Wall clock time and date at job start Tue Mar 31 2020 22:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34229 * 116.99999 * 2 1 4 4 O 1.20826 * 119.99692 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00233 * 180.02562 * 3 2 1 6 6 H 1.09003 * 109.47032 * 300.00101 * 5 3 2 7 7 C 1.53002 * 109.46972 * 59.99500 * 5 3 2 8 8 C 1.53001 * 109.46902 * 180.02562 * 7 5 3 9 9 C 1.53005 * 109.47066 * 300.00382 * 8 7 5 10 10 C 1.52995 * 109.47177 * 60.00286 * 9 8 7 11 11 H 1.08998 * 109.47158 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47316 * 59.99416 * 10 9 8 13 13 O 1.21277 * 120.00473 * 240.00200 * 12 10 9 14 14 N 1.34782 * 119.99485 * 60.00144 * 12 10 9 15 15 C 1.46503 * 119.99939 * 179.97438 * 14 12 10 16 16 C 1.53039 * 109.46237 * 84.97105 * 15 14 12 17 17 C 1.53164 * 109.32831 * 181.38677 * 16 15 14 18 18 N 1.46923 * 108.76665 * 305.35727 * 17 16 15 19 19 C 1.36944 * 120.62817 * 233.58802 * 18 17 16 20 20 H 1.08002 * 119.99574 * 27.69832 * 19 18 17 21 21 C 1.38804 * 119.99723 * 207.70224 * 19 18 17 22 22 N 1.31617 * 120.00554 * 17.35018 * 21 19 18 23 23 Si 1.86804 * 119.99695 * 197.35734 * 21 19 18 24 24 H 1.48494 * 109.47415 * 59.99802 * 23 21 19 25 25 H 1.48506 * 109.47200 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.46821 * 299.99362 * 23 21 19 27 27 C 1.46917 * 118.73848 * 53.61183 * 18 17 16 28 28 C 1.53033 * 109.46067 * 205.02891 * 15 14 12 29 29 C 1.52993 * 109.47391 * 179.97438 * 5 3 2 30 30 H 1.09007 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47510 * 300.00032 * 1 2 3 32 32 H 1.08997 * 109.47406 * 60.00284 * 1 2 3 33 33 H 1.08998 * 109.47554 * 300.00453 * 7 5 3 34 34 H 1.09003 * 109.46752 * 60.00429 * 7 5 3 35 35 H 1.08995 * 109.46942 * 60.00416 * 8 7 5 36 36 H 1.09008 * 109.46993 * 180.02562 * 8 7 5 37 37 H 1.08995 * 109.47268 * 299.99834 * 9 8 7 38 38 H 1.09004 * 109.46554 * 180.02562 * 9 8 7 39 39 H 0.96999 * 120.00252 * 359.97438 * 14 12 10 40 40 H 1.09006 * 109.45642 * 324.99968 * 15 14 12 41 41 H 1.08999 * 109.49720 * 301.32678 * 16 15 14 42 42 H 1.09006 * 109.49478 * 61.41714 * 16 15 14 43 43 H 1.08995 * 109.58649 * 185.56894 * 17 16 15 44 44 H 1.08995 * 109.70609 * 65.21397 * 17 16 15 45 45 H 0.96998 * 120.00355 * 180.02562 * 22 21 19 46 46 H 1.09006 * 109.58578 * 186.60434 * 27 18 17 47 47 H 1.08995 * 109.70784 * 66.24812 * 27 18 17 48 48 H 1.08997 * 109.49774 * 298.57820 * 28 15 14 49 49 H 1.08999 * 109.50044 * 58.64145 * 28 15 14 50 50 H 1.09008 * 109.47002 * 59.99981 * 29 5 3 51 51 H 1.09003 * 109.47122 * 300.00054 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9564 0.7806 0.8892 7 6 4.1128 0.5815 -1.2501 8 6 5.6408 0.6611 -1.2504 9 6 6.0750 2.1282 -1.2500 10 6 5.5285 2.8215 -0.0004 11 1 5.8383 3.8665 0.0001 12 6 6.0673 2.1377 1.2297 13 8 5.3044 1.6361 2.0280 14 7 7.3971 2.0836 1.4427 15 6 7.9209 1.4193 2.6388 16 6 8.0497 -0.0823 2.3730 17 6 8.5647 -0.7784 3.6364 18 7 9.8148 -0.1308 4.0567 19 6 10.9489 -0.8704 4.2619 20 1 11.0947 -1.7957 3.7244 21 6 11.9109 -0.4307 5.1608 22 7 11.6061 0.4854 6.0553 23 14 13.6383 -1.1392 5.1007 24 1 14.2392 -0.8667 3.7704 25 1 14.4693 -0.5078 6.1573 26 1 13.5799 -2.6057 5.3266 27 6 9.8247 1.3252 4.2531 28 6 9.2954 1.9977 2.9825 29 6 4.0001 2.7421 -0.0011 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 3.8038 -0.4638 -1.2503 34 1 3.7227 1.0758 -2.1399 35 1 6.0304 0.1666 -0.3607 36 1 6.0302 0.1675 -2.1409 37 1 5.6854 2.6227 -2.1397 38 1 7.1636 2.1848 -1.2506 39 1 8.0073 2.4844 0.8040 40 1 7.2389 1.5832 3.4732 41 1 7.0746 -0.4894 2.1056 42 1 8.7505 -0.2481 1.5547 43 1 8.7520 -1.8307 3.4232 44 1 7.8237 -0.6929 4.4312 45 1 12.2785 0.7929 6.6831 46 1 10.8436 1.6608 4.4468 47 1 9.1872 1.5865 5.0976 48 1 9.9845 1.8123 2.1586 49 1 9.2072 3.0714 3.1484 50 1 3.6106 3.2364 0.8890 51 1 3.6100 3.2360 -0.8911 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610427145.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:02:07 Heat of formation + Delta-G solvation = -143.001801 kcal Electronic energy + Delta-G solvation = -30889.923784 eV Core-core repulsion = 26788.071980 eV Total energy + Delta-G solvation = -4101.851804 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.07313 -41.13411 -39.36035 -38.04068 -37.39086 -35.98174 -34.05071 -32.73634 -31.84860 -31.67788 -30.93437 -28.64028 -27.01714 -25.01992 -24.72250 -23.90279 -23.28887 -22.33619 -21.50216 -21.15487 -20.20863 -18.80627 -18.59861 -17.95458 -17.47178 -17.32479 -17.13078 -16.68176 -16.14813 -15.83389 -15.60144 -15.34626 -15.15973 -14.97049 -14.80191 -14.58214 -14.29975 -14.15400 -14.03279 -13.69111 -13.46732 -13.26107 -13.08456 -13.04687 -12.94233 -12.91849 -12.56286 -12.53162 -12.24670 -12.14797 -12.03031 -11.87951 -11.85670 -11.82835 -11.73180 -11.47726 -11.31977 -11.15570 -11.09538 -10.54201 -10.46244 -9.91370 -8.70798 -7.87229 -5.32601 1.12913 1.49433 1.51048 1.58285 1.73306 1.77033 2.26868 2.52681 3.28435 3.53047 3.62258 3.68169 3.71506 3.90122 3.96715 4.07446 4.12237 4.21022 4.25121 4.28335 4.28943 4.36176 4.39947 4.48053 4.49175 4.63639 4.66719 4.67607 4.74462 4.83605 4.87867 4.98008 5.02615 5.06354 5.08451 5.13290 5.17549 5.19784 5.24596 5.30184 5.31852 5.37969 5.46127 5.48952 5.64341 5.65433 5.72316 6.39119 6.67926 6.70365 7.14886 7.39170 7.84891 8.37448 9.19652 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.002407 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.745865 B =11629.294819 C =11922.088004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.468 3.532 4 O -0.539 6.539 5 C -0.093 4.093 6 H 0.114 0.886 7 C -0.103 4.103 8 C -0.122 4.122 9 C -0.108 4.108 10 C -0.100 4.100 11 H 0.129 0.871 12 C 0.514 3.486 13 O -0.581 6.581 14 N -0.709 5.709 15 C 0.163 3.837 16 C -0.120 4.120 17 C 0.144 3.856 18 N -0.608 5.608 19 C -0.263 4.263 20 H 0.068 0.932 21 C -0.051 4.051 22 N -0.937 5.937 23 Si 0.969 3.031 24 H -0.274 1.274 25 H -0.296 1.296 26 H -0.277 1.277 27 C 0.178 3.822 28 C -0.128 4.128 29 C -0.078 4.078 30 H 0.130 0.870 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.045 0.955 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.413 0.587 40 H 0.053 0.947 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.003 0.997 45 H 0.251 0.749 46 H 0.062 0.938 47 H -0.009 1.009 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.052 0.948 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.202 4.179 -20.764 26.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.313 3.687 4 O -0.429 6.429 5 C -0.112 4.112 6 H 0.131 0.869 7 C -0.140 4.140 8 C -0.159 4.159 9 C -0.146 4.146 10 C -0.120 4.120 11 H 0.147 0.853 12 C 0.302 3.698 13 O -0.461 6.461 14 N -0.360 5.360 15 C 0.058 3.942 16 C -0.160 4.160 17 C 0.017 3.983 18 N -0.332 5.332 19 C -0.393 4.393 20 H 0.086 0.914 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.797 3.203 24 H -0.200 1.200 25 H -0.222 1.222 26 H -0.203 1.203 27 C 0.051 3.949 28 C -0.168 4.168 29 C -0.116 4.116 30 H 0.148 0.852 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.250 0.750 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.021 0.979 45 H 0.060 0.940 46 H 0.081 0.919 47 H 0.009 0.991 48 H 0.090 0.910 49 H 0.093 0.907 50 H 0.071 0.929 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -15.868 4.158 -20.076 25.925 hybrid contribution 0.695 -0.168 0.880 1.134 sum -15.173 3.990 -19.196 24.792 Atomic orbital electron populations 1.23539 0.75049 1.05637 1.02442 1.86523 1.24896 1.33191 1.83631 1.24272 0.92752 0.81007 0.70682 1.90614 1.68017 1.37200 1.47095 1.21450 0.85547 1.00411 1.03767 0.86874 1.21516 0.96674 1.00817 0.95040 1.21592 0.94189 0.97379 1.02778 1.21639 1.01950 0.94885 0.96101 1.21458 0.95382 1.02428 0.92781 0.85287 1.21221 0.82000 0.78933 0.87626 1.90621 1.57878 1.48892 1.48741 1.46067 1.07111 1.57810 1.24999 1.20586 0.94431 0.91958 0.87254 1.22122 1.00151 0.95185 0.98505 1.20964 0.87329 0.96106 0.93856 1.44342 1.06570 1.02824 1.79451 1.19493 0.96315 1.06027 1.17507 0.91421 1.25813 1.03202 1.00366 0.95208 1.70184 1.33855 1.34937 1.19284 0.85322 0.79928 0.77920 0.77147 1.20005 1.22178 1.20333 1.20563 0.99379 0.82813 0.92125 1.22237 0.95119 0.99617 0.99777 1.21176 0.93791 0.93440 1.03161 0.85189 0.92540 0.91452 0.90801 0.89973 0.93568 0.88991 0.88057 0.89353 0.74994 0.92900 0.92136 0.91297 0.92534 0.97905 0.94042 0.91916 0.99119 0.90989 0.90679 0.92942 0.88959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.37 -8.19 10.47 -51.40 -0.54 -8.73 16 3 C 0.47 11.65 7.26 71.23 0.52 12.17 16 4 O -0.54 -15.69 15.73 21.96 0.35 -15.35 16 5 C -0.09 -2.04 2.33 -11.54 -0.03 -2.07 16 6 H 0.11 3.16 5.51 -2.39 -0.01 3.15 16 7 C -0.10 -1.62 5.13 30.60 0.16 -1.46 16 8 C -0.12 -1.69 5.70 30.60 0.17 -1.52 16 9 C -0.11 -1.14 5.35 30.59 0.16 -0.97 16 10 C -0.10 -1.56 3.01 -11.52 -0.03 -1.59 16 11 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 12 C 0.51 12.49 5.60 87.66 0.49 12.98 16 13 O -0.58 -19.43 13.32 -3.02 -0.04 -19.47 16 14 N -0.71 -16.43 4.97 -442.40 -2.20 -18.63 16 15 C 0.16 5.25 2.42 45.01 0.11 5.35 16 16 C -0.12 -4.07 5.65 30.66 0.17 -3.89 16 17 C 0.14 6.15 6.52 86.35 0.56 6.71 16 18 N -0.61 -30.43 2.99 -699.19 -2.09 -32.52 16 19 C -0.26 -14.34 9.58 84.03 0.81 -13.54 16 20 H 0.07 3.58 7.89 -2.91 -0.02 3.55 16 21 C -0.05 -2.80 4.91 84.86 0.42 -2.38 16 22 N -0.94 -55.16 11.19 21.65 0.24 -54.92 16 23 Si 0.97 44.15 29.59 68.60 2.03 46.18 16 24 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 25 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 27 C 0.18 8.41 5.31 86.37 0.46 8.86 16 28 C -0.13 -4.39 5.55 30.67 0.17 -4.22 16 29 C -0.08 -1.53 3.67 30.61 0.11 -1.42 16 30 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.06 0.94 8.13 -2.39 -0.02 0.92 16 32 H 0.07 0.96 8.13 -2.39 -0.02 0.94 16 33 H 0.07 1.19 8.11 -2.39 -0.02 1.17 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.05 0.89 7.22 -2.39 -0.02 0.87 16 36 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.09 0.70 7.57 -2.38 -0.02 0.68 16 39 H 0.41 6.79 8.02 -92.71 -0.74 6.05 16 40 H 0.05 2.04 7.58 -2.38 -0.02 2.02 16 41 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 43 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 44 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 45 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 46 H 0.06 3.33 6.04 -2.38 -0.01 3.31 16 47 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 48 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 49 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 50 H 0.05 1.30 8.06 -2.38 -0.02 1.28 16 51 H 0.09 1.52 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -73.11 394.29 3.37 -69.74 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.17 Total: 19.06 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 5.45 Total: 14.62 kcal Atomic # 7 Polarization: -102.01 SS G_CDS: -4.05 Total: -106.06 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.23 Total: -43.55 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -73.11 3.37 -69.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610427145.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.258 kcal (2) G-P(sol) polarization free energy of solvation -73.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds