Wall clock time and date at job start Tue Mar 31 2020 21:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 113.99781 * 2 1 4 4 C 1.53002 * 109.46967 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47150 * 66.51051 * 4 3 2 6 6 C 1.36933 * 120.00121 * 263.62478 * 5 4 3 7 7 H 1.07999 * 120.00366 * 145.96353 * 6 5 4 8 8 C 1.38818 * 120.00123 * 325.96995 * 6 5 4 9 9 N 1.31611 * 120.00035 * 156.60911 * 8 6 5 10 10 Si 1.86805 * 119.99623 * 336.61482 * 8 6 5 11 11 H 1.48498 * 109.47163 * 91.05474 * 10 8 6 12 12 H 1.48506 * 109.46479 * 211.05291 * 10 8 6 13 13 H 1.48494 * 109.47366 * 331.05122 * 10 8 6 14 14 C 1.46498 * 119.99775 * 83.63029 * 5 4 3 15 15 N 1.46499 * 109.47314 * 94.61061 * 14 5 4 16 16 C 1.35248 * 130.86120 * 265.14922 * 15 14 5 17 17 O 1.21284 * 135.73389 * 359.97438 * 16 15 14 18 18 C 1.50344 * 88.53495 * 180.02562 * 16 15 14 19 19 C 1.53209 * 120.77708 * 126.25589 * 18 16 15 20 20 C 1.53893 * 86.98479 * 99.86333 * 19 18 16 21 21 C 1.53396 * 120.78925 * 233.65854 * 18 16 15 22 22 C 1.46897 * 130.86212 * 85.15337 * 15 14 5 23 23 H 1.08999 * 114.16886 * 293.63917 * 22 15 14 24 24 C 1.53001 * 114.17380 * 66.35120 * 22 15 14 25 25 H 1.08997 * 110.33080 * 40.09994 * 24 22 15 26 26 C 1.54476 * 110.37357 * 277.85104 * 24 22 15 27 27 C 1.54512 * 104.06310 * 217.19268 * 26 24 22 28 28 C 1.54473 * 104.06205 * 359.97438 * 27 26 24 29 29 O 1.44420 * 110.37117 * 162.46854 * 24 22 15 30 30 H 1.09003 * 109.47117 * 60.00222 * 1 2 3 31 31 H 1.08996 * 109.47428 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47596 * 299.99926 * 1 2 3 33 33 H 1.09004 * 109.47404 * 59.99861 * 3 2 1 34 34 H 1.08996 * 109.47299 * 299.99832 * 3 2 1 35 35 H 1.09005 * 109.47019 * 306.50592 * 4 3 2 36 36 H 1.08999 * 109.47282 * 186.51241 * 4 3 2 37 37 H 0.97005 * 120.00271 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.47229 * 334.60222 * 14 5 4 39 39 H 1.09003 * 109.46964 * 214.60920 * 14 5 4 40 40 H 1.08992 * 113.64601 * 345.32360 * 19 18 16 41 41 H 1.08998 * 113.64681 * 214.40207 * 19 18 16 42 42 H 1.09003 * 113.59262 * 139.51919 * 20 19 18 43 43 H 1.09004 * 113.59202 * 270.26501 * 20 19 18 44 44 H 1.08995 * 113.56458 * 145.64752 * 21 18 16 45 45 H 1.09007 * 113.78200 * 14.68321 * 21 18 16 46 46 H 1.09009 * 110.50834 * 335.83228 * 26 24 22 47 47 H 1.08998 * 110.51471 * 98.40444 * 26 24 22 48 48 H 1.08997 * 110.51397 * 118.64152 * 27 26 24 49 49 H 1.08997 * 110.50527 * 241.35475 * 27 26 24 50 50 H 1.08997 * 110.37541 * 142.81103 * 28 27 26 51 51 H 1.09002 * 110.37739 * 265.03928 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9792 0.5971 -1.2658 6 6 4.2263 -0.7473 -1.3475 7 1 4.0156 -1.2805 -2.2628 8 6 4.7475 -1.4250 -0.2538 9 7 4.5663 -2.7233 -0.1367 10 14 5.7058 -0.4940 1.0517 11 1 4.7772 -0.0401 2.1180 12 1 6.7365 -1.3869 1.6399 13 1 6.3657 0.6848 0.4351 14 6 4.1589 1.4478 -2.4448 15 7 5.5610 1.8619 -2.5392 16 6 6.1843 2.9808 -2.1047 17 8 5.8508 3.9889 -1.5186 18 6 7.4692 2.4354 -2.6634 19 6 8.3125 3.2614 -3.6401 20 6 9.2040 3.6218 -2.4386 21 6 8.7200 2.3162 -1.7834 22 6 6.7235 1.1900 -3.1350 23 1 7.0186 0.2729 -2.6253 24 6 6.6504 1.0427 -4.6562 25 1 6.2374 1.9462 -5.1047 26 6 5.7953 -0.1860 -5.0371 27 6 6.5135 -0.7752 -6.2718 28 6 7.7172 0.1678 -6.4912 29 8 7.9598 0.7632 -5.1977 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8490 0.5466 0.8270 36 1 3.9781 2.1738 0.1172 37 1 4.9309 -3.1970 0.6273 38 1 3.5246 2.3299 -2.3565 39 1 3.8836 0.8906 -3.3403 40 1 7.7819 4.1148 -4.0622 41 1 8.8191 2.6613 -4.3959 42 1 10.2690 3.6246 -2.6709 43 1 8.8837 4.5207 -1.9118 44 1 9.3396 1.4517 -2.0216 45 1 8.5176 2.4113 -0.7165 46 1 5.7818 -0.9095 -4.2218 47 1 4.7805 0.1191 -5.2923 48 1 6.8550 -1.7898 -6.0670 49 1 5.8544 -0.7609 -7.1398 50 1 8.5891 -0.3994 -6.8169 51 1 7.4693 0.9354 -7.2243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840151792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:29 Heat of formation + Delta-G solvation = -32.037968 kcal Electronic energy + Delta-G solvation = -32431.902790 eV Core-core repulsion = 28334.862739 eV Total energy + Delta-G solvation = -4097.040051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.26689 -38.91534 -37.51101 -36.79867 -36.08494 -34.84107 -31.93340 -31.68195 -30.02380 -29.31057 -27.52877 -25.74864 -25.58017 -24.66983 -23.95086 -22.85767 -21.77911 -21.32596 -20.85856 -19.63387 -17.58886 -16.97365 -16.63721 -16.34562 -16.10383 -15.87581 -15.72401 -15.37050 -15.13033 -14.84558 -14.43479 -14.40002 -14.17232 -13.76092 -13.70905 -13.43629 -12.96876 -12.71598 -12.48053 -12.37385 -12.15630 -11.96006 -11.68896 -11.66520 -11.56312 -11.34607 -11.22835 -11.17129 -10.97423 -10.86842 -10.69367 -10.52159 -10.40829 -10.14593 -9.91184 -9.80181 -9.70257 -9.59701 -9.20007 -8.96785 -8.66117 -8.23510 -7.10241 -5.99169 -3.38758 2.89368 3.25152 3.33310 3.47415 3.53124 4.15445 4.37549 4.49313 4.53110 4.54220 4.78192 4.82884 4.86698 4.91196 4.98871 5.02407 5.02705 5.27179 5.39486 5.40264 5.47809 5.59916 5.65917 5.67004 5.71571 5.72736 5.76159 5.86403 5.89431 5.92499 5.95610 5.97807 6.03733 6.04470 6.08922 6.11253 6.12198 6.24421 6.28537 6.33904 6.38733 6.43519 6.54641 6.67673 6.86142 7.13414 7.23566 7.85412 8.01217 8.31206 8.78933 8.88636 9.68491 10.00951 11.15818 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.004899 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.735334 B = 5714.438491 C = 6329.257851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.352 6.352 3 C 0.051 3.949 4 C 0.123 3.877 5 N -0.582 5.582 6 C -0.260 4.260 7 H 0.081 0.919 8 C 0.048 3.952 9 N -0.891 5.891 10 Si 0.868 3.132 11 H -0.286 1.286 12 H -0.302 1.302 13 H -0.268 1.268 14 C 0.347 3.653 15 N -0.609 5.609 16 C 0.550 3.450 17 O -0.518 6.518 18 C -0.153 4.153 19 C -0.107 4.107 20 C -0.138 4.138 21 C -0.107 4.107 22 C 0.160 3.840 23 H 0.111 0.889 24 C 0.086 3.914 25 H 0.069 0.931 26 C -0.149 4.149 27 C -0.154 4.154 28 C 0.046 3.954 29 O -0.363 6.363 30 H 0.030 0.970 31 H 0.079 0.921 32 H 0.027 0.973 33 H 0.032 0.968 34 H 0.037 0.963 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.262 0.738 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.092 0.908 45 H 0.068 0.932 46 H 0.093 0.907 47 H 0.075 0.925 48 H 0.076 0.924 49 H 0.072 0.928 50 H 0.089 0.911 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.487 7.724 -10.502 13.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.270 6.270 3 C -0.029 4.029 4 C -0.003 4.003 5 N -0.304 5.304 6 C -0.388 4.388 7 H 0.099 0.901 8 C -0.153 4.153 9 N -0.531 5.531 10 Si 0.699 3.301 11 H -0.215 1.215 12 H -0.230 1.230 13 H -0.193 1.193 14 C 0.141 3.859 15 N -0.349 5.349 16 C 0.336 3.664 17 O -0.393 6.393 18 C -0.157 4.157 19 C -0.145 4.145 20 C -0.176 4.176 21 C -0.146 4.146 22 C 0.055 3.945 23 H 0.128 0.872 24 C 0.027 3.973 25 H 0.087 0.913 26 C -0.187 4.187 27 C -0.192 4.192 28 C -0.031 4.031 29 O -0.281 6.281 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.123 0.877 42 H 0.087 0.913 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.087 0.913 46 H 0.111 0.889 47 H 0.093 0.907 48 H 0.094 0.906 49 H 0.090 0.910 50 H 0.107 0.893 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.400 7.879 -9.988 13.168 hybrid contribution -0.115 0.415 0.863 0.965 sum 3.285 8.294 -9.125 12.761 Atomic orbital electron populations 1.22645 0.83568 1.01907 0.98440 1.88257 1.17144 1.26704 1.94860 1.23179 0.96855 0.84921 0.97903 1.21450 0.90547 0.97514 0.90744 1.44749 1.73407 1.05525 1.06734 1.18599 1.37736 0.80911 1.01564 0.90110 1.25251 0.97764 0.94795 0.97528 1.69868 1.44885 1.08088 1.30242 0.87186 0.80470 0.80056 0.82409 1.21460 1.23042 1.19306 1.21362 0.80069 0.92964 0.91506 1.52520 1.09811 1.18092 1.54475 1.20913 0.86427 0.82018 0.77090 1.90669 1.78724 1.26848 1.43095 1.24042 0.95406 0.96376 0.99842 1.22682 0.96677 0.98798 0.96326 1.22825 0.99377 0.97893 0.97491 1.22608 0.94480 0.98559 0.98914 1.21912 0.83917 0.97123 0.91514 0.87163 1.22939 0.83645 0.97536 0.93172 0.91303 1.23005 0.99080 0.97923 0.98702 1.22924 0.97316 1.00410 0.98504 1.23379 0.98376 0.95169 0.86213 1.89090 1.26129 1.81390 1.31537 0.95137 0.90273 0.95462 0.95019 0.94443 0.90978 0.92702 0.92811 0.91772 0.90737 0.91719 0.87746 0.91298 0.90137 0.88919 0.91290 0.88868 0.90660 0.90556 0.90955 0.89303 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.63 16 2 O -0.35 -7.65 10.55 -35.23 -0.37 -8.02 16 3 C 0.05 0.99 6.27 37.16 0.23 1.22 16 4 C 0.12 2.74 4.65 -4.04 -0.02 2.72 16 5 N -0.58 -13.16 2.35 -176.95 -0.42 -13.57 16 6 C -0.26 -6.76 9.85 -15.06 -0.15 -6.91 16 7 H 0.08 2.25 8.06 -52.49 -0.42 1.82 16 8 C 0.05 1.34 5.27 -17.43 -0.09 1.25 16 9 N -0.89 -26.45 13.97 55.49 0.78 -25.67 16 10 Si 0.87 22.29 25.13 -169.99 -4.27 18.02 16 11 H -0.29 -7.35 6.45 56.52 0.36 -6.98 16 12 H -0.30 -7.90 7.11 56.52 0.40 -7.50 16 13 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.35 6.59 7.18 -63.75 -0.46 6.14 16 15 N -0.61 -11.23 3.27 -207.15 -0.68 -11.91 16 16 C 0.55 10.63 9.46 -10.95 -0.10 10.53 16 17 O -0.52 -11.35 18.03 5.55 0.10 -11.25 16 18 C -0.15 -2.46 1.23 -157.25 -0.19 -2.65 16 19 C -0.11 -1.41 6.92 -26.16 -0.18 -1.59 16 20 C -0.14 -1.77 8.08 -25.80 -0.21 -1.98 16 21 C -0.11 -1.61 7.80 -26.06 -0.20 -1.82 16 22 C 0.16 2.65 4.05 -67.90 -0.27 2.38 16 23 H 0.11 2.09 8.11 -51.93 -0.42 1.67 16 24 C 0.09 1.18 2.67 -25.96 -0.07 1.11 16 25 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 26 C -0.15 -2.00 6.16 -25.16 -0.16 -2.15 16 27 C -0.15 -1.65 7.09 -25.16 -0.18 -1.83 16 28 C 0.05 0.47 7.63 37.93 0.29 0.76 16 29 O -0.36 -4.78 9.46 -35.23 -0.33 -5.11 16 30 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 1.80 3.08 -51.93 -0.16 1.64 16 36 H 0.05 1.18 8.12 -51.93 -0.42 0.76 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.06 1.15 8.03 -51.93 -0.42 0.74 16 39 H 0.07 1.32 7.23 -51.93 -0.38 0.95 16 40 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.10 1.31 6.29 -51.93 -0.33 0.98 16 42 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 44 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.09 1.51 7.85 -51.92 -0.41 1.10 16 47 H 0.07 0.96 7.78 -51.93 -0.40 0.55 16 48 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 403.71 15.07 6.08 6.08 Total: -1.00 -31.88 403.71 -8.63 -40.51 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -8.87 Total: 2.13 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -0.65 Total: 8.79 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.32 Total: -51.15 kcal Atomic # 8 Polarization: -23.78 SS G_CDS: -0.60 Total: -24.38 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.27 Total: 18.02 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.88 -8.63 -40.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840151792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.472 kcal (2) G-P(sol) polarization free energy of solvation -31.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds