Wall clock time and date at job start Tue Mar 31 2020 21:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 113.99781 * 2 1 4 4 C 1.53002 * 109.46967 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47150 * 66.51051 * 4 3 2 6 6 C 1.36933 * 120.00121 * 263.62478 * 5 4 3 7 7 H 1.07999 * 120.00366 * 145.96353 * 6 5 4 8 8 C 1.38818 * 120.00123 * 325.96995 * 6 5 4 9 9 N 1.31611 * 120.00035 * 156.60911 * 8 6 5 10 10 Si 1.86805 * 119.99623 * 336.61482 * 8 6 5 11 11 H 1.48498 * 109.47163 * 91.05474 * 10 8 6 12 12 H 1.48506 * 109.46479 * 211.05291 * 10 8 6 13 13 H 1.48494 * 109.47366 * 331.05122 * 10 8 6 14 14 C 1.46498 * 119.99775 * 83.63029 * 5 4 3 15 15 N 1.46499 * 109.47314 * 94.61061 * 14 5 4 16 16 C 1.35248 * 130.86120 * 265.14922 * 15 14 5 17 17 O 1.21284 * 135.73389 * 359.97438 * 16 15 14 18 18 C 1.50344 * 88.53495 * 180.02562 * 16 15 14 19 19 C 1.53209 * 120.77708 * 126.25589 * 18 16 15 20 20 C 1.53893 * 86.98479 * 99.86333 * 19 18 16 21 21 C 1.53396 * 120.78925 * 233.65854 * 18 16 15 22 22 C 1.46897 * 130.86212 * 85.15337 * 15 14 5 23 23 H 1.08999 * 114.16886 * 293.63917 * 22 15 14 24 24 C 1.53001 * 114.17380 * 66.35120 * 22 15 14 25 25 H 1.08997 * 110.33080 * 40.09994 * 24 22 15 26 26 C 1.54476 * 110.37357 * 277.85104 * 24 22 15 27 27 C 1.54512 * 104.06310 * 217.19268 * 26 24 22 28 28 C 1.54473 * 104.06205 * 359.97438 * 27 26 24 29 29 O 1.44420 * 110.37117 * 162.46854 * 24 22 15 30 30 H 1.09003 * 109.47117 * 60.00222 * 1 2 3 31 31 H 1.08996 * 109.47428 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47596 * 299.99926 * 1 2 3 33 33 H 1.09004 * 109.47404 * 59.99861 * 3 2 1 34 34 H 1.08996 * 109.47299 * 299.99832 * 3 2 1 35 35 H 1.09005 * 109.47019 * 306.50592 * 4 3 2 36 36 H 1.08999 * 109.47282 * 186.51241 * 4 3 2 37 37 H 0.97005 * 120.00271 * 179.97438 * 9 8 6 38 38 H 1.09000 * 109.47229 * 334.60222 * 14 5 4 39 39 H 1.09003 * 109.46964 * 214.60920 * 14 5 4 40 40 H 1.08992 * 113.64601 * 345.32360 * 19 18 16 41 41 H 1.08998 * 113.64681 * 214.40207 * 19 18 16 42 42 H 1.09003 * 113.59262 * 139.51919 * 20 19 18 43 43 H 1.09004 * 113.59202 * 270.26501 * 20 19 18 44 44 H 1.08995 * 113.56458 * 145.64752 * 21 18 16 45 45 H 1.09007 * 113.78200 * 14.68321 * 21 18 16 46 46 H 1.09009 * 110.50834 * 335.83228 * 26 24 22 47 47 H 1.08998 * 110.51471 * 98.40444 * 26 24 22 48 48 H 1.08997 * 110.51397 * 118.64152 * 27 26 24 49 49 H 1.08997 * 110.50527 * 241.35475 * 27 26 24 50 50 H 1.08997 * 110.37541 * 142.81103 * 28 27 26 51 51 H 1.09002 * 110.37739 * 265.03928 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9792 0.5971 -1.2658 6 6 4.2263 -0.7473 -1.3475 7 1 4.0156 -1.2805 -2.2628 8 6 4.7475 -1.4250 -0.2538 9 7 4.5663 -2.7233 -0.1367 10 14 5.7058 -0.4940 1.0517 11 1 4.7772 -0.0401 2.1180 12 1 6.7365 -1.3869 1.6399 13 1 6.3657 0.6848 0.4351 14 6 4.1589 1.4478 -2.4448 15 7 5.5610 1.8619 -2.5392 16 6 6.1843 2.9808 -2.1047 17 8 5.8508 3.9889 -1.5186 18 6 7.4692 2.4354 -2.6634 19 6 8.3125 3.2614 -3.6401 20 6 9.2040 3.6218 -2.4386 21 6 8.7200 2.3162 -1.7834 22 6 6.7235 1.1900 -3.1350 23 1 7.0186 0.2729 -2.6253 24 6 6.6504 1.0427 -4.6562 25 1 6.2374 1.9462 -5.1047 26 6 5.7953 -0.1860 -5.0371 27 6 6.5135 -0.7752 -6.2718 28 6 7.7172 0.1678 -6.4912 29 8 7.9598 0.7632 -5.1977 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8899 35 1 3.8490 0.5466 0.8270 36 1 3.9781 2.1738 0.1172 37 1 4.9309 -3.1970 0.6273 38 1 3.5246 2.3299 -2.3565 39 1 3.8836 0.8906 -3.3403 40 1 7.7819 4.1148 -4.0622 41 1 8.8191 2.6613 -4.3959 42 1 10.2690 3.6246 -2.6709 43 1 8.8837 4.5207 -1.9118 44 1 9.3396 1.4517 -2.0216 45 1 8.5176 2.4113 -0.7165 46 1 5.7818 -0.9095 -4.2218 47 1 4.7805 0.1191 -5.2923 48 1 6.8550 -1.7898 -6.0670 49 1 5.8544 -0.7609 -7.1398 50 1 8.5891 -0.3994 -6.8169 51 1 7.4693 0.9354 -7.2243 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000840151792.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:45:28 Heat of formation + Delta-G solvation = -52.492564 kcal Electronic energy + Delta-G solvation = -32432.789768 eV Core-core repulsion = 28334.862739 eV Total energy + Delta-G solvation = -4097.927029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.61732 -39.96351 -39.11332 -38.21314 -37.66978 -36.42789 -33.74013 -32.92244 -31.40712 -30.65415 -29.13648 -27.18058 -26.72167 -26.12851 -25.29728 -24.45769 -22.96079 -22.80617 -21.94233 -21.08865 -19.05564 -18.78829 -18.07978 -17.72539 -17.55100 -17.28053 -17.04339 -16.83367 -16.46277 -16.22108 -15.89584 -15.77256 -15.55037 -15.30367 -15.01189 -14.75343 -14.56789 -14.36519 -14.06855 -13.72854 -13.57828 -13.29917 -13.20651 -13.09638 -12.81108 -12.76419 -12.56620 -12.38175 -12.32949 -12.19225 -12.09327 -12.03442 -11.80246 -11.57503 -11.50691 -11.30093 -11.06811 -10.78511 -10.65636 -10.62457 -10.45131 -9.85794 -9.02571 -8.16646 -5.50529 1.21209 1.32843 1.36704 1.42609 1.92361 2.39633 2.96640 3.00679 3.02871 3.09761 3.32773 3.43524 3.61823 3.70734 3.78274 3.88271 4.01890 4.06169 4.13593 4.21562 4.28519 4.29864 4.33973 4.41974 4.44325 4.50312 4.52801 4.56715 4.60857 4.64434 4.75820 4.77518 4.85742 4.87384 4.91520 4.93953 4.94931 5.04486 5.07899 5.12132 5.19223 5.20321 5.27039 5.46868 5.58572 5.66777 5.92656 5.97601 6.16844 6.48768 6.88720 7.27183 7.60211 7.98520 9.02660 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010860 B = 0.004899 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2577.735334 B = 5714.438491 C = 6329.257851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.398 6.398 3 C 0.056 3.944 4 C 0.120 3.880 5 N -0.594 5.594 6 C -0.223 4.223 7 H 0.058 0.942 8 C 0.001 3.999 9 N -0.936 5.936 10 Si 0.919 3.081 11 H -0.288 1.288 12 H -0.311 1.311 13 H -0.273 1.273 14 C 0.349 3.651 15 N -0.613 5.613 16 C 0.540 3.460 17 O -0.548 6.548 18 C -0.155 4.155 19 C -0.090 4.090 20 C -0.126 4.126 21 C -0.115 4.115 22 C 0.161 3.839 23 H 0.080 0.920 24 C 0.098 3.902 25 H 0.083 0.917 26 C -0.151 4.151 27 C -0.149 4.149 28 C 0.044 3.956 29 O -0.375 6.375 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.059 0.941 37 H 0.258 0.742 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.104 0.896 45 H 0.046 0.954 46 H 0.055 0.945 47 H 0.081 0.919 48 H 0.070 0.930 49 H 0.094 0.906 50 H 0.106 0.894 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.952 9.708 -12.736 16.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.317 6.317 3 C -0.022 4.022 4 C -0.005 4.005 5 N -0.317 5.317 6 C -0.353 4.353 7 H 0.076 0.924 8 C -0.196 4.196 9 N -0.581 5.581 10 Si 0.751 3.249 11 H -0.216 1.216 12 H -0.240 1.240 13 H -0.198 1.198 14 C 0.143 3.857 15 N -0.351 5.351 16 C 0.327 3.673 17 O -0.425 6.425 18 C -0.159 4.159 19 C -0.128 4.128 20 C -0.163 4.163 21 C -0.153 4.153 22 C 0.057 3.943 23 H 0.098 0.902 24 C 0.040 3.960 25 H 0.101 0.899 26 C -0.189 4.189 27 C -0.187 4.187 28 C -0.032 4.032 29 O -0.294 6.294 30 H 0.067 0.933 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.137 0.863 42 H 0.116 0.884 43 H 0.092 0.908 44 H 0.123 0.877 45 H 0.065 0.935 46 H 0.073 0.927 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.112 0.888 50 H 0.124 0.876 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.874 9.899 -12.247 16.216 hybrid contribution -0.331 -0.170 1.481 1.527 sum 3.543 9.729 -10.766 14.937 Atomic orbital electron populations 1.22827 0.80865 1.02804 1.00325 1.88174 1.20263 1.28015 1.95275 1.23064 0.94573 0.84709 0.99900 1.21423 0.92947 0.96754 0.89426 1.44797 1.74308 1.04763 1.07876 1.18445 1.34512 0.82397 0.99908 0.92417 1.25622 0.99499 0.95111 0.99382 1.69958 1.47500 1.09352 1.31250 0.86367 0.79145 0.78533 0.80881 1.21626 1.24035 1.19766 1.21380 0.80668 0.93223 0.90458 1.52346 1.09920 1.18247 1.54605 1.21421 0.87778 0.81598 0.76518 1.90639 1.79608 1.28030 1.44272 1.24029 0.94681 0.95933 1.01225 1.22669 0.95693 0.98353 0.96093 1.22775 1.01064 0.96039 0.96453 1.22725 0.94364 1.00678 0.97563 1.21903 0.82902 0.96010 0.93444 0.90247 1.22738 0.84332 0.98082 0.90879 0.89903 1.22951 0.99930 0.97192 0.98811 1.22919 0.97785 1.00112 0.97849 1.23608 0.98771 0.95647 0.85212 1.89065 1.25485 1.81733 1.33086 0.93331 0.90018 0.93327 0.92657 0.92580 0.93872 0.92285 0.93292 0.90223 0.89529 0.91042 0.86324 0.88423 0.90831 0.87714 0.93520 0.92653 0.90058 0.91147 0.88752 0.87563 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 11.01 113.37 1.25 2.12 16 2 O -0.40 -17.05 10.55 -148.98 -1.57 -18.63 16 3 C 0.06 2.12 6.27 71.98 0.45 2.57 16 4 C 0.12 5.32 4.65 86.38 0.40 5.72 16 5 N -0.59 -26.99 2.35 -713.74 -1.68 -28.67 16 6 C -0.22 -11.92 9.85 84.04 0.83 -11.09 16 7 H 0.06 3.34 8.06 -2.91 -0.02 3.31 16 8 C 0.00 0.04 5.27 84.86 0.45 0.49 16 9 N -0.94 -57.85 13.97 21.65 0.30 -57.54 16 10 Si 0.92 48.12 25.13 68.60 1.72 49.84 16 11 H -0.29 -14.95 6.45 99.48 0.64 -14.31 16 12 H -0.31 -16.55 7.11 99.48 0.71 -15.84 16 13 H -0.27 -14.18 7.11 99.48 0.71 -13.47 16 14 C 0.35 13.02 7.18 170.96 1.23 14.25 16 15 N -0.61 -22.35 3.27 -927.42 -3.03 -25.38 16 16 C 0.54 20.55 9.46 87.47 0.83 21.38 16 17 O -0.55 -23.76 18.03 -3.04 -0.05 -23.82 16 18 C -0.16 -4.82 1.23 -52.42 -0.06 -4.88 16 19 C -0.09 -2.13 6.92 30.97 0.21 -1.91 16 20 C -0.13 -2.91 8.08 31.19 0.25 -2.65 16 21 C -0.12 -3.34 7.80 31.03 0.24 -3.10 16 22 C 0.16 5.30 4.05 44.79 0.18 5.48 16 23 H 0.08 3.11 8.11 -2.39 -0.02 3.09 16 24 C 0.10 2.54 2.67 31.10 0.08 2.62 16 25 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 26 C -0.15 -3.92 6.16 31.61 0.19 -3.73 16 27 C -0.15 -2.88 7.09 31.61 0.22 -2.66 16 28 C 0.04 0.75 7.63 72.48 0.55 1.30 16 29 O -0.38 -8.90 9.46 -148.98 -1.41 -10.31 16 30 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.04 2.18 3.08 -2.38 -0.01 2.17 16 36 H 0.06 2.53 8.12 -2.39 -0.02 2.51 16 37 H 0.26 15.43 8.31 -92.70 -0.77 14.65 16 38 H 0.08 2.74 8.03 -2.39 -0.02 2.72 16 39 H 0.09 3.01 7.23 -2.39 -0.02 2.99 16 40 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.12 2.53 6.29 -2.39 -0.02 2.51 16 42 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 44 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 45 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 46 H 0.05 1.86 7.85 -2.38 -0.02 1.84 16 47 H 0.08 1.97 7.78 -2.39 -0.02 1.95 16 48 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 49 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 51 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -71.63 403.71 2.43 -69.20 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.83 Total: 19.40 kcal Atomic # 6 Polarization: 18.59 SS G_CDS: 7.31 Total: 25.90 kcal Atomic # 7 Polarization: -107.19 SS G_CDS: -4.40 Total: -111.60 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -3.04 Total: -52.75 kcal Atomic # 14 Polarization: 48.12 SS G_CDS: 1.72 Total: 49.84 kcal Total: -71.63 2.43 -69.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840151792.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.711 kcal (2) G-P(sol) polarization free energy of solvation -71.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds