 30 H 0.97001 * 120.00702 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.46563 * 299.72202 * 12 10 9 32 32 H 1.08995 * 109.47489 * 59.71771 * 12 10 9 33 33 H 0.96992 * 120.00570 * 0.02562 * 13 12 10 34 34 H 0.96994 * 119.99754 * 359.97438 * 16 14 13 35 35 H 1.08998 * 110.72833 * 215.31907 * 19 17 16 36 36 H 1.09003 * 110.72286 * 338.60193 * 19 17 16 37 37 H 1.08991 * 110.67396 * 278.98499 * 20 19 17 38 38 H 1.08999 * 110.80916 * 155.91514 * 20 19 17 39 39 H 1.09003 * 109.47338 * 59.05894 * 22 21 20 40 40 H 1.08997 * 109.47204 * 299.99880 * 23 22 21 41 41 H 1.09001 * 109.47319 * 59.99638 * 23 22 21 42 42 H 1.09013 * 109.46760 * 299.99603 * 24 23 22 43 43 H 1.08999 * 109.47140 * 180.02562 * 24 23 22 44 44 H 1.08998 * 109.47362 * 180.02562 * 25 24 23 45 45 H 1.08999 * 109.47417 * 60.00201 * 25 24 23 46 46 H 1.08999 * 109.46851 * 300.00147 * 26 25 24 47 47 H 1.08995 * 109.46718 * 179.97438 * 26 25 24 48 48 H 1.08992 * 109.47038 * 180.02562 * 27 26 25 49 49 H 1.08997 * 109.47033 * 59.99946 * 27 26 25 50 50 H 1.09001 * 109.91975 * 265.97813 * 28 21 20 51 51 H 1.08997 * 109.92085 * 144.68332 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3965 -1.2124 6 1 1.8894 2.3964 1.2126 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2103 -3.5578 -0.0010 12 6 1.2439 -4.8630 -0.0069 13 7 2.1960 -5.9764 -0.0122 14 6 1.7467 -7.2471 -0.0179 15 8 0.5513 -7.4694 -0.0180 16 7 2.6226 -8.2715 -0.0223 17 6 2.1343 -9.6527 -0.0279 18 1 1.1992 -9.7249 0.5276 19 6 1.9380 -10.1466 -1.4796 20 6 3.2508 -10.9190 -1.7633 21 7 3.5422 -11.5815 -0.4663 22 6 4.9584 -11.9615 -0.3758 23 6 5.2940 -12.9489 -1.4953 24 6 6.7688 -13.3452 -1.4006 25 6 7.0344 -14.0021 -0.0447 26 6 6.6988 -13.0146 1.0749 27 6 5.2240 -12.6184 0.9803 28 6 3.1903 -10.5954 0.5783 29 1 -0.4849 0.8400 0.0004 30 1 0.3535 -2.3907 0.0002 31 1 0.6172 -4.9249 0.8829 32 1 0.6172 -4.9164 -0.8970 33 1 3.1496 -5.7992 -0.0110 34 1 3.5762 -8.0942 -0.0218 35 1 1.0768 -10.8113 -1.5478 36 1 1.8311 -9.3038 -2.1626 37 1 4.0518 -10.2306 -2.0322 38 1 3.1021 -11.6599 -2.5488 39 1 5.5804 -11.0722 -0.4771 40 1 4.6720 -13.8382 -1.3939 41 1 5.1044 -12.4811 -2.4613 42 1 7.3912 -12.4559 -1.5018 43 1 7.0080 -14.0483 -2.1985 44 1 8.0852 -14.2840 0.0229 45 1 6.4121 -14.8912 0.0565 46 1 7.3211 -12.1255 0.9737 47 1 6.8876 -13.4828 2.0409 48 1 4.9850 -11.9147 1.7775 49 1 4.6017 -13.5076 1.0813 50 1 4.0748 -10.0267 0.8652 51 1 2.7764 -11.1067 1.4474 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595780700.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:53 Heat of formation + Delta-G solvation = -102.182996 kcal Electronic energy + Delta-G solvation = -29134.627262 eV Core-core repulsion = 25066.838246 eV Total energy + Delta-G solvation = -4067.789016 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.50289 -40.59996 -39.93128 -38.27622 -36.24636 -35.26972 -35.18993 -33.37849 -32.33754 -31.81611 -29.80849 -29.28036 -28.19932 -26.30465 -23.72778 -23.56833 -22.43266 -21.65184 -21.40120 -21.16531 -20.62039 -20.12232 -19.58179 -17.81641 -17.47468 -17.15884 -16.86169 -16.66332 -16.39153 -15.98531 -15.69377 -15.55765 -15.25947 -15.15182 -14.99092 -14.90192 -14.52127 -14.29500 -13.95060 -13.78396 -13.63049 -13.55342 -13.12002 -12.95507 -12.86674 -12.71242 -12.62751 -12.44870 -12.38776 -12.11879 -12.11560 -12.05124 -11.83729 -11.58262 -11.42637 -11.40494 -11.11834 -10.85545 -10.56218 -10.42707 -10.10547 -9.85563 -9.41809 -8.51355 -6.01568 1.34909 1.42329 1.53560 1.59937 1.89257 2.09876 2.28226 2.87562 3.06965 3.15886 3.33318 3.51055 3.63309 3.83923 3.93413 4.06913 4.12347 4.20803 4.28287 4.31300 4.36108 4.42645 4.42941 4.46143 4.51830 4.60188 4.63304 4.64564 4.73104 4.84763 4.92610 5.00202 5.02285 5.09910 5.14462 5.17433 5.29631 5.30142 5.30980 5.35101 5.35972 5.38720 5.50886 5.56708 5.88503 5.90735 5.93289 6.11753 6.47763 6.99841 7.03316 7.42351 7.52286 7.94174 8.65750 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022190 B = 0.001736 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.542074 B =16125.774625 C =16809.035884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.011 4.011 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.086 0.914 9 N -0.559 5.559 10 C 0.434 3.566 11 O -0.625 6.625 12 C 0.142 3.858 13 N -0.724 5.724 14 C 0.706 3.294 15 O -0.628 6.628 16 N -0.726 5.726 17 C 0.152 3.848 18 H 0.084 0.916 19 C -0.131 4.131 20 C 0.042 3.958 21 N -0.514 5.514 22 C 0.078 3.922 23 C -0.108 4.108 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.118 4.118 27 C -0.109 4.109 28 C 0.040 3.960 29 H 0.280 0.720 30 H 0.399 0.601 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.409 0.591 34 H 0.406 0.594 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.044 0.956 38 H 0.092 0.908 39 H 0.037 0.963 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.060 0.940 49 H 0.067 0.933 50 H 0.060 0.940 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.480 -27.857 -0.976 29.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.212 4.212 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.513 6.513 12 C 0.014 3.986 13 N -0.382 5.382 14 C 0.406 3.594 15 O -0.510 6.510 16 N -0.382 5.382 17 C 0.046 3.954 18 H 0.102 0.898 19 C -0.170 4.170 20 C -0.085 4.085 21 N -0.238 5.238 22 C -0.030 4.030 23 C -0.146 4.146 24 C -0.155 4.155 25 C -0.157 4.157 26 C -0.156 4.156 27 C -0.147 4.147 28 C -0.089 4.089 29 H 0.089 0.911 30 H 0.233 0.767 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.247 0.753 34 H 0.242 0.758 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.063 0.937 38 H 0.110 0.890 39 H 0.055 0.945 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.082 0.918 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.086 0.914 50 H 0.078 0.922 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.748 -28.368 -0.907 30.010 hybrid contribution 0.891 2.004 -0.101 2.195 sum 10.639 -26.365 -1.008 28.448 Atomic orbital electron populations 1.69685 1.06997 1.29571 1.49304 1.26132 0.96543 1.02685 0.95802 0.84805 0.78105 0.76720 0.78295 1.19452 1.19657 1.19639 1.19774 0.92960 0.83537 1.50348 0.89572 1.41840 1.09603 1.04590 1.63425 1.20422 0.88107 0.85913 0.83487 1.90467 1.15190 1.87568 1.58052 1.20574 0.90981 0.83052 1.04026 1.44701 1.10961 1.03305 1.79229 1.15934 0.85182 0.80719 0.77558 1.90888 1.15572 1.84624 1.59886 1.45141 1.08949 1.04509 1.79595 1.21677 0.98071 0.78620 0.97039 0.89778 1.22881 0.98694 0.99706 0.95705 1.23196 0.95843 0.96741 0.92768 1.64901 1.20066 1.36494 1.02371 1.21885 0.87069 0.97270 0.96805 1.21538 0.96731 0.99004 0.97286 1.21519 0.95556 1.00659 0.97792 1.21543 1.01533 0.98333 0.94250 1.21522 0.95504 0.99395 0.99153 1.21556 0.96884 1.00793 0.95448 1.23084 0.97255 0.92453 0.96068 0.91072 0.76689 0.89054 0.89092 0.75317 0.75821 0.89693 0.91852 0.93745 0.88996 0.94504 0.91433 0.92083 0.92324 0.91147 0.91455 0.91828 0.92304 0.91231 0.92148 0.91423 0.92225 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.58 13.05 21.66 0.28 -48.29 16 2 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 3 Si 1.00 41.67 29.55 68.60 2.03 43.70 16 4 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 7 C -0.34 -18.54 9.68 84.04 0.81 -17.72 16 8 H 0.09 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -28.06 5.29 -306.98 -1.62 -29.69 16 10 C 0.43 19.98 7.85 87.66 0.69 20.67 16 11 O -0.62 -32.11 15.24 -3.08 -0.05 -32.16 16 12 C 0.14 5.24 6.15 85.63 0.53 5.76 16 13 N -0.72 -23.76 5.53 -482.29 -2.67 -26.43 16 14 C 0.71 22.14 8.57 179.05 1.53 23.67 16 15 O -0.63 -24.04 15.99 -4.00 -0.06 -24.11 16 16 N -0.73 -16.41 5.06 -453.60 -2.30 -18.70 16 17 C 0.15 3.06 3.34 45.87 0.15 3.21 16 18 H 0.08 2.03 7.56 -2.39 -0.02 2.01 16 19 C -0.13 -2.47 6.78 31.80 0.22 -2.26 16 20 C 0.04 0.64 5.46 86.65 0.47 1.11 16 21 N -0.51 -7.66 5.11 -857.89 -4.38 -12.04 16 22 C 0.08 1.02 1.62 44.91 0.07 1.09 16 23 C -0.11 -1.26 5.08 30.59 0.16 -1.11 16 24 C -0.12 -1.16 5.92 30.59 0.18 -0.98 16 25 C -0.12 -1.11 5.92 30.60 0.18 -0.93 16 26 C -0.12 -1.20 5.92 30.60 0.18 -1.02 16 27 C -0.11 -1.30 5.13 30.59 0.16 -1.14 16 28 C 0.04 0.61 5.22 86.45 0.45 1.06 16 29 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 30 H 0.40 19.27 7.90 -92.71 -0.73 18.54 16 31 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 32 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 33 H 0.41 13.05 7.45 -92.71 -0.69 12.36 16 34 H 0.41 7.39 8.35 -92.71 -0.77 6.61 16 35 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.06 1.41 8.05 -2.39 -0.02 1.39 16 37 H 0.04 0.69 7.99 -2.39 -0.02 0.67 16 38 H 0.09 1.26 7.65 -2.39 -0.02 1.25 16 39 H 0.04 0.53 8.00 -2.39 -0.02 0.51 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.06 0.72 6.95 -2.39 -0.02 0.71 16 42 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 43 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 44 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 47 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.06 0.74 7.15 -2.39 -0.02 0.72 16 49 H 0.07 0.87 8.14 -2.39 -0.02 0.86 16 50 H 0.06 0.85 7.07 -2.39 -0.02 0.84 16 51 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -65.36 401.59 -3.76 -69.12 By element: Atomic # 1 Polarization: 48.52 SS G_CDS: -1.24 Total: 47.27 kcal Atomic # 6 Polarization: 25.08 SS G_CDS: 6.25 Total: 31.33 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -10.69 Total: -135.15 kcal Atomic # 8 Polarization: -56.16 SS G_CDS: -0.11 Total: -56.27 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -65.36 -3.76 -69.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595780700.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.060 kcal (2) G-P(sol) polarization free energy of solvation -65.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds