Wall clock time and date at job start Tue Mar 31 2020 21:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35904 * 116.99817 * 2 1 4 4 C 1.38746 * 120.05515 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94184 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05853 * 359.74621 * 5 4 3 7 7 C 1.38249 * 120.10768 * 0.51054 * 6 5 4 8 8 C 1.50695 * 119.97179 * 179.76537 * 7 6 5 9 9 H 1.08997 * 109.47477 * 159.72218 * 8 7 6 10 10 O 1.42907 * 109.47388 * 39.72336 * 8 7 6 11 11 C 1.53002 * 109.47135 * 279.72307 * 8 7 6 12 12 N 1.46906 * 109.46823 * 185.00094 * 11 8 7 13 13 C 1.46901 * 110.99528 * 179.97438 * 12 11 8 14 14 C 1.53002 * 109.47048 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.47059 * 305.00174 * 14 13 12 16 16 O 1.42898 * 109.46785 * 64.99907 * 14 13 12 17 17 C 1.53003 * 109.47153 * 185.00103 * 14 13 12 18 18 N 1.46900 * 109.47066 * 178.51012 * 17 14 13 19 19 C 1.46900 * 111.00134 * 164.00678 * 18 17 14 20 20 C 1.46898 * 111.00136 * 287.96940 * 18 17 14 21 21 C 1.50702 * 109.47367 * 169.99882 * 20 18 17 22 22 H 1.08000 * 120.00030 * 359.97438 * 21 20 18 23 23 C 1.37877 * 120.00045 * 179.97438 * 21 20 18 24 24 N 1.31519 * 119.99994 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99936 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47237 * 60.00385 * 25 23 21 27 27 H 1.48500 * 109.47328 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47228 * 300.00182 * 25 23 21 29 29 C 1.38166 * 120.05476 * 359.48551 * 7 6 5 30 30 H 1.08996 * 109.47232 * 60.00196 * 1 2 3 31 31 H 1.08997 * 109.46939 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47065 * 299.99703 * 1 2 3 33 33 H 1.08002 * 120.03331 * 0.02562 * 4 3 2 34 34 H 1.08007 * 119.97284 * 180.02562 * 5 4 3 35 35 H 1.07998 * 119.94920 * 180.27576 * 6 5 4 36 36 H 0.96696 * 113.99581 * 300.00455 * 10 8 7 37 37 H 1.08996 * 109.47207 * 304.99559 * 11 8 7 38 38 H 1.08996 * 109.47034 * 65.00300 * 11 8 7 39 39 H 1.00902 * 111.00194 * 303.95131 * 12 11 8 40 40 H 1.08998 * 109.47321 * 300.00230 * 13 12 11 41 41 H 1.09007 * 109.46908 * 60.00369 * 13 12 11 42 42 H 0.96705 * 114.00131 * 60.00140 * 16 14 13 43 43 H 1.08997 * 109.46878 * 298.51157 * 17 14 13 44 44 H 1.08994 * 109.47154 * 58.51207 * 17 14 13 45 45 H 1.09004 * 109.46220 * 65.48563 * 19 18 17 46 46 H 1.08996 * 109.46848 * 185.48152 * 19 18 17 47 47 H 1.08998 * 109.47115 * 305.49173 * 19 18 17 48 48 H 1.09003 * 109.46553 * 289.99639 * 20 18 17 49 49 H 1.09000 * 109.47535 * 49.99429 * 20 18 17 50 50 H 0.96998 * 119.99511 * 179.97438 * 24 23 21 51 51 H 1.07998 * 120.02856 * 180.27101 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6758 0.0064 7 6 4.0560 2.5171 0.0005 8 6 5.5608 2.5982 0.0009 9 1 5.9755 1.6534 0.3523 10 8 5.9807 3.6542 0.8674 11 6 6.0570 2.8761 -1.4194 12 7 7.5253 2.8365 -1.4416 13 6 8.0386 3.0990 -2.7928 14 6 9.5677 3.0501 -2.7759 15 1 9.9451 3.7443 -2.0251 16 8 9.9984 1.7250 -2.4587 17 6 10.1059 3.4456 -4.1525 18 7 11.5746 3.4332 -4.1261 19 6 12.1256 3.4311 -5.4879 20 6 12.0967 4.5649 -3.3486 21 6 13.5780 4.3873 -3.1357 22 1 14.0812 3.5202 -3.5374 23 6 14.2909 5.3318 -2.4281 24 7 13.6781 6.3874 -1.9384 25 14 16.1271 5.1120 -2.1648 26 1 16.8128 5.0569 -3.4809 27 1 16.6550 6.2560 -1.3787 28 1 16.3734 3.8481 -1.4251 29 6 3.4311 1.2848 0.0000 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2128 2.3204 0.0014 34 1 1.3339 4.5114 0.0019 35 1 3.7922 4.6381 0.0113 36 1 5.6480 4.5262 0.6145 37 1 5.6628 2.1186 -2.0967 38 1 5.7153 3.8611 -1.7374 39 1 7.9147 3.4853 -0.7742 40 1 7.6580 2.3428 -3.4793 41 1 7.7106 4.0855 -3.1207 42 1 9.6983 1.0531 -3.0862 43 1 9.7498 2.7360 -4.8993 44 1 9.7555 4.4461 -4.4059 45 1 11.8744 4.3692 -5.9828 46 1 13.2092 3.3237 -5.4411 47 1 11.7018 2.5989 -6.0500 48 1 11.9163 5.4927 -3.8916 49 1 11.5931 4.6054 -2.3828 50 1 14.1796 7.0517 -1.4403 51 1 4.0206 0.3799 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843070751.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:13 Heat of formation + Delta-G solvation = -103.791149 kcal Electronic energy + Delta-G solvation = -28693.575169 eV Core-core repulsion = 24593.423667 eV Total energy + Delta-G solvation = -4100.151502 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.66245 -38.97144 -38.03181 -36.86676 -35.64800 -34.49665 -32.43823 -32.13000 -30.74541 -29.94185 -28.04861 -27.53188 -27.16095 -25.22180 -23.55542 -23.03162 -22.64026 -21.62100 -21.10497 -19.96571 -18.57519 -17.00426 -16.83617 -16.47778 -16.38924 -16.20780 -16.15989 -15.71982 -15.18236 -15.05133 -14.70794 -14.59167 -14.17292 -14.12009 -13.96713 -13.65051 -13.39682 -13.18429 -13.04204 -12.76528 -12.52089 -12.31949 -12.11798 -11.91695 -11.81452 -11.66391 -11.46550 -11.34503 -11.13286 -11.10872 -10.89082 -10.67581 -10.61250 -10.43091 -10.30248 -9.70677 -9.47004 -9.23460 -9.07834 -8.61402 -8.41254 -8.36581 -7.16291 -5.97432 -3.97624 0.86371 1.04315 2.81671 3.29594 3.38425 3.41965 3.45866 3.87703 4.21083 4.36042 4.41839 4.48992 4.61523 4.67008 4.67890 4.72476 4.79631 4.89880 4.97004 4.99857 5.01473 5.09972 5.17861 5.33031 5.37688 5.46307 5.49001 5.56629 5.65294 5.69343 5.74468 5.77781 5.86869 6.00888 6.06988 6.12746 6.16447 6.32697 6.36429 6.54258 6.74566 6.92613 6.96677 7.31490 7.32689 7.34813 7.39442 7.85061 8.13248 8.22454 8.31995 8.60784 9.09161 9.66031 11.13728 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.001738 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.948340 B =16109.981334 C =16682.005101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.317 6.317 3 C 0.128 3.872 4 C -0.210 4.210 5 C -0.077 4.077 6 C -0.149 4.149 7 C -0.073 4.073 8 C 0.149 3.851 9 H 0.121 0.879 10 O -0.548 6.548 11 C 0.035 3.965 12 N -0.675 5.675 13 C 0.029 3.971 14 C 0.118 3.882 15 H 0.101 0.899 16 O -0.530 6.530 17 C 0.026 3.974 18 N -0.530 5.530 19 C 0.040 3.960 20 C 0.193 3.807 21 C -0.504 4.504 22 H 0.063 0.937 23 C 0.054 3.946 24 N -0.901 5.901 25 Si 0.899 3.101 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.275 1.275 29 C -0.139 4.139 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.055 0.945 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.371 0.629 37 H 0.080 0.920 38 H 0.031 0.969 39 H 0.351 0.649 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.360 0.640 43 H 0.060 0.940 44 H 0.028 0.972 45 H 0.009 0.991 46 H 0.073 0.927 47 H 0.042 0.958 48 H -0.013 1.013 49 H 0.032 0.968 50 H 0.261 0.739 51 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.612 -7.788 1.301 30.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.083 3.917 4 C -0.229 4.229 5 C -0.095 4.095 6 C -0.168 4.168 7 C -0.074 4.074 8 C 0.089 3.911 9 H 0.138 0.862 10 O -0.353 6.353 11 C -0.095 4.095 12 N -0.307 5.307 13 C -0.101 4.101 14 C 0.058 3.942 15 H 0.119 0.881 16 O -0.332 6.332 17 C -0.104 4.104 18 N -0.254 5.254 19 C -0.108 4.108 20 C 0.068 3.932 21 C -0.543 4.543 22 H 0.081 0.919 23 C -0.147 4.147 24 N -0.541 5.541 25 Si 0.727 3.273 26 H -0.204 1.204 27 H -0.214 1.214 28 H -0.201 1.201 29 C -0.158 4.158 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.219 0.781 37 H 0.099 0.901 38 H 0.049 0.951 39 H 0.171 0.829 40 H 0.090 0.910 41 H 0.052 0.948 42 H 0.205 0.795 43 H 0.079 0.921 44 H 0.046 0.954 45 H 0.028 0.972 46 H 0.092 0.908 47 H 0.061 0.939 48 H 0.005 0.995 49 H 0.050 0.950 50 H 0.070 0.930 51 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -28.720 -9.104 2.381 30.222 hybrid contribution -0.495 2.158 -1.188 2.513 sum -29.215 -6.946 1.193 30.053 Atomic orbital electron populations 1.23068 0.78289 1.04073 1.01342 1.86090 1.21456 1.26863 1.88646 1.18996 0.92259 0.84219 0.96213 1.21252 1.00056 0.92446 1.09103 1.20898 0.94424 0.97074 0.97111 1.20806 0.93904 0.97906 1.04143 1.20360 0.96629 0.92765 0.97642 1.20922 0.87522 0.92770 0.89875 0.86173 1.86713 1.75855 1.18436 1.54295 1.22606 0.89738 1.00462 0.96708 1.60285 1.04664 1.58546 1.07223 1.22731 0.97269 0.99530 0.90578 1.21869 0.89389 0.86031 0.96929 0.88085 1.86701 1.77730 1.15595 1.53201 1.22680 0.91744 0.99100 0.96855 1.62029 1.02983 1.47516 1.12922 1.22195 1.01593 0.97648 0.89404 1.19770 0.95709 0.85218 0.92524 1.21122 0.92731 1.06645 1.33773 0.91930 1.24982 0.98707 0.95209 0.95766 1.69946 1.36113 1.11066 1.36945 0.86550 0.85056 0.77585 0.78153 1.20370 1.21421 1.20092 1.20269 0.91400 0.98241 1.05845 0.92620 0.88122 0.92625 0.85487 0.85615 0.85985 0.78142 0.90113 0.95065 0.82915 0.91039 0.94785 0.79503 0.92143 0.95388 0.97240 0.90793 0.93883 0.99503 0.95040 0.92959 0.84761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.80 10.50 -19.44 -0.20 -3.00 16 3 C 0.13 1.18 6.69 -39.22 -0.26 0.92 16 4 C -0.21 -1.61 9.04 -39.44 -0.36 -1.97 16 5 C -0.08 -0.57 10.04 -39.61 -0.40 -0.96 16 6 C -0.15 -1.19 9.32 -39.56 -0.37 -1.56 16 7 C -0.07 -0.66 4.97 -104.65 -0.52 -1.18 16 8 C 0.15 1.43 3.45 -27.88 -0.10 1.34 16 9 H 0.12 1.27 8.00 -51.93 -0.42 0.86 16 10 O -0.55 -5.69 12.71 -35.23 -0.45 -6.14 16 11 C 0.03 0.34 5.34 -3.82 -0.02 0.32 16 12 N -0.67 -8.41 6.45 -113.77 -0.73 -9.15 16 13 C 0.03 0.37 5.32 -3.82 -0.02 0.35 16 14 C 0.12 1.96 3.17 -26.73 -0.08 1.88 16 15 H 0.10 2.00 6.55 -51.93 -0.34 1.66 16 16 O -0.53 -9.39 13.18 -35.23 -0.46 -9.85 16 17 C 0.03 0.46 4.63 -3.82 -0.02 0.44 16 18 N -0.53 -11.63 4.60 -244.37 -1.12 -12.75 16 19 C 0.04 0.79 9.33 60.06 0.56 1.35 16 20 C 0.19 5.11 4.57 -4.98 -0.02 5.09 16 21 C -0.50 -14.55 8.54 -34.44 -0.29 -14.85 16 22 H 0.06 1.80 7.10 -52.49 -0.37 1.42 16 23 C 0.05 1.57 5.46 -17.82 -0.10 1.48 16 24 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 25 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 C -0.14 -1.32 9.61 -39.43 -0.38 -1.70 16 30 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.21 7.66 -51.93 -0.40 -0.18 16 33 H 0.13 0.70 6.30 -52.49 -0.33 0.37 16 34 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 35 H 0.12 0.74 6.77 -52.49 -0.36 0.39 16 36 H 0.37 2.62 7.49 45.56 0.34 2.97 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 39 H 0.35 4.71 8.29 -39.29 -0.33 4.39 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.36 4.95 9.05 45.56 0.41 5.37 16 43 H 0.06 0.90 7.88 -51.93 -0.41 0.49 16 44 H 0.03 0.49 8.05 -51.93 -0.42 0.08 16 45 H 0.01 0.18 8.13 -51.93 -0.42 -0.24 16 46 H 0.07 1.56 6.90 -51.93 -0.36 1.20 16 47 H 0.04 0.71 7.97 -51.93 -0.41 0.30 16 48 H -0.01 -0.36 8.11 -51.93 -0.42 -0.78 16 49 H 0.03 0.89 6.38 -51.93 -0.33 0.56 16 50 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.13 1.19 8.04 -52.49 -0.42 0.77 16 LS Contribution 414.26 15.07 6.24 6.24 Total: -1.00 -34.45 414.26 -9.45 -43.90 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -7.05 Total: 7.96 kcal Atomic # 6 Polarization: -6.55 SS G_CDS: -1.39 Total: -7.94 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -1.12 Total: -48.33 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -1.12 Total: -18.99 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.45 -9.45 -43.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843070751.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.893 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds