Wall clock time and date at job start Tue Mar 31 2020 22:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00338 * 2 1 4 4 O 1.20820 * 120.00311 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99843 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47340 * 59.99871 * 5 3 2 7 7 C 1.53003 * 109.47057 * 299.99698 * 5 3 2 8 8 C 1.53002 * 109.46935 * 180.02562 * 7 5 3 9 9 C 1.53006 * 109.46926 * 60.00213 * 8 7 5 10 10 C 1.52995 * 109.47031 * 299.99868 * 9 8 7 11 11 H 1.09006 * 109.47103 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46959 * 299.99830 * 10 9 8 13 13 O 1.21285 * 119.99730 * 115.10977 * 12 10 9 14 14 N 1.34776 * 120.00597 * 295.11099 * 12 10 9 15 15 C 1.47077 * 120.87766 * 354.31218 * 14 12 10 16 16 C 1.53236 * 108.52178 * 231.16351 * 15 14 12 17 17 N 1.46900 * 109.33665 * 306.16736 * 16 15 14 18 18 C 1.46900 * 110.99776 * 187.25352 * 17 16 15 19 19 C 1.50700 * 109.47215 * 309.87283 * 18 17 16 20 20 H 1.07998 * 120.00349 * 4.82573 * 19 18 17 21 21 C 1.37877 * 119.99911 * 184.82621 * 19 18 17 22 22 N 1.31513 * 120.00529 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99870 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47465 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47037 * 120.00091 * 23 21 19 26 26 H 1.48500 * 109.47368 * 239.99787 * 23 21 19 27 27 C 1.46901 * 111.26674 * 63.10734 * 17 16 15 28 28 C 1.47081 * 120.88390 * 174.28713 * 14 12 10 29 29 C 1.52991 * 109.47429 * 60.00018 * 10 9 8 30 30 H 1.09002 * 109.47127 * 300.01006 * 1 2 3 31 31 H 1.09003 * 109.46649 * 59.99716 * 1 2 3 32 32 H 1.08994 * 109.47792 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46842 * 299.99982 * 7 5 3 34 34 H 1.09001 * 109.46865 * 60.00187 * 7 5 3 35 35 H 1.09004 * 109.47006 * 179.97438 * 8 7 5 36 36 H 1.08991 * 109.47025 * 299.99949 * 8 7 5 37 37 H 1.09001 * 109.46808 * 179.97438 * 9 8 7 38 38 H 1.08996 * 109.47078 * 60.00191 * 9 8 7 39 39 H 1.09007 * 109.63161 * 350.87287 * 15 14 12 40 40 H 1.08997 * 109.63208 * 111.44866 * 15 14 12 41 41 H 1.09003 * 109.49434 * 66.12828 * 16 15 14 42 42 H 1.08999 * 109.49626 * 186.20929 * 16 15 14 43 43 H 1.08997 * 109.47543 * 69.87253 * 18 17 16 44 44 H 1.09006 * 109.47046 * 189.87625 * 18 17 16 45 45 H 0.96999 * 120.00731 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.49165 * 176.93036 * 27 17 16 47 47 H 1.09004 * 109.51703 * 56.86971 * 27 17 16 48 48 H 1.08993 * 109.62676 * 248.54648 * 28 14 12 49 49 H 1.08993 * 109.62661 * 9.12956 * 28 14 12 50 50 H 1.09003 * 109.47031 * 59.99929 * 29 10 9 51 51 H 1.09008 * 109.47601 * 179.97438 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2746 0.0006 6 1 3.9565 0.7803 -0.8891 7 6 4.1129 0.5813 1.2502 8 6 5.6408 0.6619 1.2511 9 6 6.0741 2.1293 1.2513 10 6 5.5276 2.8225 0.0017 11 1 5.8367 3.8678 0.0016 12 6 6.0675 2.1395 -1.2284 13 8 5.3128 1.5610 -1.9812 14 7 7.3889 2.1713 -1.4919 15 6 8.3049 2.9693 -0.6628 16 6 9.1521 3.8522 -1.5851 17 7 9.8039 3.0122 -2.5987 18 6 10.7590 3.7940 -3.3954 19 6 10.0888 5.0482 -3.8943 20 1 9.0824 5.2839 -3.5812 21 6 10.7604 5.8948 -4.7505 22 7 11.9857 5.6077 -5.1323 23 14 9.9294 7.4491 -5.3695 24 1 8.5623 7.5411 -4.7970 25 1 10.7213 8.6338 -4.9517 26 1 9.8442 7.4083 -6.8515 27 6 8.8142 2.3531 -3.4612 28 6 7.9531 1.4087 -2.6158 29 6 3.9998 2.7420 0.0007 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.7228 1.0757 2.1399 34 1 3.8037 -0.4639 1.2503 35 1 6.0301 0.1683 2.1417 36 1 6.0311 0.1678 0.3615 37 1 7.1626 2.1866 1.2524 38 1 5.6838 2.6233 2.1410 39 1 7.7298 3.5969 0.0182 40 1 8.9549 2.3056 -0.0926 41 1 8.5116 4.5845 -2.0767 42 1 9.9113 4.3687 -0.9977 43 1 11.6154 4.0614 -2.7764 44 1 11.0959 3.1996 -4.2447 45 1 12.4581 6.2031 -5.7349 46 1 9.3284 1.7823 -4.2345 47 1 8.1784 3.1060 -3.9272 48 1 8.5694 0.5950 -2.2334 49 1 7.1456 1.0045 -3.2261 50 1 3.6094 3.2361 0.8905 51 1 3.6104 3.2363 -0.8893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602209482.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:53 Heat of formation + Delta-G solvation = -122.838895 kcal Electronic energy + Delta-G solvation = -31101.926470 eV Core-core repulsion = 27000.948996 eV Total energy + Delta-G solvation = -4100.977474 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.21398 -40.23964 -38.20572 -36.96505 -36.44568 -34.59527 -32.54867 -31.86101 -31.14073 -30.47989 -28.22617 -27.87833 -25.55294 -24.20901 -23.84213 -23.02678 -22.25435 -21.39263 -20.63588 -19.89306 -18.42862 -17.67322 -17.15146 -16.67016 -16.51024 -16.34250 -15.64412 -15.40026 -15.03688 -14.85884 -14.45735 -14.33680 -14.05889 -13.91705 -13.67402 -13.57662 -13.26321 -12.96500 -12.83214 -12.70813 -12.42897 -12.20873 -12.13323 -12.06626 -11.83383 -11.35487 -11.20618 -11.16627 -11.09980 -11.00635 -10.98785 -10.89717 -10.74614 -10.56263 -10.40811 -10.30142 -10.25661 -9.92544 -9.64455 -9.33461 -8.51772 -8.42922 -7.29655 -6.10351 -4.19815 2.10168 2.56381 2.71874 3.13824 3.21996 3.30820 3.33977 4.32727 4.34839 4.38026 4.44865 4.68526 4.82427 4.85882 4.88436 4.91946 4.94162 4.96738 5.10690 5.19703 5.22153 5.26129 5.33152 5.38772 5.44075 5.49370 5.56330 5.64526 5.68441 5.75386 5.80720 5.83977 5.92311 5.94473 5.98465 6.05607 6.09013 6.15224 6.26304 6.38626 6.56057 6.66253 6.72782 7.15753 7.44879 7.57473 7.62223 7.82126 7.91316 8.11836 8.22461 8.29456 8.90272 9.48102 10.94967 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.002625 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.938529 B =10665.038736 C =11255.644969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.512 6.512 5 C -0.095 4.095 6 H 0.144 0.856 7 C -0.108 4.108 8 C -0.119 4.119 9 C -0.117 4.117 10 C -0.109 4.109 11 H 0.103 0.897 12 C 0.521 3.479 13 O -0.549 6.549 14 N -0.602 5.602 15 C 0.107 3.893 16 C 0.048 3.952 17 N -0.540 5.540 18 C 0.187 3.813 19 C -0.553 4.553 20 H 0.059 0.941 21 C 0.066 3.934 22 N -0.889 5.889 23 Si 0.888 3.112 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.049 3.951 28 C 0.115 3.885 29 C -0.080 4.080 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.080 0.920 43 H 0.031 0.969 44 H 0.034 0.966 45 H 0.262 0.738 46 H 0.077 0.923 47 H 0.040 0.960 48 H 0.068 0.932 49 H 0.087 0.913 50 H 0.076 0.924 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.311 -11.267 15.277 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.276 6.276 3 C 0.312 3.688 4 O -0.400 6.400 5 C -0.113 4.113 6 H 0.161 0.839 7 C -0.145 4.145 8 C -0.156 4.156 9 C -0.155 4.155 10 C -0.130 4.130 11 H 0.121 0.879 12 C 0.310 3.690 13 O -0.428 6.428 14 N -0.335 5.335 15 C -0.016 4.016 16 C -0.082 4.082 17 N -0.264 5.264 18 C 0.062 3.938 19 C -0.592 4.592 20 H 0.077 0.923 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.716 3.284 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.081 4.081 28 C -0.007 4.007 29 C -0.117 4.117 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.118 0.882 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.098 0.902 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.072 0.928 46 H 0.095 0.905 47 H 0.058 0.942 48 H 0.087 0.913 49 H 0.105 0.895 50 H 0.094 0.906 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.504 -11.584 15.009 24.492 hybrid contribution -0.940 1.843 -0.997 2.297 sum -16.445 -9.741 14.012 23.699 Atomic orbital electron populations 1.23239 0.76785 1.03512 1.02431 1.86523 1.23088 1.33818 1.84146 1.24015 0.92235 0.81060 0.71489 1.90641 1.67366 1.36402 1.45597 1.21530 0.86172 0.99836 1.03794 0.83909 1.21510 0.96159 1.00926 0.95924 1.21541 0.94859 0.96495 1.02740 1.21687 1.01590 0.95828 0.96356 1.21377 0.96404 1.01370 0.93883 0.87909 1.20509 0.81726 0.80248 0.86536 1.90544 1.56434 1.45974 1.49851 1.48168 1.06487 1.47555 1.31243 1.22122 0.91912 0.94160 0.93438 1.22284 0.97235 0.94320 0.94340 1.62501 1.16020 1.32107 1.15776 1.19774 0.90633 0.91112 0.92321 1.21801 1.01012 1.07624 1.28727 0.92326 1.24963 0.94784 0.98047 0.95926 1.69945 1.11093 1.37547 1.34182 0.86598 0.79643 0.83389 0.78759 1.19874 1.20862 1.20911 1.22262 0.94096 0.96847 0.94866 1.21818 0.96969 0.94089 0.87860 1.21183 0.92773 0.94088 1.03699 0.92082 0.91970 0.88223 0.91664 0.90673 0.90994 0.91418 0.90353 0.90560 0.90088 0.90948 0.93575 0.90176 0.95105 0.94824 0.92789 0.90484 0.94184 0.91329 0.89490 0.90575 0.90457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.34 16 2 O -0.36 -4.01 10.47 -39.24 -0.41 -4.42 16 3 C 0.47 5.91 7.25 36.01 0.26 6.17 16 4 O -0.51 -7.63 15.73 -18.75 -0.29 -7.93 16 5 C -0.09 -1.09 2.34 -91.77 -0.21 -1.30 16 6 H 0.14 1.92 5.34 -51.93 -0.28 1.65 16 7 C -0.11 -0.95 5.14 -26.73 -0.14 -1.09 16 8 C -0.12 -1.00 5.70 -26.73 -0.15 -1.16 16 9 C -0.12 -0.97 5.12 -26.73 -0.14 -1.10 16 10 C -0.11 -1.16 2.17 -91.78 -0.20 -1.36 16 11 H 0.10 1.01 7.16 -51.93 -0.37 0.64 16 12 C 0.52 7.26 5.56 -10.98 -0.06 7.20 16 13 O -0.55 -9.10 12.95 5.55 0.07 -9.03 16 14 N -0.60 -8.53 3.01 -172.47 -0.52 -9.05 16 15 C 0.11 1.37 5.02 -3.61 -0.02 1.36 16 16 C 0.05 0.82 4.98 -3.70 -0.02 0.81 16 17 N -0.54 -10.66 4.83 -235.76 -1.14 -11.80 16 18 C 0.19 4.57 5.21 -4.98 -0.03 4.54 16 19 C -0.55 -14.63 7.93 -34.44 -0.27 -14.91 16 20 H 0.06 1.55 5.86 -52.49 -0.31 1.25 16 21 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 22 N -0.89 -25.54 13.29 55.43 0.74 -24.80 16 23 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.05 0.90 5.37 -3.70 -0.02 0.88 16 28 C 0.12 1.75 6.61 -3.60 -0.02 1.73 16 29 C -0.08 -0.91 3.69 -26.73 -0.10 -1.01 16 30 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 31 H 0.06 0.52 8.13 -51.93 -0.42 0.09 16 32 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.69 7.22 -51.93 -0.37 0.32 16 37 H 0.08 0.62 5.83 -51.93 -0.30 0.32 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.84 5.20 -51.92 -0.27 0.57 16 40 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 41 H 0.05 0.91 6.21 -51.93 -0.32 0.59 16 42 H 0.08 1.38 8.11 -51.93 -0.42 0.95 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.89 7.89 -51.93 -0.41 0.48 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.08 1.40 7.94 -51.93 -0.41 0.99 16 47 H 0.04 0.84 7.75 -51.93 -0.40 0.44 16 48 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 49 H 0.09 1.35 7.04 -51.93 -0.37 0.98 16 50 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 51 H 0.08 1.04 8.10 -51.92 -0.42 0.62 16 LS Contribution 386.59 15.07 5.83 5.83 Total: -1.00 -31.60 386.59 -9.33 -40.93 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -8.44 Total: 0.36 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -0.15 Total: 3.79 kcal Atomic # 7 Polarization: -44.73 SS G_CDS: -0.92 Total: -45.65 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.63 Total: -21.38 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.60 -9.33 -40.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209482.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.905 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds