Wall clock time and date at job start Tue Mar 31 2020 20:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45209 * 109.46996 * 2 1 4 4 C 1.34232 * 116.99861 * 179.97438 * 3 2 1 5 5 O 1.20827 * 120.00163 * 359.97438 * 4 3 2 6 6 C 1.50693 * 119.99899 * 179.97438 * 4 3 2 7 7 C 1.53000 * 110.85958 * 179.97438 * 6 4 3 8 8 C 1.53005 * 109.46638 * 59.29876 * 7 6 4 9 9 C 1.53000 * 109.47309 * 179.29824 * 7 6 4 10 10 C 1.54624 * 110.97230 * 303.79217 * 6 4 3 11 11 C 1.51284 * 104.19985 * 142.91255 * 10 6 4 12 12 O 1.21283 * 124.94133 * 163.78174 * 11 10 6 13 13 N 1.34419 * 110.11463 * 343.75242 * 11 10 6 14 14 C 1.46500 * 124.34993 * 179.58948 * 13 11 10 15 15 N 1.46492 * 109.47287 * 89.96688 * 14 13 11 16 16 C 1.36940 * 119.99589 * 90.00391 * 15 14 13 17 17 H 1.08005 * 119.99922 * 217.92374 * 16 15 14 18 18 C 1.38807 * 120.00530 * 37.92376 * 16 15 14 19 19 N 1.31623 * 119.99544 * 20.64481 * 18 16 15 20 20 Si 1.86797 * 120.00477 * 200.64264 * 18 16 15 21 21 H 1.48495 * 109.47303 * 59.99870 * 20 18 16 22 22 H 1.48501 * 109.47347 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46723 * 299.99882 * 20 18 16 24 24 C 1.46502 * 120.00316 * 270.00237 * 15 14 13 25 25 C 1.52996 * 117.49884 * 194.12060 * 24 15 14 26 26 C 1.52995 * 60.00137 * 252.50945 * 25 24 15 27 27 C 1.46828 * 111.31448 * 359.61649 * 13 11 10 28 28 H 1.09002 * 109.46929 * 60.00220 * 1 2 3 29 29 H 1.09004 * 109.46983 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47218 * 299.99992 * 1 2 3 31 31 H 1.09004 * 109.47441 * 119.99815 * 2 1 3 32 32 H 1.08998 * 109.47218 * 240.00008 * 2 1 3 33 33 H 1.09003 * 109.46970 * 299.30234 * 7 6 4 34 34 H 1.09003 * 109.47147 * 60.00467 * 8 7 6 35 35 H 1.09003 * 109.46619 * 179.97438 * 8 7 6 36 36 H 1.08996 * 109.46894 * 300.00019 * 8 7 6 37 37 H 1.09006 * 109.46861 * 60.00288 * 9 7 6 38 38 H 1.08994 * 109.46650 * 179.97438 * 9 7 6 39 39 H 1.08993 * 109.47272 * 300.00157 * 9 7 6 40 40 H 1.09003 * 110.49009 * 261.59799 * 10 6 4 41 41 H 1.09005 * 110.48874 * 24.10346 * 10 6 4 42 42 H 1.08993 * 109.46810 * 209.97593 * 14 13 11 43 43 H 1.09005 * 109.46448 * 329.97122 * 14 13 11 44 44 H 0.97004 * 120.00196 * 174.95401 * 19 18 16 45 45 H 1.08994 * 115.54968 * 339.82585 * 24 15 14 46 46 H 1.09001 * 117.50126 * 359.97438 * 25 24 15 47 47 H 1.09000 * 117.50398 * 145.01962 * 25 24 15 48 48 H 1.08999 * 117.49631 * 252.51433 * 26 25 24 49 49 H 1.09004 * 117.50059 * 107.48965 * 26 25 24 50 50 H 1.08992 * 110.23544 * 257.98540 * 27 13 11 51 51 H 1.08999 * 110.27544 * 135.97339 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 6 5.4501 2.8944 0.0014 8 6 5.9402 2.1429 -1.2380 9 6 6.0005 4.3219 -0.0169 10 6 3.3907 3.7551 -1.2006 11 6 3.2167 5.1532 -0.6496 12 8 3.0877 6.1540 -1.3225 13 7 3.2250 5.1248 0.6942 14 6 3.0879 6.3082 1.5469 15 7 1.6706 6.5404 1.8356 16 6 1.0924 5.9639 2.9350 17 1 0.0804 5.5906 2.8797 18 6 1.8069 5.8592 4.1204 19 7 2.8439 6.6409 4.3349 20 14 1.2966 4.6092 5.4113 21 1 1.3621 3.2438 4.8313 22 1 2.2140 4.6974 6.5758 23 1 -0.0924 4.8931 5.8534 24 6 0.8717 7.3894 0.9483 25 6 -0.4890 7.8644 1.4615 26 6 -0.4140 6.7947 0.3703 27 6 3.3900 3.7556 1.1981 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 5.7983 2.3821 0.8983 34 1 5.5919 2.6552 -2.1349 35 1 7.0298 2.1127 -1.2372 36 1 5.5480 1.1260 -1.2249 37 1 5.6512 4.8572 0.8661 38 1 7.0900 4.2911 -0.0154 39 1 5.6522 4.8341 -0.9137 40 1 4.1166 3.7531 -2.0138 41 1 2.4356 3.3559 -1.5423 42 1 3.6274 6.1479 2.4803 43 1 3.5009 7.1761 1.0328 44 1 3.2985 6.6195 5.1916 45 1 1.4383 8.0733 0.3164 46 1 -0.7902 7.5450 2.4592 47 1 -0.8180 8.8612 1.1675 48 1 -0.6934 7.0877 -0.6417 49 1 -0.6655 5.7717 0.6502 50 1 2.4312 3.3584 1.5311 51 1 4.1107 3.7382 2.0156 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795412852.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:27 Heat of formation + Delta-G solvation = -69.667170 kcal Electronic energy + Delta-G solvation = -32595.762733 eV Core-core repulsion = 28497.090957 eV Total energy + Delta-G solvation = -4098.671775 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.32730 -39.60061 -37.26053 -36.87006 -36.18663 -34.43150 -33.15488 -31.96707 -31.05819 -29.63019 -27.75802 -27.09909 -25.68859 -24.06283 -23.32624 -22.85345 -21.59974 -21.33238 -19.93279 -19.21270 -19.00003 -17.56008 -16.91121 -16.79252 -16.46437 -15.74101 -15.55424 -15.10971 -14.63558 -14.41024 -14.36627 -14.24183 -13.83152 -13.61388 -13.44189 -13.06241 -12.91798 -12.73445 -12.48020 -12.24273 -12.04704 -12.01863 -11.89251 -11.68649 -11.67151 -11.59178 -11.29163 -11.27275 -10.92553 -10.90548 -10.65654 -10.63405 -10.59137 -10.56214 -10.43264 -10.14754 -10.06307 -9.69494 -9.34432 -9.18211 -8.59775 -8.00805 -6.70647 -6.05413 -3.58313 2.11809 2.56655 3.19581 3.24300 3.30097 3.31946 3.85331 4.29813 4.40779 4.42733 4.58164 4.81465 4.82790 4.88076 4.95424 5.04956 5.14327 5.21589 5.24479 5.26465 5.42201 5.46005 5.60870 5.68166 5.74064 5.75685 5.79018 5.86127 5.90723 5.96845 5.97569 6.06262 6.11619 6.14014 6.21826 6.27387 6.33222 6.42101 6.45526 6.52539 6.55683 6.66063 6.94492 7.00524 7.17725 7.47092 7.67359 7.74614 7.91782 8.34660 8.88133 8.96892 9.57611 10.16648 10.99603 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009268 B = 0.005144 C = 0.004667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3020.537921 B = 5442.390215 C = 5998.498637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.349 6.349 4 C 0.484 3.516 5 O -0.502 6.502 6 C -0.066 4.066 7 C -0.066 4.066 8 C -0.160 4.160 9 C -0.152 4.152 10 C -0.146 4.146 11 C 0.522 3.478 12 O -0.544 6.544 13 N -0.601 5.601 14 C 0.360 3.640 15 N -0.539 5.539 16 C -0.263 4.263 17 H 0.063 0.937 18 C 0.021 3.979 19 N -0.890 5.890 20 Si 0.899 3.101 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.279 1.279 24 C 0.128 3.872 25 C -0.194 4.194 26 C -0.220 4.220 27 C 0.124 3.876 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.121 0.879 43 H 0.059 0.941 44 H 0.261 0.739 45 H 0.092 0.908 46 H 0.098 0.902 47 H 0.074 0.926 48 H 0.072 0.928 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.110 -10.507 -7.991 13.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.265 6.265 4 C 0.327 3.673 5 O -0.390 6.390 6 C -0.068 4.068 7 C -0.084 4.084 8 C -0.217 4.217 9 C -0.209 4.209 10 C -0.187 4.187 11 C 0.308 3.692 12 O -0.422 6.422 13 N -0.338 5.338 14 C 0.154 3.846 15 N -0.256 5.256 16 C -0.393 4.393 17 H 0.080 0.920 18 C -0.180 4.180 19 N -0.531 5.531 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.214 1.214 23 H -0.205 1.205 24 C 0.019 3.981 25 C -0.233 4.233 26 C -0.260 4.260 27 C -0.001 4.001 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.138 0.862 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.110 0.890 46 H 0.116 0.884 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.099 0.901 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.401 -10.194 -8.067 13.220 hybrid contribution -0.514 -1.009 0.797 1.384 sum 1.887 -11.203 -7.270 13.488 Atomic orbital electron populations 1.21811 0.92549 1.02762 1.03982 1.23031 0.95546 0.80168 1.02373 1.86567 1.24198 1.32230 1.83525 1.23189 0.80587 0.91665 0.71867 1.90582 1.60194 1.42928 1.45313 1.21628 0.96916 0.88909 0.99344 1.20928 0.89611 0.97566 1.00313 1.22109 1.01142 1.01736 0.96697 1.21981 1.00594 0.95084 1.03262 1.22602 1.03679 0.95125 0.97266 1.20420 0.75855 0.89499 0.83467 1.90663 1.51791 1.36793 1.62990 1.50247 1.69107 1.08244 1.06247 1.21326 0.86153 0.83390 0.93736 1.43947 1.06957 1.50450 1.24243 1.18920 0.99598 1.32523 0.88254 0.91970 1.25214 0.98036 0.97841 0.96928 1.69828 1.22934 1.36726 1.23642 0.86429 0.78281 0.81771 0.80764 1.20555 1.21367 1.20495 1.21185 0.86027 0.95191 0.95702 1.23071 1.04000 0.97068 0.99134 1.23248 1.08266 0.98142 0.96354 1.21970 1.01575 0.82817 0.93704 0.91402 0.90384 0.91108 0.91219 0.91368 0.89939 0.92897 0.92482 0.90510 0.91232 0.92273 0.92330 0.87925 0.87755 0.86212 0.92326 0.92833 0.89030 0.88367 0.90785 0.90956 0.89949 0.90112 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 37.16 0.38 -1.04 16 2 C 0.06 0.70 6.19 37.16 0.23 0.93 16 3 O -0.35 -4.93 9.36 -39.26 -0.37 -5.30 16 4 C 0.48 7.00 6.41 36.00 0.23 7.23 16 5 O -0.50 -7.68 13.57 -18.75 -0.25 -7.93 16 6 C -0.07 -0.94 0.59 -154.03 -0.09 -1.03 16 7 C -0.07 -0.84 1.92 -90.62 -0.17 -1.01 16 8 C -0.16 -1.85 8.71 37.16 0.32 -1.53 16 9 C -0.15 -1.98 7.89 37.16 0.29 -1.68 16 10 C -0.15 -2.15 5.27 -26.74 -0.14 -2.30 16 11 C 0.52 9.72 6.25 -10.86 -0.07 9.66 16 12 O -0.54 -11.87 17.60 5.56 0.10 -11.78 16 13 N -0.60 -11.38 2.23 -176.08 -0.39 -11.78 16 14 C 0.36 7.93 6.12 -63.76 -0.39 7.54 16 15 N -0.54 -12.71 3.02 -169.36 -0.51 -13.23 16 16 C -0.26 -6.60 8.04 -15.06 -0.12 -6.72 16 17 H 0.06 1.61 7.22 -52.48 -0.38 1.23 16 18 C 0.02 0.52 4.97 -17.43 -0.09 0.43 16 19 N -0.89 -23.18 11.44 55.49 0.63 -22.55 16 20 Si 0.90 19.99 29.60 -169.99 -5.03 14.96 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 C 0.13 2.83 6.62 -67.93 -0.45 2.38 16 25 C -0.19 -3.95 9.81 -26.74 -0.26 -4.21 16 26 C -0.22 -4.44 10.08 -26.73 -0.27 -4.71 16 27 C 0.12 2.10 5.70 -3.09 -0.02 2.08 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 32 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.58 6.39 -51.93 -0.33 0.25 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.08 0.98 5.58 -51.93 -0.29 0.69 16 37 H 0.07 1.01 6.46 -51.93 -0.34 0.68 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.81 6.14 -51.93 -0.32 0.49 16 40 H 0.10 1.35 5.73 -51.93 -0.30 1.05 16 41 H 0.10 1.50 7.57 -51.93 -0.39 1.11 16 42 H 0.12 2.84 5.51 -51.93 -0.29 2.56 16 43 H 0.06 1.32 7.83 -51.93 -0.41 0.92 16 44 H 0.26 6.63 8.32 -40.82 -0.34 6.29 16 45 H 0.09 2.02 8.10 -51.93 -0.42 1.60 16 46 H 0.10 2.16 6.96 -51.93 -0.36 1.80 16 47 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 48 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 49 H 0.08 1.75 7.99 -51.93 -0.42 1.34 16 50 H 0.08 1.49 7.55 -51.93 -0.39 1.10 16 51 H 0.08 1.35 7.62 -51.93 -0.40 0.95 16 LS Contribution 399.36 15.07 6.02 6.02 Total: -1.00 -28.26 399.36 -8.80 -37.06 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -8.38 Total: 8.50 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -0.61 Total: 6.01 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: -0.27 Total: -47.55 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.52 Total: -25.00 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.03 Total: 14.96 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -28.26 -8.80 -37.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795412852.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.603 kcal (2) G-P(sol) polarization free energy of solvation -28.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds