Wall clock time and date at job start Tue Mar 31 2020 21:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00022 * 2 1 4 4 O 1.20825 * 120.00139 * 0.02562 * 3 2 1 5 5 C 1.50699 * 119.99985 * 179.97438 * 3 2 1 6 6 C 1.52993 * 110.02080 * 300.70248 * 5 3 2 7 7 N 1.46504 * 109.47322 * 58.60699 * 6 5 3 8 8 C 1.34768 * 120.00351 * 179.72261 * 7 6 5 9 9 O 1.21589 * 120.00240 * 355.29992 * 8 7 6 10 10 N 1.34776 * 120.00326 * 175.29962 * 8 7 6 11 11 C 1.46926 * 120.63194 * 184.95211 * 10 8 7 12 12 C 1.52763 * 109.00812 * 233.58083 * 11 10 8 13 13 C 1.53032 * 109.38564 * 305.59202 * 12 11 10 14 14 C 1.50699 * 109.44766 * 181.25139 * 13 12 11 15 15 H 1.08003 * 120.00090 * 239.93767 * 14 13 12 16 16 C 1.37879 * 119.99821 * 59.94235 * 14 13 12 17 17 N 1.31514 * 120.00294 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99774 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47022 * 89.99729 * 18 16 14 20 20 H 1.48496 * 109.46747 * 209.99649 * 18 16 14 21 21 H 1.48497 * 109.47239 * 329.99491 * 18 16 14 22 22 C 1.53039 * 109.54002 * 61.23857 * 13 12 11 23 23 C 1.46928 * 120.62874 * 5.23584 * 10 8 7 24 24 C 1.54267 * 110.07097 * 62.12280 * 5 3 2 25 25 C 1.54891 * 104.19889 * 95.69384 * 24 5 3 26 26 C 1.54890 * 102.74580 * 37.94159 * 25 24 5 27 27 C 1.53878 * 110.03226 * 179.31009 * 5 3 2 28 28 H 1.09000 * 109.46945 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47302 * 299.99968 * 1 2 3 30 30 H 1.09001 * 109.47047 * 60.00508 * 1 2 3 31 31 H 1.08992 * 109.47077 * 298.60764 * 6 5 3 32 32 H 1.09002 * 109.47288 * 178.60414 * 6 5 3 33 33 H 0.96999 * 119.99706 * 0.02562 * 7 6 5 34 34 H 1.09000 * 109.58564 * 353.42033 * 11 10 8 35 35 H 1.09004 * 109.58305 * 113.84694 * 11 10 8 36 36 H 1.09004 * 109.56223 * 185.55455 * 12 11 10 37 37 H 1.09001 * 109.38108 * 65.52091 * 12 11 10 38 38 H 1.09004 * 109.46152 * 301.21744 * 13 12 11 39 39 H 0.96998 * 119.99805 * 180.02562 * 17 16 14 40 40 H 1.09004 * 109.49826 * 178.68011 * 22 13 12 41 41 H 1.08999 * 109.52273 * 58.60011 * 22 13 12 42 42 H 1.09006 * 109.58636 * 246.15958 * 23 10 8 43 43 H 1.08999 * 109.58431 * 6.43391 * 23 10 8 44 44 H 1.09000 * 110.48679 * 214.37273 * 24 5 3 45 45 H 1.09003 * 110.48993 * 337.01603 * 24 5 3 46 46 H 1.08996 * 110.75625 * 279.62858 * 25 24 5 47 47 H 1.09001 * 110.75779 * 156.25659 * 25 24 5 48 48 H 1.09002 * 110.48185 * 203.37698 * 26 25 24 49 49 H 1.09004 * 110.48656 * 80.73828 * 26 25 24 50 50 H 1.09004 * 110.03081 * 359.94922 * 27 5 3 51 51 H 1.08998 * 110.03375 * 121.38622 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.1273 0.5696 1.2369 7 7 3.6911 -0.8290 1.2414 8 6 4.0718 -1.6505 2.2396 9 8 4.8458 -1.2557 3.0901 10 7 3.5946 -2.9097 2.2952 11 6 3.9139 -3.7817 3.4338 12 6 4.5037 -5.0895 2.9090 13 6 3.5417 -5.7089 1.8928 14 6 4.1079 -7.0145 1.3970 15 1 4.3158 -7.1484 0.3456 16 6 4.3605 -8.0381 2.2855 17 7 4.1078 -7.8750 3.5658 18 14 5.0618 -9.6568 1.6708 19 1 6.5452 -9.5971 1.7017 20 1 4.5925 -10.7627 2.5436 21 1 4.6050 -9.8971 0.2784 22 6 3.3578 -4.7520 0.7127 23 6 2.7503 -3.4387 1.2153 24 6 4.1310 0.6257 -1.2799 25 6 4.3397 1.8159 -2.2489 26 6 4.8398 2.9395 -1.3074 27 6 4.0170 2.7460 -0.0169 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.7625 1.0668 2.1356 32 1 5.2163 0.6103 1.2157 33 1 3.1318 -1.1649 0.5236 34 1 4.6400 -3.2881 4.0797 35 1 3.0053 -3.9941 3.9974 36 1 4.6525 -5.7814 3.7380 37 1 5.4606 -4.8872 2.4277 38 1 2.5774 -5.8886 2.3683 39 1 4.2858 -8.5950 4.1909 40 1 2.6909 -5.2039 -0.0216 41 1 4.3250 -4.5524 0.2515 42 1 1.7449 -3.6225 1.5943 43 1 2.7068 -2.7176 0.3990 44 1 5.0805 0.1329 -1.0709 45 1 3.4153 -0.0837 -1.6956 46 1 3.3992 2.0984 -2.7219 47 1 5.0936 1.5760 -2.9987 48 1 4.6415 3.9187 -1.7432 49 1 5.9039 2.8204 -1.1029 50 1 3.1472 3.4029 -0.0268 51 1 4.6354 2.9575 0.8554 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611619990.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:56:11 Heat of formation + Delta-G solvation = -143.009577 kcal Electronic energy + Delta-G solvation = -31336.323666 eV Core-core repulsion = 27234.471525 eV Total energy + Delta-G solvation = -4101.852141 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.24698 -41.19557 -39.25064 -38.42670 -37.51880 -35.64985 -35.24647 -32.92440 -32.02497 -30.99165 -29.85530 -28.59448 -27.95988 -25.96844 -24.57944 -23.85294 -23.70767 -21.97898 -21.52081 -20.79299 -20.11769 -19.24320 -18.36074 -18.15086 -18.01131 -17.50424 -17.09004 -16.55796 -16.52258 -16.14662 -15.62284 -15.28606 -15.13942 -14.99140 -14.85260 -14.48482 -14.40296 -14.30233 -14.09067 -13.97725 -13.55084 -13.35768 -13.01903 -12.94289 -12.79651 -12.71744 -12.44980 -12.20532 -12.13617 -12.12632 -12.02639 -11.95915 -11.88025 -11.80866 -11.56444 -11.39780 -11.33189 -11.24864 -10.90594 -10.75538 -10.37962 -10.20762 -9.35785 -8.04615 -6.18245 1.03514 1.43020 1.44956 1.53567 1.59065 1.72475 2.16604 2.46164 2.91366 3.22130 3.32611 3.41478 3.56687 3.82200 4.11354 4.22609 4.24288 4.27899 4.30183 4.33144 4.37322 4.39688 4.52388 4.53226 4.62464 4.64556 4.65588 4.73590 4.75463 4.77407 4.89599 4.94249 5.01645 5.03039 5.14424 5.19868 5.23314 5.24516 5.26935 5.32057 5.44579 5.49288 5.51287 5.53796 5.69038 6.01825 6.09526 6.16081 6.41912 6.60230 6.93495 7.03011 7.49789 7.58365 8.98687 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018310 B = 0.002706 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.893404 B =10343.739652 C =10423.031040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.474 3.526 4 O -0.526 6.526 5 C -0.060 4.060 6 C 0.155 3.845 7 N -0.732 5.732 8 C 0.703 3.297 9 O -0.638 6.638 10 N -0.621 5.621 11 C 0.139 3.861 12 C -0.112 4.112 13 C 0.047 3.953 14 C -0.530 4.530 15 H 0.053 0.947 16 C 0.013 3.987 17 N -0.915 5.915 18 Si 0.949 3.051 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.267 1.267 22 C -0.115 4.115 23 C 0.120 3.880 24 C -0.115 4.115 25 C -0.124 4.124 26 C -0.119 4.119 27 C -0.115 4.115 28 H 0.129 0.871 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.410 0.590 34 H 0.067 0.933 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.020 0.980 38 H 0.004 0.996 39 H 0.260 0.740 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.089 0.911 48 H 0.079 0.921 49 H 0.081 0.919 50 H 0.080 0.920 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.415 20.331 -12.076 24.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.318 3.682 4 O -0.415 6.415 5 C -0.062 4.062 6 C 0.030 3.970 7 N -0.393 5.393 8 C 0.404 3.596 9 O -0.521 6.521 10 N -0.356 5.356 11 C 0.016 3.984 12 C -0.151 4.151 13 C 0.028 3.972 14 C -0.569 4.569 15 H 0.071 0.929 16 C -0.186 4.186 17 N -0.555 5.555 18 Si 0.775 3.225 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.191 1.191 22 C -0.153 4.153 23 C -0.003 4.003 24 C -0.152 4.152 25 C -0.161 4.161 26 C -0.156 4.156 27 C -0.153 4.153 28 H 0.147 0.853 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.252 0.748 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.039 0.961 38 H 0.023 0.977 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.064 0.936 42 H 0.093 0.907 43 H 0.114 0.886 44 H 0.110 0.890 45 H 0.098 0.902 46 H 0.082 0.918 47 H 0.107 0.893 48 H 0.097 0.903 49 H 0.100 0.900 50 H 0.099 0.901 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.142 20.806 -11.308 24.040 hybrid contribution -0.151 -1.330 0.026 1.339 sum -4.293 19.477 -11.281 22.914 Atomic orbital electron populations 1.23556 0.74580 1.05771 1.02495 1.86387 1.25104 1.32729 1.83443 1.23781 0.92121 0.81313 0.70975 1.90619 1.67415 1.37037 1.46441 1.21594 0.86336 1.00032 0.98206 1.21287 1.00363 0.79597 0.95741 1.45245 1.56790 1.10410 1.26890 1.15967 0.80364 0.81035 0.82189 1.90839 1.40778 1.76734 1.43724 1.47367 1.53236 1.11145 1.23896 1.21331 0.99628 0.90176 0.87264 1.21708 0.97700 0.94304 1.01361 1.18588 0.94053 0.92368 0.92173 1.21594 1.42328 0.99078 0.93861 0.92862 1.25701 0.96057 1.01685 0.95140 1.69978 1.49456 1.33455 1.02636 0.85695 0.78435 0.79861 0.78473 1.20709 1.21155 1.19104 1.21868 1.00087 0.94735 0.98657 1.21780 0.93759 0.95729 0.89007 1.22591 1.02323 0.98509 0.91807 1.22544 1.01815 0.94141 0.97601 1.22376 1.00051 0.99425 0.93751 1.22302 1.01447 0.90833 1.00735 0.85308 0.92464 0.91262 0.92308 0.89397 0.74836 0.91495 0.92184 0.90937 0.96088 0.97737 0.93128 0.90716 0.93551 0.90720 0.88571 0.88973 0.90185 0.91819 0.89277 0.90260 0.89984 0.90106 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.36 -6.71 7.86 -51.40 -0.40 -7.11 16 3 C 0.47 9.83 6.49 71.24 0.46 10.29 16 4 O -0.53 -13.22 14.96 21.97 0.33 -12.89 16 5 C -0.06 -1.04 0.63 -52.20 -0.03 -1.07 16 6 C 0.15 3.38 4.20 86.38 0.36 3.74 16 7 N -0.73 -18.79 4.77 -478.56 -2.29 -21.07 16 8 C 0.70 24.61 8.30 179.06 1.49 26.10 16 9 O -0.64 -27.10 15.77 -3.99 -0.06 -27.16 16 10 N -0.62 -21.97 2.98 -837.74 -2.50 -24.47 16 11 C 0.14 5.70 6.41 86.22 0.55 6.25 16 12 C -0.11 -5.30 5.14 30.53 0.16 -5.15 16 13 C 0.05 2.21 2.07 -11.52 -0.02 2.18 16 14 C -0.53 -28.12 8.56 25.60 0.22 -27.90 16 15 H 0.05 2.76 7.74 -2.91 -0.02 2.74 16 16 C 0.01 0.69 5.30 84.66 0.45 1.14 16 17 N -0.92 -51.77 11.30 21.45 0.24 -51.53 16 18 Si 0.95 42.86 29.54 68.60 2.03 44.88 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 C -0.12 -4.21 5.30 30.67 0.16 -4.05 16 23 C 0.12 3.54 6.39 86.36 0.55 4.09 16 24 C -0.11 -1.61 5.35 31.67 0.17 -1.44 16 25 C -0.12 -1.41 6.91 31.89 0.22 -1.19 16 26 C -0.12 -1.32 6.83 31.67 0.22 -1.10 16 27 C -0.12 -1.72 6.05 31.32 0.19 -1.53 16 28 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 30 H 0.07 0.90 8.13 -2.39 -0.02 0.88 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 32 H 0.09 1.90 8.12 -2.39 -0.02 1.88 16 33 H 0.41 9.04 3.59 -92.71 -0.33 8.71 16 34 H 0.07 2.86 6.99 -2.39 -0.02 2.84 16 35 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 36 H 0.07 3.89 6.03 -2.38 -0.01 3.88 16 37 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.00 0.23 8.14 -2.38 -0.02 0.21 16 39 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 40 H 0.07 2.51 8.14 -2.38 -0.02 2.49 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 43 H 0.10 2.18 5.64 -2.39 -0.01 2.17 16 44 H 0.09 1.29 7.84 -2.39 -0.02 1.27 16 45 H 0.08 1.09 7.64 -2.39 -0.02 1.07 16 46 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 50 H 0.08 1.45 6.40 -2.38 -0.02 1.44 16 51 H 0.09 1.18 7.67 -2.39 -0.02 1.16 16 Total: -1.00 -68.76 392.93 4.28 -64.48 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: 0.59 Total: 22.89 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 6.34 Total: 11.98 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -4.54 Total: -97.07 kcal Atomic # 8 Polarization: -47.03 SS G_CDS: -0.14 Total: -47.17 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -68.76 4.28 -64.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611619990.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.525 kcal (2) G-P(sol) polarization free energy of solvation -68.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds