Wall clock time and date at job start Tue Mar 31 2020 21:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35902 * 116.99503 * 2 1 4 4 C 1.38738 * 120.05216 * 179.97438 * 3 2 1 5 5 C 1.38138 * 119.94724 * 179.97438 * 4 3 2 6 6 C 1.38270 * 120.05052 * 359.97438 * 5 4 3 7 7 C 1.50707 * 119.93895 * 179.97438 * 6 5 4 8 8 H 1.08999 * 109.47345 * 25.00291 * 7 6 5 9 9 O 1.42903 * 109.46442 * 145.00221 * 7 6 5 10 10 C 1.53001 * 109.47316 * 264.99984 * 7 6 5 11 11 N 1.46898 * 109.46893 * 180.02562 * 10 7 6 12 12 C 1.46900 * 110.99589 * 180.02562 * 11 10 7 13 13 C 1.53002 * 109.46922 * 179.97438 * 12 11 10 14 14 H 1.09003 * 109.47038 * 59.99939 * 13 12 11 15 15 O 1.42898 * 109.47239 * 299.99855 * 13 12 11 16 16 C 1.53002 * 109.47097 * 179.97438 * 13 12 11 17 17 N 1.46900 * 109.47264 * 185.00189 * 16 13 12 18 18 C 1.46900 * 110.99958 * 66.04197 * 17 16 13 19 19 C 1.46897 * 111.00270 * 190.00200 * 17 16 13 20 20 C 1.50698 * 109.47526 * 170.00161 * 19 17 16 21 21 H 1.07997 * 119.99591 * 359.97438 * 20 19 17 22 22 C 1.37878 * 120.00120 * 180.02562 * 20 19 17 23 23 N 1.31512 * 119.99753 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99907 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46955 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47532 * 119.99388 * 24 22 20 27 27 H 1.48500 * 109.46849 * 239.99437 * 24 22 20 28 28 C 1.38265 * 120.11421 * 0.27647 * 6 5 4 29 29 C 1.38143 * 120.05439 * 359.44953 * 28 6 5 30 30 H 1.09007 * 109.47091 * 59.99726 * 1 2 3 31 31 H 1.08997 * 109.47268 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47505 * 300.00144 * 1 2 3 33 33 H 1.08002 * 120.02449 * 359.95907 * 4 3 2 34 34 H 1.07993 * 119.97736 * 180.02562 * 5 4 3 35 35 H 0.96700 * 114.00311 * 60.00230 * 9 7 6 36 36 H 1.08999 * 109.47164 * 300.00418 * 10 7 6 37 37 H 1.08997 * 109.47124 * 60.00119 * 10 7 6 38 38 H 1.00904 * 110.99845 * 303.94958 * 11 10 7 39 39 H 1.09002 * 109.47169 * 299.99734 * 12 11 10 40 40 H 1.09003 * 109.47314 * 59.99718 * 12 11 10 41 41 H 0.96703 * 114.00039 * 299.99884 * 15 13 12 42 42 H 1.08998 * 109.47036 * 305.00166 * 16 13 12 43 43 H 1.09001 * 109.47344 * 64.99949 * 16 13 12 44 44 H 1.09001 * 109.46747 * 60.00636 * 18 17 16 45 45 H 1.09005 * 109.47098 * 179.97438 * 18 17 16 46 46 H 1.08992 * 109.47196 * 300.00137 * 18 17 16 47 47 H 1.09001 * 109.46751 * 289.99946 * 19 17 16 48 48 H 1.09004 * 109.47138 * 49.99393 * 19 17 16 49 49 H 0.97002 * 119.99578 * 180.02562 * 23 22 20 50 50 H 1.08003 * 119.96829 * 179.70554 * 28 6 5 51 51 H 1.08002 * 120.02755 * 180.27532 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 3.4312 1.2849 0.0005 5 6 4.0560 2.5170 0.0000 6 6 3.3017 3.6758 -0.0016 7 6 3.9860 5.0186 -0.0016 8 1 4.9813 4.9192 -0.4347 9 8 3.2197 5.9435 -0.7759 10 6 4.1038 5.5310 1.4352 11 7 4.7702 6.8401 1.4351 12 6 4.9016 7.3640 2.8012 13 6 5.5992 8.7251 2.7604 14 1 5.0091 9.4181 2.1607 15 8 6.8966 8.5783 2.1798 16 6 5.7355 9.2711 4.1832 17 7 6.2958 10.6283 4.1354 18 6 5.3616 11.5610 3.4910 19 6 6.6620 11.0943 5.4794 20 6 7.4510 12.3736 5.3699 21 1 7.6599 12.7977 4.3989 22 6 7.9072 13.0020 6.5093 23 7 7.6532 12.4851 7.6916 24 14 8.8858 14.5873 6.3734 25 1 9.0343 14.9563 4.9426 26 1 8.1725 15.6726 7.0934 27 1 10.2290 14.3930 6.9761 28 6 1.9209 3.6048 0.0031 29 6 1.2914 2.3751 -0.0021 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 4.0208 0.3800 0.0016 34 1 5.1344 2.5751 0.0000 35 1 2.3207 6.0814 -0.4474 36 1 3.1085 5.6303 1.8683 37 1 4.6882 4.8255 2.0258 38 1 5.6693 6.7881 0.9800 39 1 3.9120 7.4757 3.2443 40 1 5.4921 6.6713 3.4008 41 1 7.4775 7.9743 2.6624 42 1 4.7543 9.2996 4.6570 43 1 6.3982 8.6246 4.7586 44 1 4.4286 11.5877 4.0541 45 1 5.8010 12.5583 3.4692 46 1 5.1617 11.2293 2.4722 47 1 5.7576 11.2739 6.0606 48 1 7.2675 10.3352 5.9748 49 1 7.9738 12.9274 8.4932 50 1 1.3341 4.5115 0.0066 51 1 0.2128 2.3202 -0.0029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843066286.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:06 Heat of formation + Delta-G solvation = -133.453387 kcal Electronic energy + Delta-G solvation = -28377.258226 eV Core-core repulsion = 24275.820472 eV Total energy + Delta-G solvation = -4101.437753 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.23261 -39.80001 -39.30091 -37.63338 -37.09219 -35.54796 -34.62176 -32.27601 -32.05608 -31.13788 -29.32474 -28.65363 -27.94943 -26.82446 -25.06077 -23.87750 -23.26930 -22.66258 -21.94027 -21.71886 -19.25771 -18.57385 -18.08183 -17.66960 -17.32579 -17.17390 -16.71524 -16.66805 -16.28064 -16.06242 -15.92503 -15.76529 -15.47044 -15.37979 -14.85436 -14.63703 -14.50835 -14.33611 -13.98469 -13.84037 -13.76659 -13.43623 -13.25834 -13.20864 -12.86399 -12.81306 -12.66438 -12.57094 -12.50684 -12.37948 -12.28688 -12.00387 -11.82387 -11.68953 -11.61617 -11.40663 -11.09424 -10.64598 -10.62478 -9.99814 -9.33164 -9.11657 -8.95523 -8.21058 -6.30753 0.34024 0.36244 1.40995 1.41762 1.55849 2.35694 2.40466 2.66150 2.93214 3.11597 3.39552 3.61239 3.70122 3.77817 3.85549 3.92616 4.01851 4.09519 4.16446 4.22236 4.28547 4.30621 4.36712 4.40043 4.45520 4.50456 4.56844 4.64894 4.69135 4.71468 4.72678 4.74480 4.81269 4.91921 5.06299 5.07210 5.16791 5.18067 5.23553 5.32855 5.34298 5.59881 5.65188 5.76137 5.99078 6.06031 6.32550 6.40732 6.43434 6.64243 6.85641 6.87166 6.97368 7.39148 8.90132 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.031565 B = 0.001486 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.850675 B =18834.890759 C =19028.949747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.111 3.889 4 C -0.165 4.165 5 C -0.075 4.075 6 C -0.160 4.160 7 C 0.164 3.836 8 H 0.104 0.896 9 O -0.558 6.558 10 C 0.037 3.963 11 N -0.681 5.681 12 C 0.040 3.960 13 C 0.129 3.871 14 H 0.093 0.907 15 O -0.560 6.560 16 C 0.025 3.975 17 N -0.540 5.540 18 C 0.040 3.960 19 C 0.207 3.793 20 C -0.523 4.523 21 H 0.061 0.939 22 C 0.002 3.998 23 N -0.935 5.935 24 Si 0.970 3.030 25 H -0.265 1.265 26 H -0.278 1.278 27 H -0.278 1.278 28 C -0.075 4.075 29 C -0.210 4.210 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.064 0.936 33 H 0.137 0.863 34 H 0.146 0.854 35 H 0.382 0.618 36 H 0.077 0.923 37 H 0.043 0.957 38 H 0.348 0.652 39 H 0.082 0.918 40 H 0.041 0.959 41 H 0.379 0.621 42 H 0.033 0.967 43 H 0.068 0.932 44 H 0.011 0.989 45 H 0.054 0.946 46 H 0.076 0.924 47 H -0.039 1.039 48 H 0.004 0.996 49 H 0.264 0.736 50 H 0.143 0.857 51 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.195 -25.912 -16.531 34.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.066 3.934 4 C -0.184 4.184 5 C -0.093 4.093 6 C -0.161 4.161 7 C 0.105 3.895 8 H 0.121 0.879 9 O -0.365 6.365 10 C -0.092 4.092 11 N -0.314 5.314 12 C -0.090 4.090 13 C 0.069 3.931 14 H 0.111 0.889 15 O -0.366 6.366 16 C -0.104 4.104 17 N -0.264 5.264 18 C -0.108 4.108 19 C 0.080 3.920 20 C -0.561 4.561 21 H 0.079 0.921 22 C -0.196 4.196 23 N -0.576 5.576 24 Si 0.794 3.206 25 H -0.189 1.189 26 H -0.203 1.203 27 H -0.203 1.203 28 C -0.093 4.093 29 C -0.228 4.228 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.082 0.918 33 H 0.155 0.845 34 H 0.163 0.837 35 H 0.231 0.769 36 H 0.096 0.904 37 H 0.061 0.939 38 H 0.167 0.833 39 H 0.100 0.900 40 H 0.059 0.941 41 H 0.227 0.773 42 H 0.051 0.949 43 H 0.086 0.914 44 H 0.030 0.970 45 H 0.073 0.927 46 H 0.094 0.906 47 H -0.021 1.021 48 H 0.023 0.977 49 H 0.073 0.927 50 H 0.161 0.839 51 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -14.947 -25.297 -17.540 34.220 hybrid contribution -0.122 -0.152 2.203 2.211 sum -15.069 -25.449 -15.337 33.316 Atomic orbital electron populations 1.23328 0.76510 1.05522 1.02229 1.86048 1.23437 1.27056 1.88664 1.19324 0.92841 0.84747 0.96521 1.20644 0.91757 0.99233 1.06722 1.21028 1.00835 0.90658 0.96735 1.20513 0.94614 0.95890 1.05053 1.20603 0.94807 0.83773 0.90366 0.87873 1.86630 1.29928 1.64356 1.55618 1.22648 1.00242 0.89547 0.96767 1.60258 1.28325 1.25888 1.16904 1.22489 1.01055 0.95277 0.90211 1.21783 0.84165 0.95413 0.91769 0.88884 1.86583 1.25051 1.70060 1.54881 1.22830 0.98004 0.91453 0.98141 1.61933 1.41466 1.01680 1.21337 1.22227 0.93037 0.97157 0.98381 1.19405 0.93093 0.94833 0.84624 1.21508 1.33715 1.08022 0.92902 0.92121 1.25902 0.97415 1.01530 0.94767 1.70087 1.47687 1.41507 0.98273 0.85327 0.78130 0.78624 0.78496 1.18885 1.20323 1.20319 1.20943 0.93915 0.97947 0.96456 1.21438 1.01100 0.91901 1.08388 0.91726 0.86494 0.91766 0.84485 0.83670 0.76873 0.90446 0.93855 0.83271 0.90011 0.94108 0.77332 0.94922 0.91385 0.97011 0.92689 0.90594 1.02112 0.97745 0.92687 0.83944 0.83578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.34 -5.16 10.50 -92.45 -0.97 -6.13 16 3 C 0.11 1.76 6.69 22.51 0.15 1.91 16 4 C -0.16 -2.53 9.99 22.37 0.22 -2.31 16 5 C -0.07 -1.04 9.67 22.25 0.22 -0.82 16 6 C -0.16 -2.26 5.00 -19.85 -0.10 -2.36 16 7 C 0.16 2.41 3.41 29.85 0.10 2.52 16 8 H 0.10 1.53 8.05 -2.39 -0.02 1.51 16 9 O -0.56 -9.77 13.00 -148.98 -1.94 -11.71 16 10 C 0.04 0.56 5.33 86.30 0.46 1.02 16 11 N -0.68 -13.10 6.37 -513.89 -3.27 -16.37 16 12 C 0.04 0.82 5.39 86.30 0.47 1.29 16 13 C 0.13 3.52 3.19 30.60 0.10 3.62 16 14 H 0.09 2.79 6.33 -2.39 -0.02 2.77 16 15 O -0.56 -16.18 12.62 -148.98 -1.88 -18.06 16 16 C 0.02 0.85 4.60 86.30 0.40 1.25 16 17 N -0.54 -23.73 4.70 -927.05 -4.36 -28.09 16 18 C 0.04 1.61 9.14 127.69 1.17 2.78 16 19 C 0.21 11.20 4.72 85.56 0.40 11.61 16 20 C -0.52 -30.31 8.46 25.60 0.22 -30.10 16 21 H 0.06 3.49 7.12 -2.91 -0.02 3.47 16 22 C 0.00 0.10 5.46 84.66 0.46 0.56 16 23 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16 24 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 25 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 28 C -0.07 -0.95 9.32 22.25 0.21 -0.75 16 29 C -0.21 -2.75 9.04 22.36 0.20 -2.54 16 30 H 0.06 0.35 7.66 -2.38 -0.02 0.33 16 31 H 0.12 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.35 7.67 -2.39 -0.02 0.33 16 33 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16 34 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 35 H 0.38 4.38 7.39 -74.06 -0.55 3.84 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 38 H 0.35 6.90 8.12 -89.69 -0.73 6.18 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.38 8.62 9.05 -74.06 -0.67 7.95 16 42 H 0.03 1.09 8.12 -2.39 -0.02 1.07 16 43 H 0.07 2.31 7.93 -2.39 -0.02 2.29 16 44 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.05 2.39 6.76 -2.38 -0.02 2.38 16 46 H 0.08 2.61 6.37 -2.39 -0.02 2.59 16 47 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 48 H 0.00 0.26 7.93 -2.38 -0.02 0.24 16 49 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 50 H 0.14 1.19 6.62 -2.91 -0.02 1.17 16 51 H 0.15 1.26 6.30 -2.91 -0.02 1.24 16 Total: -1.00 -72.86 413.38 -5.32 -78.18 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -1.00 Total: 22.69 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 5.78 Total: -11.09 kcal Atomic # 7 Polarization: -93.49 SS G_CDS: -7.35 Total: -100.84 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -4.79 Total: -35.89 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -72.86 -5.32 -78.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843066286.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.271 kcal (2) G-P(sol) polarization free energy of solvation -72.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds