Wall clock time and date at job start Tue Mar 31 2020 21:17:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35995 * 117.00225 * 2 1 4 4 C 1.38564 * 120.07390 * 0.02562 * 3 2 1 5 5 C 1.38240 * 120.00189 * 179.70815 * 4 3 2 6 6 C 1.38254 * 120.14464 * 0.54843 * 5 4 3 7 7 C 1.50697 * 119.92806 * 179.72362 * 6 5 4 8 8 C 1.52997 * 109.47466 * 269.73015 * 7 6 5 9 9 N 1.46899 * 109.47254 * 179.97438 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.46950 * 180.02562 * 10 9 8 12 12 H 1.09004 * 109.47266 * 59.99979 * 11 10 9 13 13 O 1.42902 * 109.47467 * 300.00151 * 11 10 9 14 14 C 1.53003 * 109.47071 * 180.02562 * 11 10 9 15 15 N 1.46894 * 109.47283 * 184.99927 * 14 11 10 16 16 C 1.46902 * 110.99955 * 66.04903 * 15 14 11 17 17 C 1.46899 * 111.00197 * 190.00274 * 15 14 11 18 18 C 1.50696 * 109.47341 * 170.00280 * 17 15 14 19 19 H 1.08008 * 120.00055 * 359.97438 * 18 17 15 20 20 C 1.37876 * 120.00114 * 180.02562 * 18 17 15 21 21 N 1.31515 * 120.00161 * 180.02562 * 20 18 17 22 22 Si 1.86799 * 119.99949 * 359.97438 * 20 18 17 23 23 H 1.48509 * 109.46911 * 90.00533 * 22 20 18 24 24 H 1.48503 * 109.47249 * 210.00245 * 22 20 18 25 25 H 1.48501 * 109.47295 * 330.00291 * 22 20 18 26 26 C 1.38242 * 120.14529 * 359.45179 * 6 5 4 27 27 C 1.38569 * 119.99931 * 0.27536 * 26 6 5 28 28 O 1.35990 * 120.07102 * 179.97438 * 27 26 6 29 29 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47107 * 300.00192 * 1 2 3 31 31 H 1.08999 * 109.46958 * 60.00093 * 1 2 3 32 32 H 1.08004 * 120.00095 * 0.02562 * 4 3 2 33 33 H 1.07999 * 119.92939 * 180.29674 * 5 4 3 34 34 H 1.09002 * 109.47120 * 149.72768 * 7 6 5 35 35 H 1.08998 * 109.46862 * 29.73570 * 7 6 5 36 36 H 1.09002 * 109.47153 * 59.99773 * 8 7 6 37 37 H 1.09001 * 109.46832 * 299.99964 * 8 7 6 38 38 H 1.00908 * 110.99847 * 56.04959 * 9 8 7 39 39 H 1.08995 * 109.47167 * 300.00240 * 10 9 8 40 40 H 1.09003 * 109.46442 * 60.00214 * 10 9 8 41 41 H 0.96695 * 113.99730 * 300.00658 * 13 11 10 42 42 H 1.08998 * 109.46988 * 305.00703 * 14 11 10 43 43 H 1.09010 * 109.46810 * 65.00444 * 14 11 10 44 44 H 1.08997 * 109.46962 * 59.99783 * 16 15 14 45 45 H 1.09003 * 109.47103 * 179.97438 * 16 15 14 46 46 H 1.09003 * 109.46735 * 299.99855 * 16 15 14 47 47 H 1.09003 * 109.47141 * 289.99959 * 17 15 14 48 48 H 1.09000 * 109.47139 * 49.99733 * 17 15 14 49 49 H 0.97004 * 120.00209 * 180.02562 * 21 20 18 50 50 H 1.08003 * 120.00010 * 180.24830 * 26 6 5 51 51 H 0.96701 * 114.00339 * 90.00085 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0066 6 6 3.3030 3.6798 0.0008 7 6 3.9838 5.0242 0.0012 8 6 4.2140 5.4799 -1.4412 9 7 4.8770 6.7907 -1.4407 10 6 5.1152 7.2607 -2.8120 11 6 5.8061 8.6251 -2.7707 12 1 6.7578 8.5348 -2.2472 13 8 4.9720 9.5609 -2.0845 14 6 6.0535 9.1149 -4.1989 15 7 6.8223 10.3661 -4.1612 16 6 8.1732 10.1381 -3.6311 17 6 6.8766 10.9908 -5.4897 18 6 7.4534 12.3778 -5.3693 19 1 7.7496 12.7575 -4.4025 20 6 7.6020 13.1626 -6.4931 21 7 8.1058 14.3729 -6.3881 22 14 7.0891 12.5063 -8.1651 23 1 5.6665 12.8503 -8.4168 24 1 7.9397 13.1162 -9.2185 25 1 7.2533 11.0305 -8.1892 26 6 4.0604 2.5233 0.0002 27 6 3.4360 1.2862 -0.0002 28 8 4.1795 0.1476 -0.0013 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.2147 2.3197 0.0014 33 1 1.3343 4.5115 0.0119 34 1 4.9420 4.9461 0.5148 35 1 3.3541 5.7502 0.5155 36 1 3.2558 5.5579 -1.9548 37 1 4.8438 4.7538 -1.9554 38 1 5.7376 6.7604 -0.9146 39 1 5.7517 6.5472 -3.3353 40 1 4.1633 7.3506 -3.3356 41 1 4.1066 9.6915 -2.4956 42 1 6.6146 8.3601 -4.7498 43 1 5.0980 9.2904 -4.6935 44 1 8.6974 9.4247 -4.2669 45 1 8.7208 11.0804 -3.6145 46 1 8.1038 9.7399 -2.6187 47 1 7.5061 10.3915 -6.1476 48 1 5.8705 11.0504 -5.9046 49 1 8.2100 14.9252 -7.1788 50 1 5.1387 2.5839 -0.0003 51 1 4.3950 -0.1823 0.8818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601972704.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:54 Heat of formation + Delta-G solvation = -97.563327 kcal Electronic energy + Delta-G solvation = -28118.129789 eV Core-core repulsion = 24018.248346 eV Total energy + Delta-G solvation = -4099.881443 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.87679 -38.59907 -38.26983 -37.44252 -36.18192 -35.15290 -32.56755 -32.39844 -30.57000 -30.00085 -28.64454 -27.73588 -27.07926 -25.60506 -23.60816 -23.09564 -22.62290 -21.53641 -20.98493 -20.10321 -18.91943 -17.99069 -17.10300 -16.93259 -16.52790 -16.31766 -15.84065 -15.51543 -15.33842 -15.08698 -15.00379 -14.64929 -14.46718 -14.29094 -14.15743 -13.86445 -13.77786 -13.15740 -13.00328 -12.75305 -12.60104 -12.46629 -12.27663 -12.12019 -11.94105 -11.75952 -11.61780 -11.30730 -11.25776 -11.17226 -10.97981 -10.97148 -10.77456 -10.52258 -10.27945 -10.00642 -9.51642 -9.30672 -9.21153 -8.57642 -8.55923 -8.46578 -7.32225 -6.03742 -4.00867 0.75818 0.87298 2.74637 3.11707 3.28061 3.35479 3.36850 3.69372 3.87441 4.30521 4.42308 4.43782 4.53895 4.63825 4.67099 4.74811 4.78973 4.81718 4.89681 4.96579 4.98243 5.09683 5.12801 5.22848 5.29077 5.32336 5.37626 5.48269 5.55048 5.60753 5.64813 5.73168 5.76931 5.80164 5.94453 6.10592 6.17652 6.21915 6.22961 6.32197 6.68680 6.73076 6.78662 6.86341 6.99460 7.17867 7.30727 7.59497 7.90663 8.00790 8.14602 8.67609 9.05963 9.57824 11.09446 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.025473 B = 0.001470 C = 0.001454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.938815 B =19047.142988 C =19248.208189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.310 6.310 3 C 0.097 3.903 4 C -0.193 4.193 5 C -0.081 4.081 6 C -0.099 4.099 7 C -0.075 4.075 8 C 0.064 3.936 9 N -0.679 5.679 10 C 0.026 3.974 11 C 0.117 3.883 12 H 0.094 0.906 13 O -0.534 6.534 14 C 0.021 3.979 15 N -0.520 5.520 16 C 0.035 3.965 17 C 0.162 3.838 18 C -0.508 4.508 19 H 0.082 0.918 20 C 0.068 3.932 21 N -0.900 5.900 22 Si 0.875 3.125 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.269 1.269 26 C -0.103 4.103 27 C 0.075 3.925 28 O -0.487 6.487 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.028 0.972 38 H 0.341 0.659 39 H 0.035 0.965 40 H 0.075 0.925 41 H 0.368 0.632 42 H 0.027 0.973 43 H 0.070 0.930 44 H 0.008 0.992 45 H 0.081 0.919 46 H 0.050 0.950 47 H -0.014 1.014 48 H 0.022 0.978 49 H 0.263 0.737 50 H 0.135 0.865 51 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.358 -30.172 15.663 36.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.223 6.223 3 C 0.051 3.949 4 C -0.211 4.211 5 C -0.099 4.099 6 C -0.100 4.100 7 C -0.112 4.112 8 C -0.066 4.066 9 N -0.309 5.309 10 C -0.104 4.104 11 C 0.056 3.944 12 H 0.112 0.888 13 O -0.338 6.338 14 C -0.108 4.108 15 N -0.243 5.243 16 C -0.113 4.113 17 C 0.035 3.965 18 C -0.546 4.546 19 H 0.100 0.900 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.702 3.298 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.194 1.194 26 C -0.122 4.122 27 C 0.030 3.970 28 O -0.296 6.296 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.150 0.850 33 H 0.149 0.851 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.159 0.841 39 H 0.053 0.947 40 H 0.093 0.907 41 H 0.214 0.786 42 H 0.045 0.955 43 H 0.089 0.911 44 H 0.027 0.973 45 H 0.099 0.901 46 H 0.068 0.932 47 H 0.004 0.996 48 H 0.040 0.960 49 H 0.073 0.927 50 H 0.153 0.847 51 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -14.568 -29.433 15.708 36.404 hybrid contribution 0.177 -1.495 -1.847 2.383 sum -14.391 -30.928 13.861 36.821 Atomic orbital electron populations 1.23099 0.78387 1.04106 1.01414 1.86145 1.21284 1.26272 1.88630 1.19484 0.91788 0.84960 0.98696 1.21178 1.00173 0.91861 1.07929 1.20934 0.93988 0.97232 0.97787 1.19665 0.93407 0.94851 1.02044 1.20515 1.00913 0.92612 0.97192 1.21949 0.99430 0.89302 0.95879 1.60359 1.30176 1.26443 1.13972 1.22722 1.00721 0.97221 0.89696 1.21863 0.93914 0.85910 0.92674 0.88840 1.86607 1.29850 1.63226 1.54082 1.22790 0.99384 0.92642 0.96020 1.61846 1.14335 1.20894 1.27236 1.22295 0.90125 1.01474 0.97449 1.20197 0.95969 0.95456 0.84834 1.21045 1.40756 0.96701 0.96109 0.90029 1.24900 0.94987 0.94737 0.98726 1.69896 1.45564 1.08834 1.29646 0.86872 0.78910 0.79457 0.84538 1.20158 1.21195 1.19427 1.21186 1.00552 0.90401 1.00036 1.17725 0.86148 0.86599 1.06553 1.84904 1.71762 1.39677 1.33274 0.88111 0.92601 0.92531 0.84974 0.85147 0.90941 0.89676 0.90958 0.95358 0.84080 0.94689 0.90704 0.78571 0.95478 0.91116 0.97330 0.90056 0.93169 0.99609 0.95973 0.92684 0.84709 0.75905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.65 10.28 -34.23 -0.35 -3.01 16 3 C 0.10 0.85 6.70 -39.12 -0.26 0.59 16 4 C -0.19 -1.40 9.04 -39.46 -0.36 -1.76 16 5 C -0.08 -0.59 9.69 -39.57 -0.38 -0.97 16 6 C -0.10 -0.75 5.13 -104.62 -0.54 -1.29 16 7 C -0.07 -0.53 5.60 -27.89 -0.16 -0.69 16 8 C 0.06 0.54 5.67 -3.83 -0.02 0.52 16 9 N -0.68 -6.72 6.37 -113.78 -0.72 -7.45 16 10 C 0.03 0.29 5.35 -3.82 -0.02 0.27 16 11 C 0.12 1.60 3.13 -26.73 -0.08 1.51 16 12 H 0.09 1.32 6.34 -51.93 -0.33 1.00 16 13 O -0.53 -8.22 13.15 -35.23 -0.46 -8.68 16 14 C 0.02 0.35 4.59 -3.83 -0.02 0.33 16 15 N -0.52 -10.94 4.70 -244.37 -1.15 -12.09 16 16 C 0.03 0.68 9.15 60.07 0.55 1.23 16 17 C 0.16 3.97 3.79 -4.98 -0.02 3.95 16 18 C -0.51 -14.63 9.01 -34.44 -0.31 -14.94 16 19 H 0.08 2.57 7.37 -52.48 -0.39 2.18 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 21 N -0.90 -27.80 13.96 55.43 0.77 -27.03 16 22 Si 0.87 21.61 27.47 -169.99 -4.67 16.94 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.27 -6.43 6.54 56.52 0.37 -6.06 16 26 C -0.10 -0.83 9.63 -39.46 -0.38 -1.21 16 27 C 0.08 0.68 6.72 -39.12 -0.26 0.41 16 28 O -0.49 -4.19 13.29 -34.21 -0.45 -4.64 16 29 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.18 7.66 -51.93 -0.40 -0.21 16 31 H 0.06 0.22 7.66 -51.93 -0.40 -0.18 16 32 H 0.13 0.67 6.30 -52.48 -0.33 0.34 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.34 3.20 8.73 -39.29 -0.34 2.86 16 39 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.37 4.68 9.04 45.56 0.41 5.09 16 42 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 43 H 0.07 1.12 7.93 -51.92 -0.41 0.70 16 44 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 45 H 0.08 1.78 6.76 -51.93 -0.35 1.43 16 46 H 0.05 0.85 6.37 -51.93 -0.33 0.52 16 47 H -0.01 -0.34 7.18 -51.93 -0.37 -0.71 16 48 H 0.02 0.54 7.36 -51.93 -0.38 0.16 16 49 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 50 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 51 H 0.39 1.52 9.06 45.56 0.41 1.94 16 LS Contribution 413.79 15.07 6.24 6.24 Total: -1.00 -35.14 413.79 -9.19 -44.33 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -7.02 Total: 4.45 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -1.37 Total: -9.06 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -1.10 Total: -46.57 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -1.27 Total: -16.33 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -35.14 -9.19 -44.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601972704.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.236 kcal (2) G-P(sol) polarization free energy of solvation -35.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds