Wall clock time and date at job start Tue Mar 31 2020 21:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99503 * 2 1 4 4 C 1.38738 * 120.05216 * 179.97438 * 3 2 1 5 5 C 1.38138 * 119.94724 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.05052 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.93895 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47345 * 25.00291 * 7 6 5 9 9 O 1.42903 * 109.46442 * 145.00221 * 7 6 5 10 10 C 1.53001 * 109.47316 * 264.99984 * 7 6 5 11 11 N 1.46898 * 109.46893 * 180.02562 * 10 7 6 12 12 C 1.46900 * 110.99589 * 180.02562 * 11 10 7 13 13 C 1.53002 * 109.46922 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.47038 * 59.99939 * 13 12 11 15 15 O 1.42898 * 109.47239 * 299.99855 * 13 12 11 16 16 C 1.53002 * 109.47097 * 179.97438 * 13 12 11 17 17 N 1.46900 * 109.47264 * 185.00189 * 16 13 12 18 18 C 1.46900 * 110.99958 * 66.04197 * 17 16 13 19 19 C 1.46897 * 111.00270 * 190.00200 * 17 16 13 20 20 C 1.50698 * 109.47526 * 170.00161 * 19 17 16 21 21 H 1.07997 * 119.99591 * 359.97438 * 20 19 17 22 22 C 1.37878 * 120.00120 * 180.02562 * 20 19 17 23 23 N 1.31512 * 119.99753 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99907 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46955 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47532 * 119.99388 * 24 22 20 27 27 H 1.48500 * 109.46849 * 239.99437 * 24 22 20 28 28 C 1.38265 * 120.11421 * 0.27647 * 6 5 4 29 29 C 1.38143 * 120.05439 * 359.44953 * 28 6 5 30 30 H 1.09007 * 109.47091 * 59.99726 * 1 2 3 31 31 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47505 * 300.00144 * 1 2 3 33 33 H 1.08002 * 120.02449 * 359.95907 * 4 3 2 34 34 H 1.07993 * 119.97736 * 180.02562 * 5 4 3 35 35 H 0.96700 * 114.00311 * 60.00230 * 9 7 6 36 36 H 1.08999 * 109.47164 * 300.00418 * 10 7 6 37 37 H 1.08997 * 109.47124 * 60.00119 * 10 7 6 38 38 H 1.00904 * 110.99845 * 303.94958 * 11 10 7 39 39 H 1.09002 * 109.47169 * 299.99734 * 12 11 10 40 40 H 1.09003 * 109.47314 * 59.99718 * 12 11 10 41 41 H 0.96703 * 114.00039 * 299.99884 * 15 13 12 42 42 H 1.08998 * 109.47036 * 305.00166 * 16 13 12 43 43 H 1.09001 * 109.47344 * 64.99949 * 16 13 12 44 44 H 1.09001 * 109.46747 * 60.00636 * 18 17 16 45 45 H 1.09005 * 109.47098 * 179.97438 * 18 17 16 46 46 H 1.08992 * 109.47196 * 300.00137 * 18 17 16 47 47 H 1.09001 * 109.46751 * 289.99946 * 19 17 16 48 48 H 1.09004 * 109.47138 * 49.99393 * 19 17 16 49 49 H 0.97002 * 119.99578 * 180.02562 * 23 22 20 50 50 H 1.08003 * 119.96829 * 179.70554 * 28 6 5 51 51 H 1.08002 * 120.02755 * 180.27532 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4312 1.2849 0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0016 8 1 4.9813 4.9192 -0.4347 9 8 3.2197 5.9435 -0.7759 10 6 4.1038 5.5310 1.4352 11 7 4.7702 6.8401 1.4351 12 6 4.9016 7.3640 2.8012 13 6 5.5992 8.7251 2.7604 14 1 5.0091 9.4181 2.1607 15 8 6.8966 8.5783 2.1798 16 6 5.7355 9.2711 4.1832 17 7 6.2958 10.6283 4.1354 18 6 5.3616 11.5610 3.4910 19 6 6.6620 11.0943 5.4794 20 6 7.4510 12.3736 5.3699 21 1 7.6599 12.7977 4.3989 22 6 7.9072 13.0020 6.5093 23 7 7.6532 12.4851 7.6916 24 14 8.8858 14.5873 6.3734 25 1 9.0343 14.9563 4.9426 26 1 8.1725 15.6726 7.0934 27 1 10.2290 14.3930 6.9761 28 6 1.9209 3.6048 0.0031 29 6 1.2914 2.3751 -0.0021 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 4.0208 0.3800 0.0016 34 1 5.1344 2.5751 0.0000 35 1 2.3207 6.0814 -0.4474 36 1 3.1085 5.6303 1.8683 37 1 4.6882 4.8255 2.0258 38 1 5.6693 6.7881 0.9800 39 1 3.9120 7.4757 3.2443 40 1 5.4921 6.6713 3.4008 41 1 7.4775 7.9743 2.6624 42 1 4.7543 9.2996 4.6570 43 1 6.3982 8.6246 4.7586 44 1 4.4286 11.5877 4.0541 45 1 5.8010 12.5583 3.4692 46 1 5.1617 11.2293 2.4722 47 1 5.7576 11.2739 6.0606 48 1 7.2675 10.3352 5.9748 49 1 7.9738 12.9274 8.4932 50 1 1.3341 4.5115 0.0066 51 1 0.2128 2.3202 -0.0029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843066286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:07 Heat of formation + Delta-G solvation = -104.672806 kcal Electronic energy + Delta-G solvation = -28376.010206 eV Core-core repulsion = 24275.820472 eV Total energy + Delta-G solvation = -4100.189734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.71093 -39.03713 -38.21717 -36.82920 -35.74602 -34.60665 -32.51265 -31.60379 -31.52556 -29.99390 -28.26546 -27.42136 -26.86554 -25.47367 -23.76952 -23.11952 -22.56760 -21.53347 -21.08299 -20.14888 -18.75731 -17.41738 -17.00883 -16.62861 -16.26854 -16.21619 -16.04883 -15.41460 -15.34212 -14.98783 -14.83109 -14.73943 -14.29913 -14.14480 -14.00291 -13.70985 -13.53666 -13.32585 -13.21828 -12.83532 -12.50602 -12.45990 -12.40572 -11.95532 -11.84303 -11.76874 -11.33569 -11.31538 -11.15925 -11.09113 -10.86256 -10.73867 -10.64862 -10.42296 -10.24903 -9.98623 -9.59336 -9.46777 -9.09213 -8.56936 -8.52564 -8.42573 -7.17275 -6.01499 -4.02208 0.87369 0.91524 2.78125 3.23171 3.32659 3.39924 3.45901 3.78606 4.19762 4.26641 4.39520 4.42640 4.50993 4.56574 4.63602 4.67510 4.74422 4.79435 4.90720 4.94526 4.95534 5.03145 5.15378 5.21661 5.31607 5.34103 5.37176 5.47380 5.53701 5.60809 5.68054 5.74349 5.77874 5.87209 6.07822 6.15036 6.23012 6.26473 6.35488 6.43879 6.80507 6.81318 6.89471 7.23487 7.28891 7.34481 7.42088 7.82482 7.97458 8.11828 8.22684 8.57504 9.06374 9.62107 11.09567 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.031565 B = 0.001486 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.850675 B =18834.890759 C =19028.949747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.125 3.875 4 C -0.149 4.149 5 C -0.069 4.069 6 C -0.152 4.152 7 C 0.156 3.844 8 H 0.105 0.895 9 O -0.540 6.540 10 C 0.032 3.968 11 N -0.675 5.675 12 C 0.028 3.972 13 C 0.114 3.886 14 H 0.105 0.895 15 O -0.545 6.545 16 C 0.025 3.975 17 N -0.530 5.530 18 C 0.036 3.964 19 C 0.192 3.808 20 C -0.504 4.504 21 H 0.065 0.935 22 C 0.054 3.946 23 N -0.901 5.901 24 Si 0.898 3.102 25 H -0.271 1.271 26 H -0.285 1.285 27 H -0.284 1.284 28 C -0.069 4.069 29 C -0.205 4.205 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.371 0.629 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.349 0.651 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.366 0.634 42 H 0.028 0.972 43 H 0.068 0.932 44 H 0.008 0.992 45 H 0.074 0.926 46 H 0.048 0.952 47 H -0.011 1.011 48 H 0.028 0.972 49 H 0.260 0.740 50 H 0.125 0.875 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.711 -25.656 -15.613 33.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.080 3.920 4 C -0.168 4.168 5 C -0.088 4.088 6 C -0.153 4.153 7 C 0.097 3.903 8 H 0.123 0.877 9 O -0.345 6.345 10 C -0.098 4.098 11 N -0.307 5.307 12 C -0.102 4.102 13 C 0.054 3.946 14 H 0.122 0.878 15 O -0.349 6.349 16 C -0.104 4.104 17 N -0.254 5.254 18 C -0.113 4.113 19 C 0.067 3.933 20 C -0.543 4.543 21 H 0.083 0.917 22 C -0.147 4.147 23 N -0.541 5.541 24 Si 0.726 3.274 25 H -0.196 1.196 26 H -0.212 1.212 27 H -0.210 1.210 28 C -0.087 4.087 29 C -0.223 4.223 30 H 0.075 0.925 31 H 0.119 0.881 32 H 0.075 0.925 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.219 0.781 36 H 0.092 0.908 37 H 0.056 0.944 38 H 0.169 0.831 39 H 0.095 0.905 40 H 0.049 0.951 41 H 0.211 0.789 42 H 0.046 0.954 43 H 0.086 0.914 44 H 0.027 0.973 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.007 0.993 48 H 0.046 0.954 49 H 0.070 0.930 50 H 0.143 0.857 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.443 -25.017 -16.608 33.321 hybrid contribution -0.211 -0.145 1.941 1.958 sum -14.654 -25.162 -14.667 32.603 Atomic orbital electron populations 1.23078 0.78208 1.04085 1.01468 1.86075 1.21549 1.26938 1.88639 1.19079 0.92435 0.84201 0.96264 1.20437 0.91410 0.98712 1.06222 1.20820 0.99965 0.90857 0.97120 1.20489 0.94231 0.96126 1.04423 1.20695 0.94931 0.83833 0.90887 0.87711 1.86663 1.28928 1.63983 1.54929 1.22668 1.00299 0.90523 0.96342 1.60278 1.28258 1.24547 1.17606 1.22699 1.01140 0.96998 0.89389 1.21994 0.84096 0.93962 0.94503 0.87763 1.86623 1.24474 1.69369 1.54411 1.22711 0.98140 0.93904 0.95686 1.62020 1.39719 0.99460 1.24173 1.22263 0.93604 0.98360 0.97048 1.19750 0.94895 0.95986 0.82684 1.21221 1.33163 1.06989 0.92901 0.91701 1.24997 0.96501 0.97984 0.95243 1.69972 1.46754 1.39872 0.97482 0.86433 0.79677 0.83066 0.78213 1.19576 1.21159 1.21039 1.20672 0.93850 0.97178 0.97037 1.21206 1.00115 0.92230 1.08778 0.92549 0.88137 0.92535 0.85017 0.85079 0.78150 0.90808 0.94408 0.83128 0.90494 0.95128 0.78858 0.95391 0.91371 0.97347 0.90693 0.93308 0.99319 0.95432 0.93046 0.85727 0.85328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.81 101.05 0.99 1.10 16 2 O -0.32 -2.53 10.50 -19.43 -0.20 -2.73 16 3 C 0.13 1.04 6.69 -39.22 -0.26 0.77 16 4 C -0.15 -1.18 9.99 -39.43 -0.39 -1.57 16 5 C -0.07 -0.52 9.67 -39.61 -0.38 -0.90 16 6 C -0.15 -1.17 5.00 -104.60 -0.52 -1.70 16 7 C 0.16 1.27 3.41 -27.88 -0.10 1.18 16 8 H 0.11 0.85 8.05 -51.93 -0.42 0.43 16 9 O -0.54 -5.15 13.00 -35.23 -0.46 -5.61 16 10 C 0.03 0.27 5.33 -3.82 -0.02 0.25 16 11 N -0.67 -7.14 6.37 -113.78 -0.72 -7.86 16 12 C 0.03 0.32 5.39 -3.82 -0.02 0.30 16 13 C 0.11 1.65 3.19 -26.73 -0.09 1.56 16 14 H 0.10 1.65 6.33 -51.93 -0.33 1.32 16 15 O -0.55 -8.26 12.62 -35.23 -0.44 -8.70 16 16 C 0.03 0.44 4.60 -3.82 -0.02 0.42 16 17 N -0.53 -11.60 4.70 -244.37 -1.15 -12.75 16 18 C 0.04 0.72 9.14 60.06 0.55 1.27 16 19 C 0.19 5.07 4.72 -4.98 -0.02 5.05 16 20 C -0.50 -14.41 8.46 -34.44 -0.29 -14.70 16 21 H 0.06 1.85 7.12 -52.49 -0.37 1.48 16 22 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 23 N -0.90 -26.99 13.29 55.43 0.74 -26.26 16 24 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 25 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 C -0.07 -0.50 9.32 -39.61 -0.37 -0.87 16 29 C -0.20 -1.47 9.04 -39.44 -0.36 -1.83 16 30 H 0.06 0.19 7.66 -51.92 -0.40 -0.21 16 31 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.06 0.19 7.67 -51.93 -0.40 -0.20 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.37 2.46 7.39 45.56 0.34 2.79 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.35 3.77 8.12 -39.29 -0.32 3.45 16 39 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.37 4.42 9.05 45.56 0.41 4.83 16 42 H 0.03 0.48 8.12 -51.93 -0.42 0.06 16 43 H 0.07 1.17 7.93 -51.93 -0.41 0.75 16 44 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 45 H 0.07 1.63 6.76 -51.93 -0.35 1.28 16 46 H 0.05 0.87 6.37 -51.93 -0.33 0.54 16 47 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 48 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16 49 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 50 H 0.12 0.65 6.62 -52.48 -0.35 0.30 16 51 H 0.13 0.67 6.30 -52.49 -0.33 0.34 16 LS Contribution 413.38 15.07 6.23 6.23 Total: -1.00 -34.07 413.38 -9.46 -43.54 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.03 Total: 5.48 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.40 Total: -8.22 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -1.14 Total: -46.87 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -1.11 Total: -17.04 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.07 -9.46 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843066286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.136 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds