Wall clock time and date at job start Tue Mar 31 2020 21:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99580 * 2 1 4 4 C 1.53005 * 109.46567 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47105 * 64.99970 * 4 3 2 6 6 C 1.46500 * 119.99704 * 89.99793 * 5 4 3 7 7 C 1.50706 * 109.47109 * 95.20499 * 6 5 4 8 8 H 1.07999 * 119.99859 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99860 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99897 * 359.72115 * 9 7 6 11 11 Si 1.86797 * 119.99582 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47198 * 90.00426 * 11 9 7 13 13 H 1.48502 * 109.47199 * 209.99827 * 11 9 7 14 14 H 1.48495 * 109.47611 * 330.00291 * 11 9 7 15 15 C 1.34779 * 120.00304 * 270.00054 * 5 4 3 16 16 O 1.21279 * 119.99849 * 5.23067 * 15 5 4 17 17 C 1.50694 * 120.00139 * 185.23674 * 15 5 4 18 18 H 1.09007 * 109.70339 * 333.55202 * 17 15 5 19 19 C 1.53059 * 109.70590 * 212.93618 * 17 15 5 20 20 C 1.50983 * 110.43594 * 192.69643 * 19 17 15 21 21 O 1.21279 * 118.45777 * 196.82302 * 20 19 17 22 22 N 1.33525 * 123.26489 * 15.63692 * 20 19 17 23 23 C 1.45453 * 123.69830 * 358.64823 * 22 20 19 24 24 H 1.09002 * 108.20250 * 261.76229 * 23 22 20 25 25 C 1.52465 * 110.54635 * 143.43839 * 23 22 20 26 26 C 1.52974 * 109.97246 * 294.83717 * 25 23 22 27 27 C 1.53069 * 109.14595 * 300.39295 * 26 25 23 28 28 C 1.52916 * 109.23142 * 60.96064 * 27 26 25 29 29 C 1.52684 * 110.82837 * 20.24357 * 23 22 20 30 30 H 1.08997 * 109.93213 * 187.44089 * 29 23 22 31 31 H 1.09002 * 109.47649 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47331 * 299.99948 * 1 2 3 33 33 H 1.08998 * 109.47662 * 59.99794 * 1 2 3 34 34 H 1.09001 * 109.47410 * 60.00587 * 3 2 1 35 35 H 1.08992 * 109.47476 * 299.99895 * 3 2 1 36 36 H 1.09000 * 109.47080 * 304.99869 * 4 3 2 37 37 H 1.08995 * 109.46885 * 184.99993 * 4 3 2 38 38 H 1.08998 * 109.47469 * 335.20172 * 6 5 4 39 39 H 1.09002 * 109.47180 * 215.20392 * 6 5 4 40 40 H 0.97002 * 119.99229 * 179.97438 * 10 9 7 41 41 H 1.08997 * 109.35897 * 311.87322 * 19 17 15 42 42 H 1.09008 * 109.36375 * 71.46063 * 19 17 15 43 43 H 0.97000 * 118.15376 * 178.66093 * 22 20 19 44 44 H 1.08995 * 109.38828 * 54.99639 * 25 23 22 45 45 H 1.08998 * 109.38407 * 174.78962 * 25 23 22 46 46 H 1.09000 * 109.52215 * 60.29230 * 26 25 23 47 47 H 1.09000 * 109.52402 * 180.42719 * 26 25 23 48 48 H 1.09004 * 109.51278 * 180.88170 * 27 26 25 49 49 H 1.08994 * 109.51517 * 300.98581 * 27 26 25 50 50 H 1.09001 * 109.41831 * 179.25930 * 28 27 26 51 51 H 1.09004 * 109.41537 * 59.45033 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.2882 1.3998 -2.4129 7 6 5.7695 1.6744 -2.4516 8 1 6.4143 1.2674 -1.6867 9 6 6.3016 2.4453 -3.4633 10 7 5.5172 2.9364 -4.3978 11 14 8.1376 2.7862 -3.5107 12 1 8.8177 1.7264 -4.2979 13 1 8.3797 4.1066 -4.1457 14 1 8.6752 2.7965 -2.1265 15 6 4.0958 -0.7760 -1.3332 16 8 3.7481 -1.4739 -0.4042 17 6 4.6613 -1.4070 -2.5793 18 1 4.4840 -0.7548 -3.4345 19 6 3.9959 -2.7646 -2.8180 20 6 4.7524 -3.5457 -3.8654 21 8 4.2018 -4.4889 -4.3927 22 7 5.9907 -3.2362 -4.2575 23 6 6.7394 -2.0997 -3.7442 24 1 6.6457 -1.2803 -4.4569 25 6 8.2176 -2.4487 -3.6112 26 6 8.4042 -3.5382 -2.5538 27 6 7.8708 -3.0317 -1.2115 28 6 6.3797 -2.7209 -1.3470 29 6 6.1707 -1.6348 -2.4056 30 1 6.6538 -0.7073 -2.0986 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.6886 1.8464 0.8900 35 1 1.6886 1.8464 -0.8899 36 1 3.8507 0.5685 0.8427 37 1 3.9784 2.1765 0.0902 38 1 3.7458 2.3423 -2.3386 39 1 3.9911 0.8806 -3.3241 40 1 5.8916 3.4790 -5.1093 41 1 4.0017 -3.3378 -1.8909 42 1 2.9654 -2.6106 -3.1386 43 1 6.4149 -3.8010 -4.9223 44 1 8.5924 -2.8069 -4.5700 45 1 8.7739 -1.5596 -3.3145 46 1 7.8547 -4.4317 -2.8505 47 1 9.4636 -3.7766 -2.4594 48 1 8.0151 -3.7980 -0.4498 49 1 8.4072 -2.1274 -0.9244 50 1 5.9936 -2.3724 -0.3890 51 1 5.8468 -3.6242 -1.6444 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597136012.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:41 Heat of formation + Delta-G solvation = -150.777641 kcal Electronic energy + Delta-G solvation = -32790.110041 eV Core-core repulsion = 28687.921052 eV Total energy + Delta-G solvation = -4102.188989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.34236 -40.44031 -39.05484 -38.54460 -36.62607 -35.19185 -34.76427 -34.40534 -31.40433 -30.64764 -30.21036 -28.80060 -27.34000 -26.25441 -24.87464 -23.92912 -23.72291 -23.03700 -21.54382 -19.83415 -19.31302 -18.42668 -18.00852 -17.90403 -17.43296 -17.15331 -16.97573 -16.64714 -16.57262 -16.23500 -16.06836 -15.84673 -15.08919 -15.04627 -14.74832 -14.59774 -14.28022 -14.19070 -13.99965 -13.52995 -13.45105 -13.40797 -13.23169 -13.01566 -12.97218 -12.86097 -12.65701 -12.57513 -12.40353 -12.21656 -11.98816 -11.84946 -11.79643 -11.58502 -11.33260 -11.21739 -11.16825 -11.08160 -10.56830 -10.52433 -10.23825 -9.97695 -9.33220 -8.11074 -6.24517 1.47066 1.51733 1.54718 1.58730 1.90522 2.27285 2.36364 2.51129 2.99173 3.20191 3.47143 3.60576 3.65139 3.72480 4.00487 4.05566 4.14010 4.19714 4.24218 4.25958 4.36449 4.44497 4.47310 4.52360 4.53970 4.55411 4.55888 4.67713 4.69760 4.72739 4.83419 4.85933 4.94149 4.99396 5.04136 5.05072 5.16061 5.25697 5.27211 5.33222 5.34001 5.40877 5.52981 5.75736 5.85411 5.93536 6.14482 6.29832 6.36549 6.67817 6.92340 7.17758 7.42820 7.56057 8.94326 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.007866 B = 0.006443 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3558.595560 B = 4344.993075 C = 6523.459258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.049 3.951 4 C 0.118 3.882 5 N -0.597 5.597 6 C 0.253 3.747 7 C -0.528 4.528 8 H 0.063 0.937 9 C 0.027 3.973 10 N -0.922 5.922 11 Si 0.942 3.058 12 H -0.263 1.263 13 H -0.293 1.293 14 H -0.269 1.269 15 C 0.529 3.471 16 O -0.566 6.566 17 C -0.096 4.096 18 H 0.089 0.911 19 C -0.114 4.114 20 C 0.531 3.469 21 O -0.601 6.601 22 N -0.692 5.692 23 C 0.148 3.852 24 H 0.068 0.932 25 C -0.124 4.124 26 C -0.112 4.112 27 C -0.116 4.116 28 C -0.112 4.112 29 C -0.073 4.073 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.101 0.899 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.264 0.736 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.405 0.595 44 H 0.089 0.911 45 H 0.083 0.917 46 H 0.059 0.941 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.053 0.947 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.744 -5.638 4.680 7.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.029 4.029 4 C -0.005 4.005 5 N -0.328 5.328 6 C 0.132 3.868 7 C -0.567 4.567 8 H 0.081 0.919 9 C -0.173 4.173 10 N -0.561 5.561 11 Si 0.768 3.232 12 H -0.188 1.188 13 H -0.220 1.220 14 H -0.193 1.193 15 C 0.317 3.683 16 O -0.446 6.446 17 C -0.117 4.117 18 H 0.107 0.893 19 C -0.154 4.154 20 C 0.319 3.681 21 O -0.483 6.483 22 N -0.343 5.343 23 C 0.043 3.957 24 H 0.086 0.914 25 C -0.162 4.162 26 C -0.149 4.149 27 C -0.154 4.154 28 C -0.149 4.149 29 C -0.092 4.092 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.119 0.881 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.073 0.927 41 H 0.125 0.875 42 H 0.109 0.891 43 H 0.243 0.757 44 H 0.107 0.893 45 H 0.101 0.899 46 H 0.077 0.923 47 H 0.102 0.898 48 H 0.089 0.911 49 H 0.083 0.917 50 H 0.072 0.928 51 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.295 -6.349 4.903 8.344 hybrid contribution 0.368 0.904 -0.599 1.145 sum 2.663 -5.445 4.305 7.435 Atomic orbital electron populations 1.22836 0.80634 1.03009 1.00413 1.88090 1.20411 1.27993 1.95410 1.23007 0.94147 0.84952 1.00777 1.21478 0.92587 0.99372 0.87065 1.48081 1.64810 1.06049 1.13834 1.19084 0.95563 0.89417 0.82692 1.21589 0.93035 1.31711 1.10321 0.91908 1.25544 1.01460 0.95297 0.95012 1.70027 1.36838 1.35184 1.14091 0.85780 0.81190 0.77671 0.78556 1.18835 1.21953 1.19303 1.20235 0.77239 0.82191 0.88624 1.90595 1.50984 1.62097 1.40935 1.21366 0.97136 0.95771 0.97454 0.89254 1.21604 0.99476 0.95290 0.99028 1.20265 0.81946 0.83540 0.82362 1.90693 1.67904 1.32391 1.57336 1.45405 1.14857 1.30770 1.43255 1.20745 0.92546 0.87482 0.94901 0.91424 1.21764 0.92768 1.00627 1.01008 1.21495 1.01752 0.97667 0.94014 1.21535 0.94294 1.01467 0.98095 1.21611 0.97702 0.97547 0.98047 1.21328 0.92256 1.00368 0.95230 0.88364 0.89614 0.92639 0.94219 0.90396 0.93896 0.90834 0.88108 0.96226 0.96360 0.92668 0.87545 0.89133 0.75747 0.89267 0.89875 0.92258 0.89842 0.91137 0.91661 0.92814 0.92707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.40 -13.79 9.28 -136.41 -1.27 -15.05 16 3 C 0.05 1.49 6.28 71.98 0.45 1.94 16 4 C 0.12 4.04 5.82 86.38 0.50 4.55 16 5 N -0.60 -23.61 2.45 -826.15 -2.03 -25.64 16 6 C 0.25 11.20 4.86 85.64 0.42 11.62 16 7 C -0.53 -24.24 8.11 25.60 0.21 -24.03 16 8 H 0.06 2.87 6.84 -2.91 -0.02 2.85 16 9 C 0.03 1.29 5.46 84.66 0.46 1.75 16 10 N -0.92 -47.55 13.29 21.45 0.28 -47.27 16 11 Si 0.94 37.61 29.54 68.60 2.03 39.63 16 12 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 13 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 14 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 15 C 0.53 20.96 5.89 87.65 0.52 21.48 16 16 O -0.57 -24.20 13.50 9.54 0.13 -24.08 16 17 C -0.10 -3.44 1.76 -11.31 -0.02 -3.46 16 18 H 0.09 3.54 5.79 -2.38 -0.01 3.53 16 19 C -0.11 -3.95 4.58 29.96 0.14 -3.81 16 20 C 0.53 17.99 6.83 87.94 0.60 18.59 16 21 O -0.60 -24.00 17.80 -3.03 -0.05 -24.06 16 22 N -0.69 -19.08 4.61 -447.32 -2.06 -21.14 16 23 C 0.15 4.02 2.92 44.91 0.13 4.16 16 24 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 25 C -0.12 -2.59 5.52 30.41 0.17 -2.42 16 26 C -0.11 -2.18 5.84 30.61 0.18 -2.00 16 27 C -0.12 -2.67 5.92 30.59 0.18 -2.49 16 28 C -0.11 -3.25 4.27 30.60 0.13 -3.12 16 29 C -0.07 -2.29 2.09 -10.65 -0.02 -2.31 16 30 H 0.10 3.45 6.07 -2.39 -0.01 3.44 16 31 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.07 2.59 7.50 -2.39 -0.02 2.58 16 37 H 0.10 3.19 8.07 -2.39 -0.02 3.17 16 38 H 0.02 0.93 8.03 -2.39 -0.02 0.91 16 39 H 0.02 0.88 6.17 -2.39 -0.01 0.87 16 40 H 0.26 13.13 8.31 -92.71 -0.77 12.36 16 41 H 0.11 3.79 6.11 -2.39 -0.01 3.78 16 42 H 0.09 3.20 8.14 -2.38 -0.02 3.19 16 43 H 0.41 9.60 8.67 -92.71 -0.80 8.80 16 44 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 46 H 0.06 1.21 7.84 -2.39 -0.02 1.19 16 47 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 48 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 49 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.05 1.80 6.84 -2.39 -0.02 1.78 16 51 H 0.05 1.65 5.40 -2.38 -0.01 1.64 16 Total: -1.00 -61.14 388.30 2.45 -58.69 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: 0.13 Total: 36.53 kcal Atomic # 6 Polarization: 17.09 SS G_CDS: 5.29 Total: 22.38 kcal Atomic # 7 Polarization: -90.24 SS G_CDS: -3.80 Total: -94.05 kcal Atomic # 8 Polarization: -62.00 SS G_CDS: -1.19 Total: -63.19 kcal Atomic # 14 Polarization: 37.61 SS G_CDS: 2.03 Total: 39.63 kcal Total: -61.14 2.45 -58.69 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597136012.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.087 kcal (2) G-P(sol) polarization free energy of solvation -61.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds