Wall clock time and date at job start Tue Mar 31 2020 22:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99999 * 2 1 4 4 O 1.20826 * 119.99692 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00233 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47032 * 300.00101 * 5 3 2 7 7 C 1.53002 * 109.46972 * 59.99500 * 5 3 2 8 8 C 1.53001 * 109.46902 * 180.02562 * 7 5 3 9 9 C 1.53005 * 109.47066 * 300.00382 * 8 7 5 10 10 C 1.52995 * 109.47177 * 60.00286 * 9 8 7 11 11 H 1.08998 * 109.47158 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47316 * 59.99416 * 10 9 8 13 13 O 1.21277 * 120.00473 * 240.00200 * 12 10 9 14 14 N 1.34782 * 119.99485 * 60.00144 * 12 10 9 15 15 C 1.46503 * 119.99939 * 179.97438 * 14 12 10 16 16 C 1.53039 * 109.46237 * 84.97105 * 15 14 12 17 17 C 1.53164 * 109.32831 * 181.38677 * 16 15 14 18 18 N 1.46923 * 108.76665 * 305.35727 * 17 16 15 19 19 C 1.36944 * 120.62817 * 233.58802 * 18 17 16 20 20 H 1.08002 * 119.99574 * 27.69832 * 19 18 17 21 21 C 1.38804 * 119.99723 * 207.70224 * 19 18 17 22 22 N 1.31617 * 120.00554 * 17.35018 * 21 19 18 23 23 Si 1.86804 * 119.99695 * 197.35734 * 21 19 18 24 24 H 1.48494 * 109.47415 * 59.99802 * 23 21 19 25 25 H 1.48506 * 109.47200 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46821 * 299.99362 * 23 21 19 27 27 C 1.46917 * 118.73848 * 53.61183 * 18 17 16 28 28 C 1.53033 * 109.46067 * 205.02891 * 15 14 12 29 29 C 1.52993 * 109.47391 * 179.97438 * 5 3 2 30 30 H 1.09007 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47510 * 300.00032 * 1 2 3 32 32 H 1.08997 * 109.47406 * 60.00284 * 1 2 3 33 33 H 1.08998 * 109.47554 * 300.00453 * 7 5 3 34 34 H 1.09003 * 109.46752 * 60.00429 * 7 5 3 35 35 H 1.08995 * 109.46942 * 60.00416 * 8 7 5 36 36 H 1.09008 * 109.46993 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.47268 * 299.99834 * 9 8 7 38 38 H 1.09004 * 109.46554 * 180.02562 * 9 8 7 39 39 H 0.96999 * 120.00252 * 359.97438 * 14 12 10 40 40 H 1.09006 * 109.45642 * 324.99968 * 15 14 12 41 41 H 1.08999 * 109.49720 * 301.32678 * 16 15 14 42 42 H 1.09006 * 109.49478 * 61.41714 * 16 15 14 43 43 H 1.08995 * 109.58649 * 185.56894 * 17 16 15 44 44 H 1.08995 * 109.70609 * 65.21397 * 17 16 15 45 45 H 0.96998 * 120.00355 * 180.02562 * 22 21 19 46 46 H 1.09006 * 109.58578 * 186.60434 * 27 18 17 47 47 H 1.08995 * 109.70784 * 66.24812 * 27 18 17 48 48 H 1.08997 * 109.49774 * 298.57820 * 28 15 14 49 49 H 1.08999 * 109.50044 * 58.64145 * 28 15 14 50 50 H 1.09008 * 109.47002 * 59.99981 * 29 5 3 51 51 H 1.09003 * 109.47122 * 300.00054 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7806 0.8892 7 6 4.1128 0.5815 -1.2501 8 6 5.6408 0.6611 -1.2504 9 6 6.0750 2.1282 -1.2500 10 6 5.5285 2.8215 -0.0004 11 1 5.8383 3.8665 0.0001 12 6 6.0673 2.1377 1.2297 13 8 5.3044 1.6361 2.0280 14 7 7.3971 2.0836 1.4427 15 6 7.9209 1.4193 2.6388 16 6 8.0497 -0.0823 2.3730 17 6 8.5647 -0.7784 3.6364 18 7 9.8148 -0.1308 4.0567 19 6 10.9489 -0.8704 4.2619 20 1 11.0947 -1.7957 3.7244 21 6 11.9109 -0.4307 5.1608 22 7 11.6061 0.4854 6.0553 23 14 13.6383 -1.1392 5.1007 24 1 14.2392 -0.8667 3.7704 25 1 14.4693 -0.5078 6.1573 26 1 13.5799 -2.6057 5.3266 27 6 9.8247 1.3252 4.2531 28 6 9.2954 1.9977 2.9825 29 6 4.0001 2.7421 -0.0011 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.8038 -0.4638 -1.2503 34 1 3.7227 1.0758 -2.1399 35 1 6.0304 0.1666 -0.3607 36 1 6.0302 0.1675 -2.1409 37 1 5.6854 2.6227 -2.1397 38 1 7.1636 2.1848 -1.2506 39 1 8.0073 2.4844 0.8040 40 1 7.2389 1.5832 3.4732 41 1 7.0746 -0.4894 2.1056 42 1 8.7505 -0.2481 1.5547 43 1 8.7520 -1.8307 3.4232 44 1 7.8237 -0.6929 4.4312 45 1 12.2785 0.7929 6.6831 46 1 10.8436 1.6608 4.4468 47 1 9.1872 1.5865 5.0976 48 1 9.9845 1.8123 2.1586 49 1 9.2072 3.0714 3.1484 50 1 3.6106 3.2364 0.8890 51 1 3.6100 3.2360 -0.8911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610427145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:08 Heat of formation + Delta-G solvation = -123.631887 kcal Electronic energy + Delta-G solvation = -30889.083841 eV Core-core repulsion = 26788.071980 eV Total energy + Delta-G solvation = -4101.011861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.15049 -40.11557 -38.03072 -36.89830 -36.43364 -34.49677 -32.53264 -31.55234 -31.09909 -30.09092 -29.30756 -27.92283 -25.26572 -24.21631 -23.56825 -22.32779 -22.00030 -21.32904 -20.54251 -19.80636 -18.92950 -17.74722 -17.09929 -16.92771 -16.54349 -16.31498 -15.79984 -15.31723 -14.94693 -14.79402 -14.34752 -14.06081 -13.96785 -13.64111 -13.54119 -13.35703 -13.00967 -12.96121 -12.75812 -12.73488 -12.44470 -12.29181 -12.20365 -12.11528 -11.49946 -11.37618 -11.20173 -11.12563 -10.99589 -10.87673 -10.85029 -10.72469 -10.51116 -10.45004 -10.30575 -10.27345 -10.05129 -9.80988 -9.65764 -9.33173 -8.71285 -8.46345 -6.70465 -5.80799 -3.22666 2.09030 2.56421 2.74852 3.33326 3.38129 3.43194 3.44096 4.29794 4.41180 4.46759 4.48365 4.72716 4.84143 4.87197 4.91991 4.94811 4.97334 5.10097 5.22216 5.26395 5.30966 5.34024 5.41875 5.46612 5.49649 5.57488 5.62362 5.70931 5.77345 5.86485 5.90120 5.92182 6.03794 6.06202 6.11321 6.23921 6.26882 6.35479 6.51807 6.53683 6.58717 6.78139 6.91081 6.97893 7.30234 7.58310 7.61279 7.71557 7.78422 8.38818 8.43160 9.19362 9.82766 10.39493 11.28092 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.002407 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.745865 B =11629.294819 C =11922.088004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.470 3.530 4 O -0.513 6.513 5 C -0.093 4.093 6 H 0.140 0.860 7 C -0.108 4.108 8 C -0.122 4.122 9 C -0.112 4.112 10 C -0.110 4.110 11 H 0.102 0.898 12 C 0.516 3.484 13 O -0.541 6.541 14 N -0.722 5.722 15 C 0.150 3.850 16 C -0.137 4.137 17 C 0.147 3.853 18 N -0.592 5.592 19 C -0.253 4.253 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.903 3.097 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.174 3.826 28 C -0.146 4.146 29 C -0.079 4.079 30 H 0.100 0.900 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.395 0.605 40 H 0.081 0.919 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.055 0.945 44 H 0.020 0.980 45 H 0.255 0.745 46 H 0.092 0.908 47 H 0.020 0.980 48 H 0.059 0.941 49 H 0.053 0.947 50 H 0.078 0.922 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.552 3.868 -17.404 23.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.313 3.687 4 O -0.401 6.401 5 C -0.112 4.112 6 H 0.157 0.843 7 C -0.146 4.146 8 C -0.160 4.160 9 C -0.150 4.150 10 C -0.132 4.132 11 H 0.120 0.880 12 C 0.302 3.698 13 O -0.419 6.419 14 N -0.371 5.371 15 C 0.047 3.953 16 C -0.177 4.177 17 C 0.020 3.980 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.732 3.268 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.209 1.209 27 C 0.047 3.953 28 C -0.186 4.186 29 C -0.117 4.117 30 H 0.118 0.882 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.229 0.771 40 H 0.099 0.901 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.038 0.962 45 H 0.065 0.935 46 H 0.110 0.890 47 H 0.038 0.962 48 H 0.078 0.922 49 H 0.072 0.928 50 H 0.097 0.903 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.209 3.851 -16.667 23.566 hybrid contribution 0.946 -0.002 -0.232 0.974 sum -15.263 3.849 -16.898 23.094 Atomic orbital electron populations 1.23246 0.76713 1.03588 1.02400 1.86532 1.23141 1.33728 1.84054 1.23964 0.92185 0.81086 0.71448 1.90635 1.67360 1.36418 1.45702 1.21448 0.86342 0.99763 1.03607 0.84275 1.21516 0.96138 1.01081 0.95853 1.21579 0.94899 0.96416 1.03078 1.21574 1.00919 0.95959 0.96541 1.21430 0.96631 1.01167 0.93944 0.88015 1.20506 0.82593 0.79699 0.86999 1.90614 1.56935 1.47255 1.47054 1.46375 1.06628 1.58099 1.25995 1.21045 0.95666 0.92242 0.86374 1.22350 0.99936 0.94930 1.00509 1.20862 0.88836 0.95614 0.92665 1.44082 1.05986 1.02173 1.79264 1.19148 0.95426 1.05778 1.17869 0.91674 1.25039 0.99623 0.99613 0.95395 1.70016 1.33007 1.33349 1.18409 0.86368 0.84592 0.78654 0.77142 1.21067 1.21650 1.20870 1.20737 1.01412 0.82870 0.90248 1.22526 0.94629 0.99005 1.02463 1.21182 0.92768 0.94107 1.03669 0.88172 0.91946 0.92086 0.90551 0.91657 0.91084 0.90934 0.90645 0.91002 0.77131 0.90075 0.92787 0.92362 0.92635 0.96239 0.93537 0.89033 0.96163 0.92220 0.92810 0.90337 0.90626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -4.07 10.47 -39.25 -0.41 -4.48 16 3 C 0.47 5.88 7.26 36.00 0.26 6.14 16 4 O -0.51 -7.47 15.73 -18.75 -0.29 -7.76 16 5 C -0.09 -1.05 2.33 -91.78 -0.21 -1.26 16 6 H 0.14 1.89 5.51 -51.93 -0.29 1.60 16 7 C -0.11 -0.96 5.13 -26.73 -0.14 -1.10 16 8 C -0.12 -1.03 5.70 -26.73 -0.15 -1.19 16 9 C -0.11 -0.83 5.35 -26.73 -0.14 -0.97 16 10 C -0.11 -1.02 3.01 -91.75 -0.28 -1.30 16 11 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 12 C 0.52 6.65 5.60 -10.98 -0.06 6.59 16 13 O -0.54 -8.95 13.32 5.56 0.07 -8.88 16 14 N -0.72 -9.16 4.97 -53.77 -0.27 -9.43 16 15 C 0.15 2.48 2.42 -67.89 -0.16 2.31 16 16 C -0.14 -2.38 5.65 -26.63 -0.15 -2.53 16 17 C 0.15 3.10 6.52 -3.73 -0.02 3.08 16 18 N -0.59 -14.55 2.99 -172.35 -0.52 -15.06 16 19 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 20 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 21 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 22 N -0.90 -25.87 11.19 55.49 0.62 -25.25 16 23 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C 0.17 4.01 5.31 -3.71 -0.02 3.99 16 28 C -0.15 -2.59 5.55 -26.61 -0.15 -2.73 16 29 C -0.08 -0.84 3.67 -26.71 -0.10 -0.94 16 30 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 32 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 33 H 0.08 0.67 8.11 -51.93 -0.42 0.25 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.75 7.22 -51.93 -0.37 0.38 16 36 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.47 7.57 -51.93 -0.39 0.08 16 39 H 0.40 3.99 8.02 -40.82 -0.33 3.66 16 40 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.09 2.36 6.04 -51.93 -0.31 2.04 16 47 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 50 H 0.08 0.97 8.06 -51.92 -0.42 0.55 16 51 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -32.16 394.29 -9.18 -41.34 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -8.80 Total: 2.82 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -0.49 Total: 4.43 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.16 Total: -49.74 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.63 Total: -21.12 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.16 -9.18 -41.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610427145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.292 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds