Wall clock time and date at job start Tue Mar 31 2020 21:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99580 * 2 1 4 4 C 1.53005 * 109.46567 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47105 * 64.99970 * 4 3 2 6 6 C 1.46500 * 119.99704 * 89.99793 * 5 4 3 7 7 C 1.50706 * 109.47109 * 95.20499 * 6 5 4 8 8 H 1.07999 * 119.99859 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99860 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99897 * 359.72115 * 9 7 6 11 11 Si 1.86797 * 119.99582 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47198 * 90.00426 * 11 9 7 13 13 H 1.48502 * 109.47199 * 209.99827 * 11 9 7 14 14 H 1.48495 * 109.47611 * 330.00291 * 11 9 7 15 15 C 1.34779 * 120.00304 * 270.00054 * 5 4 3 16 16 O 1.21279 * 119.99849 * 5.23067 * 15 5 4 17 17 C 1.50694 * 120.00139 * 185.23674 * 15 5 4 18 18 H 1.09007 * 109.70339 * 333.55202 * 17 15 5 19 19 C 1.53059 * 109.70590 * 212.93618 * 17 15 5 20 20 C 1.50983 * 110.43594 * 192.69643 * 19 17 15 21 21 O 1.21279 * 118.45777 * 196.82302 * 20 19 17 22 22 N 1.33525 * 123.26489 * 15.63692 * 20 19 17 23 23 C 1.45453 * 123.69830 * 358.64823 * 22 20 19 24 24 H 1.09002 * 108.20250 * 261.76229 * 23 22 20 25 25 C 1.52465 * 110.54635 * 143.43839 * 23 22 20 26 26 C 1.52974 * 109.97246 * 294.83717 * 25 23 22 27 27 C 1.53069 * 109.14595 * 300.39295 * 26 25 23 28 28 C 1.52916 * 109.23142 * 60.96064 * 27 26 25 29 29 C 1.52684 * 110.82837 * 20.24357 * 23 22 20 30 30 H 1.08997 * 109.93213 * 187.44089 * 29 23 22 31 31 H 1.09002 * 109.47649 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47331 * 299.99948 * 1 2 3 33 33 H 1.08998 * 109.47662 * 59.99794 * 1 2 3 34 34 H 1.09001 * 109.47410 * 60.00587 * 3 2 1 35 35 H 1.08992 * 109.47476 * 299.99895 * 3 2 1 36 36 H 1.09000 * 109.47080 * 304.99869 * 4 3 2 37 37 H 1.08995 * 109.46885 * 184.99993 * 4 3 2 38 38 H 1.08998 * 109.47469 * 335.20172 * 6 5 4 39 39 H 1.09002 * 109.47180 * 215.20392 * 6 5 4 40 40 H 0.97002 * 119.99229 * 179.97438 * 10 9 7 41 41 H 1.08997 * 109.35897 * 311.87322 * 19 17 15 42 42 H 1.09008 * 109.36375 * 71.46063 * 19 17 15 43 43 H 0.97000 * 118.15376 * 178.66093 * 22 20 19 44 44 H 1.08995 * 109.38828 * 54.99639 * 25 23 22 45 45 H 1.08998 * 109.38407 * 174.78962 * 25 23 22 46 46 H 1.09000 * 109.52215 * 60.29230 * 26 25 23 47 47 H 1.09000 * 109.52402 * 180.42719 * 26 25 23 48 48 H 1.09004 * 109.51278 * 180.88170 * 27 26 25 49 49 H 1.08994 * 109.51517 * 300.98581 * 27 26 25 50 50 H 1.09001 * 109.41831 * 179.25930 * 28 27 26 51 51 H 1.09004 * 109.41537 * 59.45033 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.2882 1.3998 -2.4129 7 6 5.7695 1.6744 -2.4516 8 1 6.4143 1.2674 -1.6867 9 6 6.3016 2.4453 -3.4633 10 7 5.5172 2.9364 -4.3978 11 14 8.1376 2.7862 -3.5107 12 1 8.8177 1.7264 -4.2979 13 1 8.3797 4.1066 -4.1457 14 1 8.6752 2.7965 -2.1265 15 6 4.0958 -0.7760 -1.3332 16 8 3.7481 -1.4739 -0.4042 17 6 4.6613 -1.4070 -2.5793 18 1 4.4840 -0.7548 -3.4345 19 6 3.9959 -2.7646 -2.8180 20 6 4.7524 -3.5457 -3.8654 21 8 4.2018 -4.4889 -4.3927 22 7 5.9907 -3.2362 -4.2575 23 6 6.7394 -2.0997 -3.7442 24 1 6.6457 -1.2803 -4.4569 25 6 8.2176 -2.4487 -3.6112 26 6 8.4042 -3.5382 -2.5538 27 6 7.8708 -3.0317 -1.2115 28 6 6.3797 -2.7209 -1.3470 29 6 6.1707 -1.6348 -2.4056 30 1 6.6538 -0.7073 -2.0986 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8464 -0.8899 36 1 3.8507 0.5685 0.8427 37 1 3.9784 2.1765 0.0902 38 1 3.7458 2.3423 -2.3386 39 1 3.9911 0.8806 -3.3241 40 1 5.8916 3.4790 -5.1093 41 1 4.0017 -3.3378 -1.8909 42 1 2.9654 -2.6106 -3.1386 43 1 6.4149 -3.8010 -4.9223 44 1 8.5924 -2.8069 -4.5700 45 1 8.7739 -1.5596 -3.3145 46 1 7.8547 -4.4317 -2.8505 47 1 9.4636 -3.7766 -2.4594 48 1 8.0151 -3.7980 -0.4498 49 1 8.4072 -2.1274 -0.9244 50 1 5.9936 -2.3724 -0.3890 51 1 5.8468 -3.6242 -1.6444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597136012.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:43 Heat of formation + Delta-G solvation = -134.152925 kcal Electronic energy + Delta-G solvation = -32789.389140 eV Core-core repulsion = 28687.921052 eV Total energy + Delta-G solvation = -4101.468088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.98693 -38.93738 -37.74234 -37.26192 -34.99806 -33.94908 -33.40860 -32.65046 -30.04541 -29.43457 -28.94649 -27.06525 -26.16272 -24.91806 -23.12166 -22.68447 -22.55458 -21.68335 -20.40478 -18.37652 -17.87831 -16.72934 -16.60488 -16.40965 -16.10682 -15.81764 -15.61620 -15.39184 -15.13097 -14.94734 -14.53650 -14.44623 -13.95015 -13.71856 -13.38789 -13.27112 -12.85919 -12.75286 -12.43310 -12.33981 -12.22253 -12.05821 -11.80260 -11.68414 -11.55813 -11.45958 -11.31267 -11.05700 -10.92618 -10.80604 -10.71366 -10.67841 -10.24182 -10.13108 -10.03810 -9.88989 -9.75332 -9.62190 -9.33660 -8.82954 -8.70043 -8.57558 -7.70033 -6.25978 -4.33801 2.95409 3.13210 3.23297 3.24414 3.44575 3.58623 3.87299 4.16887 4.24623 4.74089 4.82673 4.87655 5.03987 5.06699 5.19227 5.29793 5.37198 5.40822 5.44050 5.46864 5.56678 5.59505 5.63155 5.65747 5.70516 5.77336 5.78365 5.80269 5.83796 5.93068 6.05734 6.09417 6.12862 6.20094 6.25114 6.34430 6.38225 6.40507 6.47853 6.60182 6.69827 6.74524 7.05627 7.14972 7.44384 7.57972 7.62873 7.70074 7.98234 8.34859 8.50777 8.73066 9.09708 9.34574 10.80248 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.006443 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.595560 B = 4344.993075 C = 6523.459258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.366 6.366 3 C 0.044 3.956 4 C 0.124 3.876 5 N -0.594 5.594 6 C 0.237 3.763 7 C -0.535 4.535 8 H 0.063 0.937 9 C 0.068 3.932 10 N -0.888 5.888 11 Si 0.888 3.112 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.530 3.470 16 O -0.550 6.550 17 C -0.101 4.101 18 H 0.107 0.893 19 C -0.121 4.121 20 C 0.528 3.472 21 O -0.570 6.570 22 N -0.709 5.709 23 C 0.145 3.855 24 H 0.080 0.920 25 C -0.127 4.127 26 C -0.117 4.117 27 C -0.118 4.118 28 C -0.120 4.120 29 C -0.077 4.077 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.033 0.967 33 H 0.035 0.965 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.034 0.966 39 H 0.036 0.964 40 H 0.265 0.735 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.393 0.607 44 H 0.065 0.935 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.058 0.942 49 H 0.063 0.937 50 H 0.075 0.925 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.020 -5.168 4.321 6.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.284 6.284 3 C -0.034 4.034 4 C 0.000 4.000 5 N -0.325 5.325 6 C 0.117 3.883 7 C -0.573 4.573 8 H 0.081 0.919 9 C -0.136 4.136 10 N -0.526 5.526 11 Si 0.715 3.285 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.197 1.197 15 C 0.318 3.682 16 O -0.429 6.429 17 C -0.123 4.123 18 H 0.125 0.875 19 C -0.161 4.161 20 C 0.315 3.685 21 O -0.450 6.450 22 N -0.360 5.360 23 C 0.040 3.960 24 H 0.098 0.902 25 C -0.165 4.165 26 C -0.155 4.155 27 C -0.156 4.156 28 C -0.157 4.157 29 C -0.096 4.096 30 H 0.132 0.868 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.128 0.872 42 H 0.114 0.886 43 H 0.228 0.772 44 H 0.084 0.916 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.082 0.918 50 H 0.093 0.907 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.549 -5.883 4.531 7.446 hybrid contribution 0.986 0.721 -0.545 1.338 sum 1.535 -5.162 3.986 6.701 Atomic orbital electron populations 1.22670 0.82619 1.02132 0.99123 1.88147 1.18089 1.27029 1.95138 1.23051 0.95514 0.85180 0.99625 1.21299 0.91052 0.99233 0.88443 1.48080 1.64753 1.06079 1.13622 1.19430 0.96201 0.90151 0.82484 1.21469 0.92622 1.32477 1.10761 0.91870 1.24913 0.97967 0.95373 0.95308 1.69917 1.35211 1.34170 1.13334 0.86646 0.85365 0.78011 0.78445 1.20255 1.21167 1.19730 1.19995 0.77611 0.82289 0.88330 1.90610 1.50197 1.61903 1.40160 1.21436 0.95657 0.96080 0.99081 0.87458 1.21711 0.99635 0.95698 0.99055 1.20386 0.81370 0.84065 0.82633 1.90705 1.67032 1.31070 1.56192 1.45560 1.15765 1.30994 1.43689 1.20739 0.90846 0.87974 0.96413 0.90234 1.21752 0.95221 1.00157 0.99408 1.21517 1.00381 0.98259 0.95340 1.21530 0.96440 1.00907 0.96695 1.21719 0.95725 0.98528 0.99733 1.21395 0.93860 1.00583 0.93742 0.86774 0.90176 0.94863 0.94673 0.93476 0.93303 0.90311 0.89090 0.94768 0.94663 0.92495 0.87174 0.88604 0.77153 0.91600 0.90033 0.92078 0.92228 0.92318 0.91804 0.90665 0.92136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.37 -6.36 9.28 -48.38 -0.45 -6.80 16 3 C 0.04 0.69 6.28 37.16 0.23 0.92 16 4 C 0.12 2.12 5.82 -4.04 -0.02 2.09 16 5 N -0.59 -11.53 2.45 -175.06 -0.43 -11.96 16 6 C 0.24 5.12 4.86 -5.19 -0.03 5.10 16 7 C -0.53 -12.23 8.11 -34.44 -0.28 -12.51 16 8 H 0.06 1.45 6.84 -52.49 -0.36 1.09 16 9 C 0.07 1.62 5.46 -17.82 -0.10 1.53 16 10 N -0.89 -22.71 13.29 55.43 0.74 -21.97 16 11 Si 0.89 18.69 29.54 -169.99 -5.02 13.67 16 12 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 13 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 14 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 15 C 0.53 10.27 5.89 -10.99 -0.06 10.21 16 16 O -0.55 -11.54 13.50 -7.59 -0.10 -11.64 16 17 C -0.10 -1.78 1.76 -91.42 -0.16 -1.94 16 18 H 0.11 2.05 5.79 -51.92 -0.30 1.75 16 19 C -0.12 -2.05 4.58 -27.71 -0.13 -2.18 16 20 C 0.53 8.99 6.83 -11.40 -0.08 8.91 16 21 O -0.57 -11.44 17.80 5.56 0.10 -11.34 16 22 N -0.71 -10.18 4.61 -55.10 -0.25 -10.43 16 23 C 0.15 2.07 2.92 -68.93 -0.20 1.86 16 24 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 25 C -0.13 -1.52 5.52 -27.02 -0.15 -1.67 16 26 C -0.12 -1.33 5.84 -26.71 -0.16 -1.49 16 27 C -0.12 -1.48 5.92 -26.74 -0.16 -1.64 16 28 C -0.12 -1.78 4.27 -26.72 -0.11 -1.89 16 29 C -0.08 -1.22 2.09 -90.40 -0.19 -1.41 16 30 H 0.11 2.02 6.07 -51.93 -0.32 1.70 16 31 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 1.39 7.50 -51.93 -0.39 1.00 16 37 H 0.09 1.45 8.07 -51.93 -0.42 1.03 16 38 H 0.03 0.78 8.03 -51.93 -0.42 0.37 16 39 H 0.04 0.81 6.17 -51.93 -0.32 0.49 16 40 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 41 H 0.11 1.92 6.11 -51.93 -0.32 1.60 16 42 H 0.10 1.64 8.14 -51.92 -0.42 1.21 16 43 H 0.39 5.05 8.67 -40.82 -0.35 4.69 16 44 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.06 0.72 7.84 -51.93 -0.41 0.31 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 48 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.07 1.25 6.84 -51.93 -0.36 0.90 16 51 H 0.06 0.93 5.40 -51.93 -0.28 0.65 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -28.55 388.30 -8.49 -37.04 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -8.44 Total: 10.17 kcal Atomic # 6 Polarization: 7.90 SS G_CDS: -0.48 Total: 7.42 kcal Atomic # 7 Polarization: -44.42 SS G_CDS: 0.05 Total: -44.37 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.45 Total: -29.79 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -28.55 -8.49 -37.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597136012.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.113 kcal (2) G-P(sol) polarization free energy of solvation -28.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds