Wall clock time and date at job start Tue Mar 31 2020 21:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35902 * 116.99518 * 2 1 4 4 C 1.38733 * 120.05390 * 179.97438 * 3 2 1 5 5 C 1.38143 * 119.94296 * 179.97438 * 4 3 2 6 6 C 1.38262 * 120.05792 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.94478 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46747 * 339.99411 * 7 6 5 9 9 O 1.42900 * 109.46755 * 219.99969 * 7 6 5 10 10 C 1.52997 * 109.47423 * 100.00088 * 7 6 5 11 11 N 1.46896 * 109.47173 * 184.99970 * 10 7 6 12 12 C 1.46895 * 111.00108 * 179.97438 * 11 10 7 13 13 C 1.53006 * 109.47221 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47002 * 304.99874 * 13 12 11 15 15 O 1.42895 * 109.47000 * 64.99905 * 13 12 11 16 16 C 1.52997 * 109.47127 * 185.00300 * 13 12 11 17 17 N 1.46896 * 109.47114 * 179.97438 * 16 13 12 18 18 C 1.46896 * 111.00256 * 293.95380 * 17 16 13 19 19 C 1.46909 * 111.00113 * 169.99735 * 17 16 13 20 20 C 1.50695 * 109.47163 * 190.00161 * 19 17 16 21 21 H 1.08001 * 119.99957 * 0.02562 * 20 19 17 22 22 C 1.37878 * 119.99878 * 180.02562 * 20 19 17 23 23 N 1.31508 * 119.99861 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99883 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46893 * 89.99762 * 24 22 20 26 26 H 1.48499 * 109.46839 * 209.99781 * 24 22 20 27 27 H 1.48501 * 109.46931 * 330.00044 * 24 22 20 28 28 C 1.38263 * 120.11384 * 0.26805 * 6 5 4 29 29 C 1.38147 * 120.05154 * 359.46113 * 28 6 5 30 30 H 1.08995 * 109.46574 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46769 * 299.99864 * 1 2 3 32 32 H 1.08998 * 109.46948 * 60.00287 * 1 2 3 33 33 H 1.07998 * 120.02886 * 359.95840 * 4 3 2 34 34 H 1.08004 * 119.96976 * 180.02562 * 5 4 3 35 35 H 0.96699 * 113.99995 * 299.99562 * 9 7 6 36 36 H 1.09001 * 109.47436 * 64.99389 * 10 7 6 37 37 H 1.09003 * 109.46829 * 304.99628 * 10 7 6 38 38 H 1.00910 * 111.00029 * 56.04119 * 11 10 7 39 39 H 1.08997 * 109.47158 * 59.99752 * 12 11 10 40 40 H 1.09004 * 109.47713 * 299.99926 * 12 11 10 41 41 H 0.96696 * 113.99976 * 60.00990 * 15 13 12 42 42 H 1.09001 * 109.47289 * 299.99953 * 16 13 12 43 43 H 1.09004 * 109.47261 * 59.99697 * 16 13 12 44 44 H 1.08999 * 109.47174 * 60.00032 * 18 17 16 45 45 H 1.08998 * 109.47389 * 179.97438 * 18 17 16 46 46 H 1.09008 * 109.47155 * 299.99883 * 18 17 16 47 47 H 1.08999 * 109.46856 * 310.00530 * 19 17 16 48 48 H 1.09001 * 109.46406 * 70.00169 * 19 17 16 49 49 H 0.97000 * 119.99813 * 180.02562 * 23 22 20 50 50 H 1.07998 * 119.97558 * 179.69948 * 28 6 5 51 51 H 1.08002 * 120.03358 * 180.27323 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5171 0.0000 6 6 3.3018 3.6759 -0.0005 7 6 3.9859 5.0187 -0.0017 8 1 5.0114 4.9043 0.3496 9 8 3.2828 5.9122 0.8640 10 6 3.9938 5.5859 -1.4226 11 7 4.7640 6.8366 -1.4464 12 6 4.7938 7.4109 -2.7981 13 6 5.6036 8.7090 -2.7830 14 1 5.1930 9.3846 -2.0326 15 8 6.9660 8.4167 -2.4663 16 6 5.5308 9.3715 -4.1601 17 7 6.3078 10.6181 -4.1454 18 6 5.6974 11.6084 -3.2485 19 6 6.4597 11.1599 -5.5025 20 6 7.4570 12.2894 -5.4837 21 1 7.9310 12.5760 -4.5566 22 6 7.7643 12.9571 -6.6502 23 7 7.1868 12.6085 -7.7791 24 14 9.0001 14.3578 -6.6269 25 1 10.3629 13.8196 -6.8683 26 1 8.6588 15.3367 -7.6902 27 1 8.9608 15.0305 -5.3035 28 6 1.9210 3.6049 0.0051 29 6 1.2915 2.3752 0.0000 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 4.0209 0.3801 0.0016 34 1 5.1345 2.5752 0.0000 35 1 2.3614 6.0612 0.6111 36 1 2.9701 5.7835 -1.7407 37 1 4.4516 4.8644 -2.0993 38 1 5.6986 6.6924 -1.0944 39 1 3.7758 7.6211 -3.1260 40 1 5.2573 6.7019 -3.4841 41 1 7.3962 7.8195 -3.0934 42 1 5.9413 8.6959 -4.9105 43 1 4.4915 9.5944 -4.4016 44 1 5.6609 11.2075 -2.2356 45 1 6.2928 12.5214 -3.2561 46 1 4.6857 11.8312 -3.5878 47 1 6.8132 10.3740 -6.1699 48 1 5.4973 11.5306 -5.8554 49 1 7.4033 13.0780 -8.5998 50 1 1.3341 4.5115 0.0095 51 1 0.2129 2.3201 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843066284.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:00 Heat of formation + Delta-G solvation = -105.196535 kcal Electronic energy + Delta-G solvation = -28368.477382 eV Core-core repulsion = 24268.264937 eV Total energy + Delta-G solvation = -4100.212444 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.71288 -39.03508 -38.20653 -36.83478 -35.73294 -34.62230 -32.50480 -31.58777 -31.54981 -29.99265 -28.26949 -27.41501 -26.85417 -25.44571 -23.78958 -23.15405 -22.54729 -21.54525 -21.08590 -20.12982 -18.75289 -17.43607 -16.99536 -16.61999 -16.27213 -16.21905 -16.03411 -15.41168 -15.30916 -15.00418 -14.84923 -14.75416 -14.26796 -14.13564 -14.00083 -13.68904 -13.52188 -13.34469 -13.24151 -12.84891 -12.51107 -12.45990 -12.41081 -11.94491 -11.85084 -11.77559 -11.34057 -11.31051 -11.17372 -11.09623 -10.86330 -10.72298 -10.61988 -10.42166 -10.25370 -9.97203 -9.58990 -9.47098 -9.10354 -8.57467 -8.53982 -8.41680 -7.16765 -6.01107 -4.01914 0.87112 0.90992 2.77834 3.22959 3.34305 3.39821 3.44300 3.78883 4.19920 4.25800 4.38905 4.42649 4.51415 4.55696 4.63419 4.66778 4.73467 4.79508 4.90730 4.94823 4.96206 5.03378 5.15876 5.22101 5.31478 5.33773 5.37160 5.47089 5.54030 5.60722 5.67725 5.75406 5.78260 5.86664 6.09188 6.14961 6.24724 6.26190 6.35792 6.43984 6.80832 6.82310 6.89141 7.22303 7.29309 7.35180 7.40894 7.82466 7.98786 8.12556 8.23305 8.58011 9.06359 9.62324 11.09899 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.030673 B = 0.001489 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.634772 B =18796.006434 C =19014.680209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.126 3.874 4 C -0.149 4.149 5 C -0.069 4.069 6 C -0.152 4.152 7 C 0.157 3.843 8 H 0.106 0.894 9 O -0.541 6.541 10 C 0.032 3.968 11 N -0.676 5.676 12 C 0.028 3.972 13 C 0.114 3.886 14 H 0.104 0.896 15 O -0.546 6.546 16 C 0.025 3.975 17 N -0.529 5.529 18 C 0.037 3.963 19 C 0.192 3.808 20 C -0.505 4.505 21 H 0.064 0.936 22 C 0.054 3.946 23 N -0.901 5.901 24 Si 0.899 3.101 25 H -0.280 1.280 26 H -0.288 1.288 27 H -0.273 1.273 28 C -0.069 4.069 29 C -0.205 4.205 30 H 0.100 0.900 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.371 0.629 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.349 0.651 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.367 0.633 42 H 0.067 0.933 43 H 0.028 0.972 44 H 0.048 0.952 45 H 0.074 0.926 46 H 0.008 0.992 47 H 0.027 0.973 48 H -0.011 1.011 49 H 0.261 0.739 50 H 0.124 0.876 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.239 -25.568 16.020 33.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.081 3.919 4 C -0.168 4.168 5 C -0.087 4.087 6 C -0.153 4.153 7 C 0.097 3.903 8 H 0.123 0.877 9 O -0.346 6.346 10 C -0.098 4.098 11 N -0.308 5.308 12 C -0.102 4.102 13 C 0.054 3.946 14 H 0.122 0.878 15 O -0.349 6.349 16 C -0.105 4.105 17 N -0.253 5.253 18 C -0.112 4.112 19 C 0.067 3.933 20 C -0.543 4.543 21 H 0.082 0.918 22 C -0.147 4.147 23 N -0.541 5.541 24 Si 0.727 3.273 25 H -0.206 1.206 26 H -0.214 1.214 27 H -0.198 1.198 28 C -0.088 4.088 29 C -0.224 4.224 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.218 0.782 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.168 0.832 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.213 0.787 42 H 0.086 0.914 43 H 0.046 0.954 44 H 0.067 0.933 45 H 0.093 0.907 46 H 0.026 0.974 47 H 0.045 0.955 48 H 0.007 0.993 49 H 0.070 0.930 50 H 0.142 0.858 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -13.779 -25.003 17.011 33.232 hybrid contribution -0.441 -0.043 -1.906 1.957 sum -14.220 -25.046 15.105 32.522 Atomic orbital electron populations 1.23078 0.78201 1.04092 1.01467 1.86079 1.21554 1.26933 1.88631 1.19082 0.92436 0.84202 0.96220 1.20441 0.91412 0.98722 1.06218 1.20837 0.99983 0.90848 0.97004 1.20484 0.94211 0.96147 1.04467 1.20701 0.95926 0.84098 0.89590 0.87672 1.86668 1.28059 1.66263 1.53597 1.22671 0.99733 0.91108 0.96263 1.60313 1.20872 1.26625 1.22991 1.22704 1.01381 0.96889 0.89201 1.21975 0.81853 0.93539 0.97209 0.87831 1.86604 1.24688 1.70127 1.53491 1.22702 0.96404 0.94913 0.96465 1.62013 1.47238 1.02993 1.13056 1.22249 0.96433 0.96958 0.95549 1.19746 0.95663 0.94972 0.82907 1.21181 1.23426 1.15253 0.94490 0.91762 1.24994 0.96606 0.97662 0.95432 1.69960 1.43316 1.41845 0.98959 0.86483 0.81410 0.81778 0.77652 1.20632 1.21376 1.19816 1.20673 0.93840 0.97175 0.97067 1.21208 1.00114 0.92234 1.08796 0.88133 0.92541 0.92537 0.85004 0.85050 0.78203 0.90773 0.94395 0.83200 0.90488 0.95069 0.78739 0.91413 0.95368 0.93308 0.90739 0.97376 0.95461 0.99323 0.92993 0.85769 0.85326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.52 10.50 -19.43 -0.20 -2.73 16 3 C 0.13 1.04 6.69 -39.21 -0.26 0.78 16 4 C -0.15 -1.18 9.99 -39.43 -0.39 -1.58 16 5 C -0.07 -0.51 9.66 -39.61 -0.38 -0.89 16 6 C -0.15 -1.18 4.98 -104.60 -0.52 -1.70 16 7 C 0.16 1.28 3.38 -27.88 -0.09 1.18 16 8 H 0.11 0.86 8.00 -51.93 -0.42 0.44 16 9 O -0.54 -5.15 13.13 -35.23 -0.46 -5.61 16 10 C 0.03 0.27 5.30 -3.83 -0.02 0.25 16 11 N -0.68 -7.16 6.45 -113.78 -0.73 -7.90 16 12 C 0.03 0.32 5.36 -3.82 -0.02 0.30 16 13 C 0.11 1.65 3.08 -26.73 -0.08 1.56 16 14 H 0.10 1.63 6.55 -51.93 -0.34 1.29 16 15 O -0.55 -8.29 12.72 -35.23 -0.45 -8.74 16 16 C 0.03 0.44 4.62 -3.83 -0.02 0.42 16 17 N -0.53 -11.58 4.62 -244.37 -1.13 -12.71 16 18 C 0.04 0.74 9.14 60.06 0.55 1.29 16 19 C 0.19 5.08 4.72 -4.97 -0.02 5.05 16 20 C -0.50 -14.43 8.46 -34.44 -0.29 -14.72 16 21 H 0.06 1.83 7.12 -52.49 -0.37 1.46 16 22 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 23 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 24 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 28 C -0.07 -0.49 9.32 -39.61 -0.37 -0.86 16 29 C -0.20 -1.47 9.04 -39.43 -0.36 -1.82 16 30 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 32 H 0.06 0.19 7.66 -51.93 -0.40 -0.20 16 33 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.13 0.74 8.03 -52.48 -0.42 0.32 16 35 H 0.37 2.40 7.49 45.56 0.34 2.74 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.35 3.76 8.29 -39.29 -0.33 3.43 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.37 4.52 9.04 45.56 0.41 4.93 16 42 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 43 H 0.03 0.49 8.12 -51.93 -0.42 0.06 16 44 H 0.05 0.88 6.47 -51.93 -0.34 0.54 16 45 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 46 H 0.01 0.15 8.14 -51.92 -0.42 -0.27 16 47 H 0.03 0.76 7.93 -51.93 -0.41 0.35 16 48 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 49 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.12 0.63 6.77 -52.49 -0.36 0.28 16 51 H 0.13 0.66 6.30 -52.49 -0.33 0.33 16 LS Contribution 414.05 15.07 6.24 6.24 Total: -1.00 -34.01 414.05 -9.47 -43.48 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -7.05 Total: 5.50 kcal Atomic # 6 Polarization: -6.79 SS G_CDS: -1.39 Total: -8.18 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -1.13 Total: -46.86 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -1.11 Total: -17.08 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.01 -9.47 -43.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843066284.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.721 kcal (2) G-P(sol) polarization free energy of solvation -34.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds