Wall clock time and date at job start Tue Mar 31 2020 22:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45190 * 1 3 3 C 1.34226 * 117.00427 * 2 1 4 4 O 1.20828 * 120.00010 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00337 * 180.02562 * 3 2 1 6 6 H 1.08992 * 109.47401 * 59.99375 * 5 3 2 7 7 C 1.53006 * 109.46683 * 299.99536 * 5 3 2 8 8 C 1.53001 * 109.46950 * 180.02562 * 7 5 3 9 9 C 1.52992 * 109.47095 * 60.00151 * 8 7 5 10 10 C 1.52997 * 109.47352 * 300.00112 * 9 8 7 11 11 H 1.09006 * 109.46963 * 299.99675 * 10 9 8 12 12 C 1.50701 * 109.47494 * 180.02562 * 10 9 8 13 13 O 1.21277 * 120.00168 * 239.99873 * 12 10 9 14 14 N 1.34783 * 119.99795 * 59.99482 * 12 10 9 15 15 C 1.46498 * 119.99648 * 179.97438 * 14 12 10 16 16 C 1.53041 * 109.45836 * 155.00239 * 15 14 12 17 17 C 1.53193 * 109.31517 * 181.39069 * 16 15 14 18 18 N 1.46927 * 108.77129 * 305.36261 * 17 16 15 19 19 C 1.36940 * 120.63079 * 233.58330 * 18 17 16 20 20 H 1.07996 * 119.99881 * 29.31264 * 19 18 17 21 21 C 1.38810 * 120.00019 * 209.30756 * 19 18 17 22 22 N 1.31624 * 119.99803 * 24.34685 * 21 19 18 23 23 Si 1.86801 * 120.00199 * 204.34637 * 21 19 18 24 24 H 1.48499 * 109.47165 * 180.02562 * 23 21 19 25 25 H 1.48498 * 109.47155 * 59.99883 * 23 21 19 26 26 H 1.48506 * 109.46826 * 300.00225 * 23 21 19 27 27 C 1.46931 * 118.73904 * 53.86573 * 18 17 16 28 28 C 1.53040 * 109.46365 * 275.07226 * 15 14 12 29 29 C 1.52994 * 109.47274 * 60.00093 * 10 9 8 30 30 H 1.08999 * 109.47556 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47459 * 300.00338 * 1 2 3 32 32 H 1.09007 * 109.47612 * 59.99931 * 1 2 3 33 33 H 1.08999 * 109.47074 * 60.00415 * 7 5 3 34 34 H 1.08996 * 109.47536 * 299.99956 * 7 5 3 35 35 H 1.09005 * 109.46977 * 300.00028 * 8 7 5 36 36 H 1.09001 * 109.47251 * 180.02562 * 8 7 5 37 37 H 1.09002 * 109.47313 * 180.02562 * 9 8 7 38 38 H 1.08996 * 109.47199 * 60.00297 * 9 8 7 39 39 H 0.96997 * 120.00245 * 0.02562 * 14 12 10 40 40 H 1.09001 * 109.44796 * 35.04198 * 15 14 12 41 41 H 1.09002 * 109.50003 * 61.43600 * 16 15 14 42 42 H 1.09003 * 109.50168 * 301.34019 * 16 15 14 43 43 H 1.09000 * 109.58780 * 185.58431 * 17 16 15 44 44 H 1.08998 * 109.58842 * 65.15152 * 17 16 15 45 45 H 0.96995 * 120.00246 * 5.77739 * 22 21 19 46 46 H 1.08990 * 109.58604 * 65.91982 * 27 18 17 47 47 H 1.09003 * 109.58604 * 186.35046 * 27 18 17 48 48 H 1.09003 * 109.49715 * 298.56409 * 28 15 14 49 49 H 1.08999 * 109.49714 * 58.63495 * 28 15 14 50 50 H 1.08993 * 109.47647 * 60.00065 * 29 10 9 51 51 H 1.09000 * 109.47146 * 180.02562 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 1 3.9557 0.7808 -0.8907 7 6 4.1138 0.5810 1.2484 8 6 5.6416 0.6616 1.2482 9 6 6.0749 2.1288 1.2486 10 6 5.5275 2.8227 -0.0003 11 1 5.9173 2.3290 -0.8905 12 6 5.9548 4.2678 -0.0002 13 8 5.1196 5.1471 0.0002 14 7 7.2653 4.5830 -0.0006 15 6 7.6806 5.9879 -0.0011 16 6 9.0794 6.1062 0.6084 17 6 9.4963 7.5800 0.6380 18 7 9.3807 8.1315 -0.7189 19 6 10.4427 8.7648 -1.3074 20 1 11.4519 8.4830 -1.0460 21 6 10.2220 9.7688 -2.2402 22 7 9.0921 10.4438 -2.2255 23 14 11.5284 10.1621 -3.5161 24 1 11.0525 11.2660 -4.3879 25 1 11.7922 8.9567 -4.3422 26 1 12.7796 10.5767 -2.8318 27 6 8.1021 7.9961 -1.4300 28 6 7.7026 6.5126 -1.4386 29 6 3.9997 2.7421 -0.0001 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 3.8047 -0.4643 1.2484 34 1 3.7244 1.0749 2.1386 35 1 6.0314 0.1678 0.3580 36 1 6.0317 0.1669 2.1378 37 1 7.1634 2.1863 1.2480 38 1 5.6852 2.6225 2.1388 39 1 7.9333 3.8798 -0.0012 40 1 6.9767 6.5747 0.5890 41 1 9.7885 5.5397 0.0046 42 1 9.0684 5.7108 1.6241 43 1 10.5285 7.6611 0.9786 44 1 8.8420 8.1313 1.3135 45 1 8.4494 10.2984 -1.5137 46 1 7.3366 8.5805 -0.9197 47 1 8.2141 8.3517 -2.4543 48 1 8.4246 5.9423 -2.0231 49 1 6.7117 6.4060 -1.8800 50 1 3.6099 3.2358 0.8900 51 1 3.6097 3.2361 -0.8901 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610427144.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:04 Heat of formation + Delta-G solvation = -130.817477 kcal Electronic energy + Delta-G solvation = -30094.379089 eV Core-core repulsion = 25993.055638 eV Total energy + Delta-G solvation = -4101.323452 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.12984 -40.08678 -38.26421 -37.23387 -36.67256 -34.60772 -32.61100 -31.69904 -31.25444 -30.12765 -29.19563 -28.07758 -25.13802 -24.36299 -23.65313 -22.41372 -21.83169 -21.41129 -20.33138 -19.98031 -19.27064 -17.97971 -17.49597 -17.24235 -16.76471 -16.30811 -15.89506 -15.46654 -15.00184 -14.57368 -14.39503 -14.19583 -14.00734 -13.88012 -13.51543 -13.49977 -13.35786 -13.16071 -12.92070 -12.87414 -12.65583 -12.42387 -12.26836 -11.82405 -11.66601 -11.56557 -11.28506 -11.17955 -11.12370 -11.06536 -10.79563 -10.73917 -10.65096 -10.47076 -10.43733 -10.22302 -10.01124 -9.98210 -9.57167 -9.26187 -8.73256 -8.35760 -6.87923 -6.05145 -3.23808 1.88700 2.32690 2.75499 3.29947 3.49959 3.53249 3.71652 4.13396 4.25221 4.28732 4.59006 4.60341 4.69679 4.73681 4.77375 4.81549 4.86980 4.91558 5.01927 5.11055 5.17128 5.20261 5.23905 5.32546 5.43207 5.52267 5.53839 5.58767 5.59592 5.73509 5.74489 5.77462 5.94113 5.95681 6.02141 6.12888 6.14130 6.26268 6.28070 6.46836 6.54340 6.65466 6.78463 6.83929 7.07552 7.21572 7.42650 7.67754 8.01717 8.38638 8.59056 9.12619 9.85439 10.30551 11.22996 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.024243 B = 0.002089 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.680299 B =13402.201725 C =14012.738794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.361 6.361 3 C 0.462 3.538 4 O -0.499 6.499 5 C -0.078 4.078 6 H 0.111 0.889 7 C -0.112 4.112 8 C -0.115 4.115 9 C -0.114 4.114 10 C -0.106 4.106 11 H 0.099 0.901 12 C 0.514 3.486 13 O -0.536 6.536 14 N -0.724 5.724 15 C 0.151 3.849 16 C -0.138 4.138 17 C 0.150 3.850 18 N -0.599 5.599 19 C -0.352 4.352 20 H 0.055 0.945 21 C -0.024 4.024 22 N -0.914 5.914 23 Si 1.065 2.935 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.154 3.846 28 C -0.141 4.141 29 C -0.084 4.084 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.395 0.605 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.018 0.982 45 H 0.270 0.730 46 H 0.020 0.980 47 H 0.080 0.920 48 H 0.058 0.942 49 H 0.054 0.946 50 H 0.081 0.919 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.258 -26.471 7.056 29.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.277 6.277 3 C 0.305 3.695 4 O -0.385 6.385 5 C -0.097 4.097 6 H 0.128 0.872 7 C -0.150 4.150 8 C -0.152 4.152 9 C -0.152 4.152 10 C -0.127 4.127 11 H 0.117 0.883 12 C 0.299 3.701 13 O -0.412 6.412 14 N -0.374 5.374 15 C 0.048 3.952 16 C -0.178 4.178 17 C 0.023 3.977 18 N -0.323 5.323 19 C -0.481 4.481 20 H 0.073 0.927 21 C -0.227 4.227 22 N -0.554 5.554 23 Si 0.895 3.105 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.220 1.220 27 C 0.027 3.973 28 C -0.182 4.182 29 C -0.122 4.122 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.228 0.772 40 H 0.099 0.901 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.036 0.964 45 H 0.081 0.919 46 H 0.038 0.962 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.073 0.927 50 H 0.100 0.900 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.738 -24.552 5.718 27.401 hybrid contribution -0.245 -1.281 1.313 1.851 sum -10.983 -25.833 7.031 28.938 Atomic orbital electron populations 1.23271 0.76377 1.03643 1.02676 1.86495 1.23401 1.33613 1.84221 1.23826 0.92060 0.81307 0.72349 1.90717 1.67090 1.36291 1.44378 1.21131 0.86807 0.99614 1.02161 0.87154 1.21568 0.96349 1.00964 0.96111 1.21521 0.94588 0.96195 1.02912 1.21588 1.00941 0.95556 0.97127 1.21326 0.97019 0.93637 1.00729 0.88339 1.20462 0.82714 0.90765 0.76167 1.90735 1.51394 1.50074 1.49003 1.46301 1.06823 1.09301 1.74995 1.20988 0.96122 0.80302 0.97812 1.22316 0.95278 1.00906 0.99275 1.20841 0.98933 0.89970 0.87977 1.44171 1.11054 1.66147 1.10946 1.19941 0.86715 1.16091 1.25316 0.92689 1.25895 1.02089 0.92430 1.02255 1.70774 1.11007 1.37573 1.36039 0.83522 0.74579 0.75983 0.76406 1.21089 1.22074 1.21983 1.21009 0.87006 0.90788 0.98460 1.22507 1.00336 1.00129 0.95188 1.21225 0.93122 0.92482 1.05400 0.88092 0.91886 0.91848 0.90344 0.91169 0.91167 0.90810 0.90933 0.91035 0.77188 0.90141 0.91797 0.92552 0.92199 0.96416 0.91949 0.96241 0.90138 0.92337 0.92712 0.90048 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.56 101.05 1.07 1.28 16 2 O -0.36 -3.12 10.47 -39.25 -0.41 -3.53 16 3 C 0.46 4.75 7.25 36.01 0.26 5.01 16 4 O -0.50 -6.91 15.73 -18.75 -0.29 -7.20 16 5 C -0.08 -0.62 2.63 -91.77 -0.24 -0.86 16 6 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 7 C -0.11 -0.69 5.14 -26.73 -0.14 -0.83 16 8 C -0.11 -0.59 5.92 -26.73 -0.16 -0.75 16 9 C -0.11 -0.81 5.10 -26.74 -0.14 -0.94 16 10 C -0.11 -1.00 2.52 -91.78 -0.23 -1.23 16 11 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 12 C 0.51 7.20 7.12 -10.98 -0.08 7.12 16 13 O -0.54 -10.10 15.65 5.56 0.09 -10.01 16 14 N -0.72 -9.61 4.97 -53.76 -0.27 -9.87 16 15 C 0.15 2.58 2.41 -67.89 -0.16 2.42 16 16 C -0.14 -2.26 5.55 -26.61 -0.15 -2.41 16 17 C 0.15 3.10 6.51 -3.71 -0.02 3.07 16 18 N -0.60 -15.00 2.83 -172.05 -0.49 -15.48 16 19 C -0.35 -9.78 9.48 -15.06 -0.14 -9.92 16 20 H 0.06 1.52 7.94 -52.49 -0.42 1.11 16 21 C -0.02 -0.69 4.69 -17.43 -0.08 -0.77 16 22 N -0.91 -27.74 12.45 55.49 0.69 -27.05 16 23 Si 1.07 25.29 29.98 -169.99 -5.10 20.19 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.15 3.71 4.72 -3.48 -0.02 3.69 16 28 C -0.14 -2.80 5.67 -26.38 -0.15 -2.95 16 29 C -0.08 -0.90 3.06 -26.73 -0.08 -0.98 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 32 H 0.06 0.42 8.13 -51.92 -0.42 0.00 16 33 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.07 0.44 7.56 -51.93 -0.39 0.04 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.39 4.00 8.02 -40.82 -0.33 3.67 16 40 H 0.08 1.57 7.58 -51.93 -0.39 1.17 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.22 7.93 -51.93 -0.41 0.81 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.27 8.29 6.71 -40.82 -0.27 8.02 16 46 H 0.02 0.49 7.85 -51.93 -0.41 0.08 16 47 H 0.08 2.17 6.38 -51.93 -0.33 1.84 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 50 H 0.08 1.03 8.06 -51.93 -0.42 0.62 16 51 H 0.08 1.04 8.06 -51.93 -0.42 0.62 16 LS Contribution 399.92 15.07 6.03 6.03 Total: -1.00 -35.11 399.92 -9.14 -44.25 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -8.93 Total: 1.73 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.46 Total: 0.95 kcal Atomic # 7 Polarization: -52.34 SS G_CDS: -0.06 Total: -52.41 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.62 Total: -20.75 kcal Atomic # 14 Polarization: 25.29 SS G_CDS: -5.10 Total: 20.19 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.11 -9.14 -44.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610427144.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.564 kcal (2) G-P(sol) polarization free energy of solvation -35.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds