Wall clock time and date at job start Tue Mar 31 2020 22:08:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99622 * 2 1 4 4 H 1.48502 * 109.46955 * 240.00127 * 3 2 1 5 5 H 1.48497 * 109.47338 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.46870 * 120.00555 * 3 2 1 7 7 C 1.37875 * 120.00187 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00291 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47575 * 180.02562 * 9 7 2 11 11 C 1.46954 * 111.00555 * 170.00081 * 10 9 7 12 12 C 1.53050 * 109.36797 * 183.18794 * 11 10 9 13 13 N 1.46955 * 109.36524 * 301.59643 * 12 11 10 14 14 C 1.46899 * 111.00247 * 183.18621 * 13 12 11 15 15 C 1.50698 * 109.46987 * 169.99899 * 14 13 12 16 16 O 1.21233 * 120.00440 * 0.02562 * 15 14 13 17 17 N 1.34777 * 119.99538 * 179.97438 * 15 14 13 18 18 C 1.34777 * 119.99727 * 179.72457 * 17 15 14 19 19 O 1.21543 * 119.99917 * 0.28125 * 18 17 15 20 20 N 1.34777 * 120.00128 * 180.27980 * 18 17 15 21 21 C 1.46499 * 120.00065 * 180.02562 * 20 18 17 22 22 C 1.54262 * 110.03550 * 272.90663 * 21 20 18 23 23 C 1.54961 * 104.16168 * 217.13809 * 22 21 20 24 24 C 1.54891 * 102.77680 * 37.88471 * 23 22 21 25 25 C 1.53877 * 110.03397 * 155.68879 * 21 20 18 26 26 C 1.46962 * 110.87938 * 59.32182 * 13 12 11 27 27 C 1.46957 * 110.99906 * 293.80272 * 10 9 7 28 28 H 0.96993 * 119.99973 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46701 * 59.99681 * 9 7 2 30 30 H 1.09004 * 109.47043 * 300.00752 * 9 7 2 31 31 H 1.09000 * 109.48633 * 63.21565 * 11 10 9 32 32 H 1.09009 * 109.50389 * 303.16753 * 11 10 9 33 33 H 1.08996 * 109.48853 * 181.63050 * 12 11 10 34 34 H 1.08998 * 109.48795 * 61.56605 * 12 11 10 35 35 H 1.09003 * 109.46477 * 50.00389 * 14 13 12 36 36 H 1.08993 * 109.47002 * 290.00715 * 14 13 12 37 37 H 0.97001 * 120.00485 * 0.02562 * 17 15 14 38 38 H 0.97000 * 119.99549 * 359.97438 * 20 18 17 39 39 H 1.08999 * 110.01985 * 34.29919 * 21 20 18 40 40 H 1.09005 * 110.48067 * 335.78264 * 22 21 20 41 41 H 1.09000 * 110.49027 * 98.42596 * 22 21 20 42 42 H 1.08993 * 110.72289 * 279.57107 * 23 22 21 43 43 H 1.09000 * 110.92572 * 156.29068 * 23 22 21 44 44 H 1.09005 * 110.48420 * 203.40345 * 24 23 22 45 45 H 1.09004 * 110.59638 * 80.82176 * 24 23 22 46 46 H 1.08994 * 110.03259 * 238.57472 * 25 21 20 47 47 H 1.09007 * 110.02975 * 359.97438 * 25 21 20 48 48 H 1.08995 * 109.49161 * 60.64344 * 26 13 12 49 49 H 1.08995 * 109.49057 * 180.71332 * 26 13 12 50 50 H 1.09005 * 109.48543 * 296.77286 * 27 10 9 51 51 H 1.08996 * 109.49108 * 56.84154 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 6 1.5211 -4.8940 0.2377 12 6 2.5567 -6.0187 0.3093 13 7 3.3197 -6.0592 -0.9460 14 6 4.2744 -7.1757 -0.9460 15 6 4.8583 -7.3372 -2.3259 16 8 4.5137 -6.5954 -3.2207 17 7 5.7645 -8.3058 -2.5649 18 6 6.2826 -8.4539 -3.8002 19 8 5.9364 -7.7106 -4.6975 20 7 7.1845 -9.4261 -4.0407 21 6 7.7481 -9.5866 -5.3833 22 6 6.8387 -10.4984 -6.2327 23 6 7.8280 -11.3302 -7.0875 24 6 8.9927 -11.5962 -6.1017 25 6 9.1173 -10.2840 -5.3004 26 6 4.0044 -4.7808 -1.1842 27 6 2.9688 -3.6561 -1.2558 28 1 -0.4850 0.8400 0.0004 29 1 0.6242 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 0.8255 -5.0914 -0.5780 32 1 0.9732 -4.8436 1.1787 33 1 2.0488 -6.9717 0.4570 34 1 3.2358 -5.8352 1.1419 35 1 3.7603 -8.0931 -0.6593 36 1 5.0741 -6.9698 -0.2347 37 1 6.0405 -8.8992 -1.8489 38 1 7.4610 -10.0189 -3.3245 39 1 7.8534 -8.6134 -5.8627 40 1 6.2470 -11.1512 -5.5910 41 1 6.1897 -9.9005 -6.8726 42 1 8.1730 -10.7554 -7.9468 43 1 7.3725 -12.2669 -7.4089 44 1 9.9147 -11.7996 -6.6465 45 1 8.7516 -12.4269 -5.4384 46 1 9.8867 -9.6495 -5.7402 47 1 9.3626 -10.5026 -4.2610 48 1 4.6999 -4.5833 -0.3686 49 1 4.5519 -4.8314 -2.1253 50 1 2.2896 -3.8396 -2.0884 51 1 3.4767 -2.7031 -1.4035 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611174441.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:22 Heat of formation + Delta-G solvation = -48.472097 kcal Electronic energy + Delta-G solvation = -29375.500273 eV Core-core repulsion = 25310.040336 eV Total energy + Delta-G solvation = -4065.459937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.36912 -39.53666 -38.50983 -37.48647 -34.88281 -34.77629 -33.79062 -32.43110 -30.37030 -29.44035 -29.22209 -28.06682 -26.62477 -24.39675 -23.05831 -22.48928 -21.31586 -21.18001 -20.84043 -20.49566 -19.21694 -19.06745 -17.30812 -16.47709 -16.32632 -16.21483 -15.92833 -15.57038 -15.15832 -15.00476 -14.55930 -14.43955 -14.28673 -14.15091 -13.86343 -13.85804 -13.45741 -13.14807 -12.96328 -12.56317 -12.08763 -11.98989 -11.96806 -11.67322 -11.64351 -11.53891 -11.28338 -11.13038 -11.11491 -11.04820 -10.81888 -10.67471 -10.61226 -10.40273 -10.27434 -10.16134 -9.79370 -9.46786 -9.44805 -9.13382 -8.37805 -8.17857 -7.16271 -5.96695 -3.97865 2.00719 2.06120 3.10447 3.38292 3.41663 3.44924 3.51991 4.03176 4.07774 4.14409 4.39172 4.44033 4.47794 4.90132 4.95685 4.99005 5.00349 5.01861 5.05220 5.08913 5.15838 5.28678 5.36390 5.38938 5.42295 5.56973 5.57708 5.60551 5.74636 5.76249 5.81455 5.85102 5.91520 5.96656 6.13601 6.19090 6.24343 6.27294 6.46935 6.66202 6.83381 7.09850 7.17391 7.29135 7.40333 7.44786 7.85795 7.96744 8.15181 8.16863 8.27208 8.61888 9.09221 9.65981 11.14181 Molecular weight = 338.21amu Principal moments of inertia in cm(-1) A = 0.022802 B = 0.001843 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.641318 B =15191.796666 C =15878.095741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.507 4.507 8 H 0.062 0.938 9 C 0.193 3.807 10 N -0.539 5.539 11 C 0.056 3.944 12 C 0.063 3.937 13 N -0.524 5.524 14 C 0.041 3.959 15 C 0.512 3.488 16 O -0.439 6.439 17 N -0.695 5.695 18 C 0.692 3.308 19 O -0.527 6.527 20 N -0.735 5.735 21 C 0.155 3.845 22 C -0.137 4.137 23 C -0.125 4.125 24 C -0.124 4.124 25 C -0.131 4.131 26 C 0.053 3.947 27 C 0.070 3.930 28 H 0.261 0.739 29 H -0.008 1.008 30 H 0.030 0.970 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.042 0.958 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.406 0.594 38 H 0.396 0.604 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.035 0.965 49 H 0.086 0.914 50 H 0.031 0.969 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.470 -28.923 -5.625 34.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.068 3.932 10 N -0.265 5.265 11 C -0.073 4.073 12 C -0.064 4.064 13 N -0.250 5.250 14 C -0.091 4.091 15 C 0.297 3.703 16 O -0.303 6.303 17 N -0.363 5.363 18 C 0.392 3.608 19 O -0.398 6.398 20 N -0.393 5.393 21 C 0.050 3.950 22 C -0.175 4.175 23 C -0.163 4.163 24 C -0.162 4.162 25 C -0.169 4.169 26 C -0.075 4.075 27 C -0.058 4.058 28 H 0.071 0.929 29 H 0.010 0.990 30 H 0.048 0.952 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.124 0.876 36 H 0.085 0.915 37 H 0.241 0.759 38 H 0.230 0.770 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.053 0.947 49 H 0.104 0.896 50 H 0.050 0.950 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 17.725 -27.551 -7.029 33.506 hybrid contribution 0.681 0.171 0.860 1.110 sum 18.405 -27.380 -6.169 33.563 Atomic orbital electron populations 1.69949 1.06039 1.26809 1.51038 1.24985 0.94865 0.99268 0.95497 0.86564 0.79433 0.82804 0.78610 1.20255 1.21389 1.20247 1.21120 0.93415 0.89994 1.50026 0.91998 1.19695 0.90068 0.87290 0.96120 1.62315 1.28058 1.02668 1.33434 1.22051 0.94669 0.89979 1.00602 1.22200 0.96115 0.98950 0.89165 1.61898 1.24883 1.02941 1.35265 1.21934 0.96707 0.98226 0.92237 1.20969 0.78112 0.79528 0.91739 1.90846 1.54494 1.39517 1.45483 1.44273 1.43875 1.36000 1.12103 1.16197 0.79932 0.81808 0.82837 1.91092 1.61044 1.44716 1.42976 1.45486 1.45732 1.35073 1.12972 1.21591 0.91860 1.00241 0.81274 1.22835 0.98022 0.98136 0.98553 1.22496 0.95854 1.00015 0.97935 1.22358 0.98916 0.96965 0.97944 1.22444 0.96195 0.97107 1.01166 1.22449 0.96305 0.87824 1.00896 1.21946 0.95440 0.97271 0.91190 0.92922 0.98997 0.95237 0.94987 0.90835 0.91006 0.94019 0.87559 0.91461 0.75919 0.76968 0.88819 0.91147 0.90795 0.91144 0.91265 0.91322 0.91461 0.90477 0.91001 0.94669 0.89604 0.95032 0.89548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.66 8.47 -34.44 -0.29 -14.95 16 8 H 0.06 1.77 7.13 -52.48 -0.37 1.39 16 9 C 0.19 5.23 4.72 -4.98 -0.02 5.21 16 10 N -0.54 -12.17 4.70 -235.91 -1.11 -13.28 16 11 C 0.06 1.05 5.61 -3.77 -0.02 1.02 16 12 C 0.06 0.92 5.61 -3.77 -0.02 0.90 16 13 N -0.52 -8.06 4.45 -235.91 -1.05 -9.11 16 14 C 0.04 0.43 5.45 -4.98 -0.03 0.40 16 15 C 0.51 6.55 7.47 -10.99 -0.08 6.47 16 16 O -0.44 -8.21 12.74 -18.21 -0.23 -8.45 16 17 N -0.70 -6.07 5.24 -15.78 -0.08 -6.15 16 18 C 0.69 7.78 8.50 -86.92 -0.74 7.04 16 19 O -0.53 -9.04 14.41 -18.48 -0.27 -9.31 16 20 N -0.74 -4.93 5.05 -57.59 -0.29 -5.22 16 21 C 0.16 1.08 3.23 -66.81 -0.22 0.87 16 22 C -0.14 -0.95 6.54 -25.04 -0.16 -1.11 16 23 C -0.13 -0.62 6.91 -24.70 -0.17 -0.79 16 24 C -0.12 -0.47 6.83 -25.08 -0.17 -0.64 16 25 C -0.13 -0.56 6.57 -25.62 -0.17 -0.72 16 26 C 0.05 0.94 5.26 -3.76 -0.02 0.92 16 27 C 0.07 1.51 5.43 -3.76 -0.02 1.49 16 28 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 29 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 30 H 0.03 0.84 8.03 -51.93 -0.42 0.42 16 31 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 1.31 8.07 -51.92 -0.42 0.89 16 33 H 0.07 0.84 8.07 -51.93 -0.42 0.42 16 34 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.11 0.78 8.03 -51.93 -0.42 0.37 16 36 H 0.07 0.57 8.12 -51.93 -0.42 0.14 16 37 H 0.41 1.41 8.71 -40.82 -0.36 1.06 16 38 H 0.40 1.20 8.32 -40.82 -0.34 0.86 16 39 H 0.09 0.88 7.59 -51.93 -0.39 0.49 16 40 H 0.07 0.48 8.05 -51.93 -0.42 0.06 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 47 H 0.07 0.22 7.61 -51.93 -0.40 -0.18 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.09 1.60 5.85 -51.93 -0.30 1.29 16 50 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.09 1.98 6.79 -51.93 -0.35 1.63 16 LS Contribution 400.98 15.07 6.04 6.04 Total: -1.00 -38.51 400.98 -12.31 -50.83 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -8.81 Total: -3.55 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -2.23 Total: 7.60 kcal Atomic # 7 Polarization: -58.58 SS G_CDS: -1.79 Total: -60.37 kcal Atomic # 8 Polarization: -17.26 SS G_CDS: -0.50 Total: -17.76 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.51 -12.31 -50.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611174441.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.355 kcal (2) G-P(sol) polarization free energy of solvation -38.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds