Wall clock time and date at job start Tue Mar 31 2020 22:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34224 * 117.00338 * 2 1 4 4 O 1.20820 * 120.00311 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99843 * 179.97438 * 3 2 1 6 6 H 1.09003 * 109.47340 * 59.99871 * 5 3 2 7 7 C 1.53003 * 109.47057 * 299.99698 * 5 3 2 8 8 C 1.53002 * 109.46935 * 180.02562 * 7 5 3 9 9 C 1.53006 * 109.46926 * 60.00213 * 8 7 5 10 10 C 1.52995 * 109.47031 * 299.99868 * 9 8 7 11 11 H 1.09006 * 109.47103 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46959 * 299.99830 * 10 9 8 13 13 O 1.21285 * 119.99730 * 115.10977 * 12 10 9 14 14 N 1.34776 * 120.00597 * 295.11099 * 12 10 9 15 15 C 1.47077 * 120.87766 * 354.31218 * 14 12 10 16 16 C 1.53236 * 108.52178 * 231.16351 * 15 14 12 17 17 N 1.46900 * 109.33665 * 306.16736 * 16 15 14 18 18 C 1.46900 * 110.99776 * 187.25352 * 17 16 15 19 19 C 1.50700 * 109.47215 * 309.87283 * 18 17 16 20 20 H 1.07998 * 120.00349 * 4.82573 * 19 18 17 21 21 C 1.37877 * 119.99911 * 184.82621 * 19 18 17 22 22 N 1.31513 * 120.00529 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99870 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47465 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47037 * 120.00091 * 23 21 19 26 26 H 1.48500 * 109.47368 * 239.99787 * 23 21 19 27 27 C 1.46901 * 111.26674 * 63.10734 * 17 16 15 28 28 C 1.47081 * 120.88390 * 174.28713 * 14 12 10 29 29 C 1.52991 * 109.47429 * 60.00018 * 10 9 8 30 30 H 1.09002 * 109.47127 * 300.01006 * 1 2 3 31 31 H 1.09003 * 109.46649 * 59.99716 * 1 2 3 32 32 H 1.08994 * 109.47792 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46842 * 299.99982 * 7 5 3 34 34 H 1.09001 * 109.46865 * 60.00187 * 7 5 3 35 35 H 1.09004 * 109.47006 * 179.97438 * 8 7 5 36 36 H 1.08991 * 109.47025 * 299.99949 * 8 7 5 37 37 H 1.09001 * 109.46808 * 179.97438 * 9 8 7 38 38 H 1.08996 * 109.47078 * 60.00191 * 9 8 7 39 39 H 1.09007 * 109.63161 * 350.87287 * 15 14 12 40 40 H 1.08997 * 109.63208 * 111.44866 * 15 14 12 41 41 H 1.09003 * 109.49434 * 66.12828 * 16 15 14 42 42 H 1.08999 * 109.49626 * 186.20929 * 16 15 14 43 43 H 1.08997 * 109.47543 * 69.87253 * 18 17 16 44 44 H 1.09006 * 109.47046 * 189.87625 * 18 17 16 45 45 H 0.96999 * 120.00731 * 179.97438 * 22 21 19 46 46 H 1.09000 * 109.49165 * 176.93036 * 27 17 16 47 47 H 1.09004 * 109.51703 * 56.86971 * 27 17 16 48 48 H 1.08993 * 109.62676 * 248.54648 * 28 14 12 49 49 H 1.08993 * 109.62661 * 9.12956 * 28 14 12 50 50 H 1.09003 * 109.47031 * 59.99929 * 29 10 9 51 51 H 1.09008 * 109.47601 * 179.97438 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4035 2.2093 -0.0005 5 6 3.5664 1.2746 0.0006 6 1 3.9565 0.7803 -0.8891 7 6 4.1129 0.5813 1.2502 8 6 5.6408 0.6619 1.2511 9 6 6.0741 2.1293 1.2513 10 6 5.5276 2.8225 0.0017 11 1 5.8367 3.8678 0.0016 12 6 6.0675 2.1395 -1.2284 13 8 5.3128 1.5610 -1.9812 14 7 7.3889 2.1713 -1.4919 15 6 8.3049 2.9693 -0.6628 16 6 9.1521 3.8522 -1.5851 17 7 9.8039 3.0122 -2.5987 18 6 10.7590 3.7940 -3.3954 19 6 10.0888 5.0482 -3.8943 20 1 9.0824 5.2839 -3.5812 21 6 10.7604 5.8948 -4.7505 22 7 11.9857 5.6077 -5.1323 23 14 9.9294 7.4491 -5.3695 24 1 8.5623 7.5411 -4.7970 25 1 10.7213 8.6338 -4.9517 26 1 9.8442 7.4083 -6.8515 27 6 8.8142 2.3531 -3.4612 28 6 7.9531 1.4087 -2.6158 29 6 3.9998 2.7420 0.0007 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 3.7228 1.0757 2.1399 34 1 3.8037 -0.4639 1.2503 35 1 6.0301 0.1683 2.1417 36 1 6.0311 0.1678 0.3615 37 1 7.1626 2.1866 1.2524 38 1 5.6838 2.6233 2.1410 39 1 7.7298 3.5969 0.0182 40 1 8.9549 2.3056 -0.0926 41 1 8.5116 4.5845 -2.0767 42 1 9.9113 4.3687 -0.9977 43 1 11.6154 4.0614 -2.7764 44 1 11.0959 3.1996 -4.2447 45 1 12.4581 6.2031 -5.7349 46 1 9.3284 1.7823 -4.2345 47 1 8.1784 3.1060 -3.9272 48 1 8.5694 0.5950 -2.2334 49 1 7.1456 1.0045 -3.2261 50 1 3.6094 3.2361 0.8905 51 1 3.6104 3.2363 -0.8893 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602209482.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:52 Heat of formation + Delta-G solvation = -142.818748 kcal Electronic energy + Delta-G solvation = -31102.792862 eV Core-core repulsion = 27000.948996 eV Total energy + Delta-G solvation = -4101.843866 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.17690 -41.27215 -39.46771 -38.03617 -37.39520 -36.07964 -34.38951 -32.95984 -31.96617 -31.63725 -29.82785 -28.63374 -27.25494 -25.08137 -25.03087 -24.37176 -23.57533 -22.41850 -21.65786 -21.09126 -19.66664 -18.61934 -18.37062 -18.06679 -17.66080 -17.40227 -16.76711 -16.69086 -16.37427 -15.97585 -15.95574 -15.49223 -15.31388 -14.99210 -14.83920 -14.74135 -14.38015 -14.09679 -13.89190 -13.69236 -13.49272 -13.40596 -13.17953 -13.08407 -12.97082 -12.92441 -12.82120 -12.52431 -12.47709 -12.20674 -12.12309 -12.01587 -11.83920 -11.81293 -11.75294 -11.66597 -11.51773 -11.15878 -11.09520 -10.63549 -10.42592 -9.67965 -9.02942 -8.18659 -6.37501 1.13656 1.32357 1.35151 1.45198 1.63853 1.76079 2.02898 2.34017 3.06958 3.31314 3.45211 3.52696 3.68489 3.87786 3.99970 4.09065 4.14126 4.17837 4.23738 4.27723 4.29068 4.35680 4.37224 4.39124 4.49558 4.55486 4.58892 4.66669 4.69303 4.73409 4.80739 4.91601 4.98929 5.01885 5.05835 5.12772 5.17169 5.19504 5.24128 5.25182 5.30311 5.34591 5.38029 5.45336 5.54964 5.72888 5.99369 6.17033 6.47468 6.51073 6.69021 6.83718 7.19697 7.34391 8.83881 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018576 B = 0.002625 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.938529 B =10665.038736 C =11255.644969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.468 3.532 4 O -0.542 6.542 5 C -0.094 4.094 6 H 0.122 0.878 7 C -0.102 4.102 8 C -0.117 4.117 9 C -0.113 4.113 10 C -0.104 4.104 11 H 0.117 0.883 12 C 0.518 3.482 13 O -0.580 6.580 14 N -0.607 5.607 15 C 0.118 3.882 16 C 0.045 3.955 17 N -0.533 5.533 18 C 0.199 3.801 19 C -0.557 4.557 20 H 0.055 0.945 21 C 0.014 3.986 22 N -0.923 5.923 23 Si 0.952 3.048 24 H -0.271 1.271 25 H -0.274 1.274 26 H -0.282 1.282 27 C 0.053 3.947 28 C 0.127 3.873 29 C -0.077 4.077 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.132 0.868 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.116 0.884 40 H 0.096 0.904 41 H 0.019 0.981 42 H 0.082 0.918 43 H 0.012 0.988 44 H 0.006 0.994 45 H 0.265 0.735 46 H 0.072 0.928 47 H 0.008 0.992 48 H 0.088 0.912 49 H 0.082 0.918 50 H 0.091 0.909 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.241 -11.532 17.993 26.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.280 6.280 3 C 0.313 3.687 4 O -0.432 6.432 5 C -0.112 4.112 6 H 0.139 0.861 7 C -0.139 4.139 8 C -0.154 4.154 9 C -0.150 4.150 10 C -0.124 4.124 11 H 0.135 0.865 12 C 0.308 3.692 13 O -0.461 6.461 14 N -0.339 5.339 15 C -0.004 4.004 16 C -0.084 4.084 17 N -0.257 5.257 18 C 0.073 3.927 19 C -0.596 4.596 20 H 0.074 0.926 21 C -0.186 4.186 22 N -0.563 5.563 23 Si 0.778 3.222 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.207 1.207 27 C -0.076 4.076 28 C 0.004 3.996 29 C -0.115 4.115 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.150 0.850 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.120 0.880 39 H 0.134 0.866 40 H 0.114 0.886 41 H 0.037 0.963 42 H 0.100 0.900 43 H 0.030 0.970 44 H 0.024 0.976 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.026 0.974 48 H 0.106 0.894 49 H 0.100 0.900 50 H 0.109 0.891 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.444 -11.866 17.749 26.948 hybrid contribution -0.721 1.859 -1.883 2.742 sum -17.165 -10.007 15.866 25.426 Atomic orbital electron populations 1.23539 0.75096 1.05673 1.02368 1.86514 1.24822 1.33035 1.83647 1.24294 0.92753 0.81019 0.70653 1.90621 1.68075 1.37329 1.47148 1.21510 0.85474 0.99949 1.04310 0.86109 1.21515 0.96617 1.00941 0.94859 1.21542 0.94195 0.96774 1.02877 1.21752 1.02222 0.95458 0.95610 1.21442 0.95628 1.01981 0.93397 0.86545 1.21155 0.81149 0.79686 0.87178 1.90547 1.57087 1.47282 1.51167 1.48253 1.06975 1.47608 1.31017 1.22177 0.91741 0.94144 0.92383 1.22382 0.97297 0.94583 0.94110 1.62443 1.16235 1.31597 1.15438 1.19441 0.91167 0.90612 0.91516 1.22046 1.00820 1.08253 1.28455 0.92644 1.25756 0.95370 1.01152 0.96304 1.70050 1.12405 1.38845 1.34999 0.85594 0.78689 0.79870 0.78034 1.19591 1.19964 1.20747 1.22236 0.93555 0.96472 0.95339 1.21607 0.96368 0.93624 0.88027 1.21152 0.93426 0.94004 1.02945 0.91606 0.92629 0.85002 0.90158 0.90325 0.88627 0.93455 0.89227 0.87985 0.86645 0.88623 0.96314 0.89973 0.96988 0.97590 0.92589 0.90986 0.97395 0.89404 0.89983 0.89084 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.82 10.47 -51.36 -0.54 -8.36 16 3 C 0.47 11.61 7.25 71.24 0.52 12.12 16 4 O -0.54 -16.11 15.73 21.98 0.35 -15.77 16 5 C -0.09 -2.06 2.34 -11.54 -0.03 -2.09 16 6 H 0.12 3.28 5.34 -2.39 -0.01 3.27 16 7 C -0.10 -1.54 5.14 30.60 0.16 -1.39 16 8 C -0.12 -1.57 5.70 30.60 0.17 -1.39 16 9 C -0.11 -1.39 5.12 30.59 0.16 -1.23 16 10 C -0.10 -1.95 2.17 -11.54 -0.03 -1.98 16 11 H 0.12 1.91 7.16 -2.38 -0.02 1.89 16 12 C 0.52 13.79 5.56 87.66 0.49 14.27 16 13 O -0.58 -19.33 12.95 -3.04 -0.04 -19.37 16 14 N -0.61 -16.20 3.01 -817.96 -2.46 -18.67 16 15 C 0.12 2.70 5.02 86.35 0.43 3.13 16 16 C 0.05 1.53 4.98 86.38 0.43 1.96 16 17 N -0.53 -21.24 4.83 -899.82 -4.35 -25.58 16 18 C 0.20 10.05 5.21 85.56 0.45 10.50 16 19 C -0.56 -30.15 7.93 25.60 0.20 -29.95 16 20 H 0.06 3.00 5.86 -2.91 -0.02 2.98 16 21 C 0.01 0.77 5.46 84.65 0.46 1.23 16 22 N -0.92 -54.05 13.29 21.45 0.28 -53.77 16 23 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 24 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 26 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 27 C 0.05 2.01 5.37 86.38 0.46 2.47 16 28 C 0.13 3.78 6.61 86.35 0.57 4.35 16 29 C -0.08 -1.68 3.69 30.59 0.11 -1.57 16 30 H 0.07 0.92 8.13 -2.39 -0.02 0.91 16 31 H 0.05 0.90 8.13 -2.39 -0.02 0.88 16 32 H 0.13 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.08 1.14 8.11 -2.39 -0.02 1.12 16 35 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.05 0.85 7.22 -2.39 -0.02 0.83 16 37 H 0.09 0.95 5.83 -2.39 -0.01 0.93 16 38 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.12 1.90 5.20 -2.38 -0.01 1.88 16 40 H 0.10 1.86 8.07 -2.39 -0.02 1.84 16 41 H 0.02 0.74 6.21 -2.39 -0.01 0.72 16 42 H 0.08 2.73 8.11 -2.39 -0.02 2.71 16 43 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.01 0.33 7.89 -2.38 -0.02 0.31 16 45 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 46 H 0.07 2.73 7.94 -2.39 -0.02 2.71 16 47 H 0.01 0.34 7.75 -2.38 -0.02 0.32 16 48 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.08 2.56 7.04 -2.39 -0.02 2.54 16 50 H 0.09 1.69 8.10 -2.39 -0.02 1.68 16 51 H 0.05 1.30 8.10 -2.38 -0.02 1.28 16 Total: -1.00 -71.40 386.59 1.95 -69.45 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.92 Total: 14.19 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 5.76 Total: 12.05 kcal Atomic # 7 Polarization: -91.49 SS G_CDS: -6.52 Total: -98.01 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -0.23 Total: -43.50 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -71.40 1.95 -69.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602209482.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.369 kcal (2) G-P(sol) polarization free energy of solvation -71.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds