Wall clock time and date at job start Tue Mar 31 2020 21:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35904 * 116.99817 * 2 1 4 4 C 1.38746 * 120.05515 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94184 * 179.97438 * 4 3 2 6 6 C 1.38287 * 120.05853 * 359.74621 * 5 4 3 7 7 C 1.38249 * 120.10768 * 0.51054 * 6 5 4 8 8 C 1.50695 * 119.97179 * 179.76537 * 7 6 5 9 9 H 1.08997 * 109.47477 * 159.72218 * 8 7 6 10 10 O 1.42907 * 109.47388 * 39.72336 * 8 7 6 11 11 C 1.53002 * 109.47135 * 279.72307 * 8 7 6 12 12 N 1.46906 * 109.46823 * 185.00094 * 11 8 7 13 13 C 1.46901 * 110.99528 * 179.97438 * 12 11 8 14 14 C 1.53002 * 109.47048 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.47059 * 305.00174 * 14 13 12 16 16 O 1.42898 * 109.46785 * 64.99907 * 14 13 12 17 17 C 1.53003 * 109.47153 * 185.00103 * 14 13 12 18 18 N 1.46900 * 109.47066 * 178.51012 * 17 14 13 19 19 C 1.46900 * 111.00134 * 164.00678 * 18 17 14 20 20 C 1.46898 * 111.00136 * 287.96940 * 18 17 14 21 21 C 1.50702 * 109.47367 * 169.99882 * 20 18 17 22 22 H 1.08000 * 120.00030 * 359.97438 * 21 20 18 23 23 C 1.37877 * 120.00045 * 179.97438 * 21 20 18 24 24 N 1.31519 * 119.99994 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 119.99936 * 180.02562 * 23 21 20 26 26 H 1.48501 * 109.47237 * 60.00385 * 25 23 21 27 27 H 1.48500 * 109.47328 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47228 * 300.00182 * 25 23 21 29 29 C 1.38166 * 120.05476 * 359.48551 * 7 6 5 30 30 H 1.08996 * 109.47232 * 60.00196 * 1 2 3 31 31 H 1.08997 * 109.46939 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47065 * 299.99703 * 1 2 3 33 33 H 1.08002 * 120.03331 * 0.02562 * 4 3 2 34 34 H 1.08007 * 119.97284 * 180.02562 * 5 4 3 35 35 H 1.07998 * 119.94920 * 180.27576 * 6 5 4 36 36 H 0.96696 * 113.99581 * 300.00455 * 10 8 7 37 37 H 1.08996 * 109.47207 * 304.99559 * 11 8 7 38 38 H 1.08996 * 109.47034 * 65.00300 * 11 8 7 39 39 H 1.00902 * 111.00194 * 303.95131 * 12 11 8 40 40 H 1.08998 * 109.47321 * 300.00230 * 13 12 11 41 41 H 1.09007 * 109.46908 * 60.00369 * 13 12 11 42 42 H 0.96705 * 114.00131 * 60.00140 * 16 14 13 43 43 H 1.08997 * 109.46878 * 298.51157 * 17 14 13 44 44 H 1.08994 * 109.47154 * 58.51207 * 17 14 13 45 45 H 1.09004 * 109.46220 * 65.48563 * 19 18 17 46 46 H 1.08996 * 109.46848 * 185.48152 * 19 18 17 47 47 H 1.08998 * 109.47115 * 305.49173 * 19 18 17 48 48 H 1.09003 * 109.46553 * 289.99639 * 20 18 17 49 49 H 1.09000 * 109.47535 * 49.99429 * 20 18 17 50 50 H 0.96998 * 119.99511 * 179.97438 * 24 23 21 51 51 H 1.07998 * 120.02856 * 180.27101 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9209 3.6047 0.0011 6 6 3.3019 3.6758 0.0064 7 6 4.0560 2.5171 0.0005 8 6 5.5608 2.5982 0.0009 9 1 5.9755 1.6534 0.3523 10 8 5.9807 3.6542 0.8674 11 6 6.0570 2.8761 -1.4194 12 7 7.5253 2.8365 -1.4416 13 6 8.0386 3.0990 -2.7928 14 6 9.5677 3.0501 -2.7759 15 1 9.9451 3.7443 -2.0251 16 8 9.9984 1.7250 -2.4587 17 6 10.1059 3.4456 -4.1525 18 7 11.5746 3.4332 -4.1261 19 6 12.1256 3.4311 -5.4879 20 6 12.0967 4.5649 -3.3486 21 6 13.5780 4.3873 -3.1357 22 1 14.0812 3.5202 -3.5374 23 6 14.2909 5.3318 -2.4281 24 7 13.6781 6.3874 -1.9384 25 14 16.1271 5.1120 -2.1648 26 1 16.8128 5.0569 -3.4809 27 1 16.6550 6.2560 -1.3787 28 1 16.3734 3.8481 -1.4251 29 6 3.4311 1.2848 0.0000 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2128 2.3204 0.0014 34 1 1.3339 4.5114 0.0019 35 1 3.7922 4.6381 0.0113 36 1 5.6480 4.5262 0.6145 37 1 5.6628 2.1186 -2.0967 38 1 5.7153 3.8611 -1.7374 39 1 7.9147 3.4853 -0.7742 40 1 7.6580 2.3428 -3.4793 41 1 7.7106 4.0855 -3.1207 42 1 9.6983 1.0531 -3.0862 43 1 9.7498 2.7360 -4.8993 44 1 9.7555 4.4461 -4.4059 45 1 11.8744 4.3692 -5.9828 46 1 13.2092 3.3237 -5.4411 47 1 11.7018 2.5989 -6.0500 48 1 11.9163 5.4927 -3.8916 49 1 11.5931 4.6054 -2.3828 50 1 14.1796 7.0517 -1.4403 51 1 4.0206 0.3799 -0.0001 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843070751.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:12 Heat of formation + Delta-G solvation = -133.406295 kcal Electronic energy + Delta-G solvation = -28694.859378 eV Core-core repulsion = 24593.423667 eV Total energy + Delta-G solvation = -4101.435711 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.26088 -39.78490 -39.28129 -37.68025 -37.08535 -35.59901 -34.59138 -32.82187 -31.47512 -31.03007 -29.42438 -28.75359 -28.06305 -26.54111 -25.18441 -23.64989 -23.61604 -22.88119 -21.87085 -21.60810 -19.19380 -18.59482 -17.93623 -17.46767 -17.26184 -16.99909 -16.85084 -16.66931 -16.65128 -16.25395 -16.04498 -15.76193 -15.63436 -15.17105 -14.82796 -14.68064 -14.58663 -14.29129 -14.02061 -13.86992 -13.68616 -13.30456 -13.17159 -13.09934 -12.92399 -12.75502 -12.61516 -12.57095 -12.51019 -12.38393 -12.31547 -12.14550 -11.98563 -11.76565 -11.49368 -11.32429 -11.21064 -10.64104 -10.58638 -9.87357 -9.36447 -9.20892 -8.93457 -8.19507 -6.28728 0.24677 0.43477 1.40399 1.44647 1.52072 2.32147 2.41284 2.66075 2.93658 3.13001 3.38954 3.51637 3.72317 3.79546 3.83197 3.94737 3.99767 4.08249 4.16905 4.21833 4.29657 4.33185 4.37896 4.39318 4.47039 4.49326 4.55846 4.59293 4.61503 4.71011 4.72277 4.74957 4.78539 4.94238 4.99895 5.08297 5.12703 5.25248 5.28080 5.32066 5.42766 5.54383 5.65722 5.75183 6.00000 6.08347 6.32405 6.36832 6.42263 6.66753 6.72537 6.86729 7.15887 7.40444 8.91412 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021321 B = 0.001738 C = 0.001678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.948340 B =16109.981334 C =16682.005101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.114 3.886 4 C -0.211 4.211 5 C -0.079 4.079 6 C -0.156 4.156 7 C -0.079 4.079 8 C 0.156 3.844 9 H 0.104 0.896 10 O -0.565 6.565 11 C 0.042 3.958 12 N -0.687 5.687 13 C 0.043 3.957 14 C 0.125 3.875 15 H 0.059 0.941 16 O -0.553 6.553 17 C 0.027 3.973 18 N -0.543 5.543 19 C 0.042 3.958 20 C 0.210 3.790 21 C -0.525 4.525 22 H 0.060 0.940 23 C 0.000 4.000 24 N -0.934 5.934 25 Si 0.969 3.031 26 H -0.266 1.266 27 H -0.282 1.282 28 H -0.271 1.271 29 C -0.159 4.159 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.065 0.935 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.140 0.860 36 H 0.384 0.616 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.343 0.657 40 H 0.094 0.906 41 H 0.041 0.959 42 H 0.378 0.622 43 H 0.098 0.902 44 H 0.027 0.973 45 H 0.008 0.992 46 H 0.053 0.947 47 H 0.083 0.917 48 H -0.041 1.041 49 H 0.005 0.995 50 H 0.264 0.736 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.007 -8.226 0.359 32.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.069 3.931 4 C -0.230 4.230 5 C -0.097 4.097 6 C -0.174 4.174 7 C -0.080 4.080 8 C 0.097 3.903 9 H 0.122 0.878 10 O -0.373 6.373 11 C -0.087 4.087 12 N -0.319 5.319 13 C -0.087 4.087 14 C 0.064 3.936 15 H 0.077 0.923 16 O -0.358 6.358 17 C -0.102 4.102 18 N -0.267 5.267 19 C -0.107 4.107 20 C 0.084 3.916 21 C -0.563 4.563 22 H 0.078 0.922 23 C -0.197 4.197 24 N -0.575 5.575 25 Si 0.793 3.207 26 H -0.190 1.190 27 H -0.207 1.207 28 H -0.196 1.196 29 C -0.178 4.178 30 H 0.085 0.915 31 H 0.135 0.865 32 H 0.083 0.917 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.158 0.842 36 H 0.234 0.766 37 H 0.104 0.896 38 H 0.062 0.938 39 H 0.161 0.839 40 H 0.112 0.888 41 H 0.059 0.941 42 H 0.226 0.774 43 H 0.116 0.884 44 H 0.045 0.955 45 H 0.026 0.974 46 H 0.072 0.928 47 H 0.101 0.899 48 H -0.024 1.024 49 H 0.023 0.977 50 H 0.073 0.927 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -30.148 -9.561 1.409 31.659 hybrid contribution -0.169 2.250 -0.895 2.427 sum -30.317 -7.311 0.514 31.190 Atomic orbital electron populations 1.23341 0.76369 1.05550 1.02305 1.86057 1.23562 1.27023 1.88704 1.19167 0.92330 0.84980 0.96622 1.21552 1.01215 0.92031 1.08156 1.21251 0.94400 0.97972 0.96047 1.21080 0.94450 0.98199 1.03686 1.20278 0.96063 0.93172 0.98537 1.20740 0.88090 0.91982 0.89505 0.87816 1.86677 1.76317 1.19453 1.54807 1.22581 0.87939 1.01243 0.96957 1.60284 1.06329 1.58450 1.06837 1.22538 0.94151 1.00700 0.91271 1.21674 0.91902 0.84899 0.95085 0.92331 1.86650 1.78458 1.16373 1.54363 1.22800 0.88880 1.00121 0.98430 1.61926 1.05877 1.44993 1.13880 1.22216 1.00651 0.99231 0.88562 1.19376 0.94823 0.85731 0.91702 1.21467 0.94112 1.06715 1.34043 0.92166 1.25912 1.03789 0.94769 0.95272 1.70074 1.38062 1.11861 1.37477 0.85447 0.78999 0.77673 0.78562 1.19043 1.20704 1.19639 1.20379 0.92068 0.98383 1.06994 0.91550 0.86550 0.91664 0.83321 0.83070 0.84249 0.76579 0.89629 0.93821 0.83892 0.88816 0.94067 0.77438 0.88389 0.95506 0.97353 0.92767 0.89855 1.02388 0.97721 0.92740 0.85327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.84 10.50 -92.47 -0.97 -6.81 16 3 C 0.11 2.04 6.69 22.50 0.15 2.19 16 4 C -0.21 -2.88 9.04 22.36 0.20 -2.68 16 5 C -0.08 -0.99 10.04 22.25 0.22 -0.77 16 6 C -0.16 -2.25 9.32 22.28 0.21 -2.04 16 7 C -0.08 -1.41 4.97 -19.88 -0.10 -1.51 16 8 C 0.16 3.02 3.45 29.85 0.10 3.12 16 9 H 0.10 2.31 8.00 -2.39 -0.02 2.29 16 10 O -0.57 -11.71 12.71 -148.98 -1.89 -13.61 16 11 C 0.04 0.79 5.34 86.30 0.46 1.25 16 12 N -0.69 -16.92 6.45 -513.87 -3.31 -20.23 16 13 C 0.04 1.05 5.32 86.30 0.46 1.51 16 14 C 0.12 4.15 3.17 30.60 0.10 4.25 16 15 H 0.06 2.45 6.55 -2.39 -0.02 2.44 16 16 O -0.55 -19.41 13.18 -148.98 -1.96 -21.38 16 17 C 0.03 0.91 4.63 86.30 0.40 1.31 16 18 N -0.54 -23.81 4.60 -927.06 -4.27 -28.08 16 19 C 0.04 1.60 9.33 127.69 1.19 2.79 16 20 C 0.21 11.54 4.57 85.56 0.39 11.93 16 21 C -0.53 -30.98 8.54 25.60 0.22 -30.76 16 22 H 0.06 3.50 7.10 -2.91 -0.02 3.48 16 23 C 0.00 0.02 5.46 84.65 0.46 0.49 16 24 N -0.93 -57.62 13.29 21.45 0.28 -57.34 16 25 Si 0.97 45.78 29.54 68.60 2.03 47.80 16 26 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 27 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 28 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 29 C -0.16 -3.08 9.61 22.37 0.21 -2.86 16 30 H 0.07 0.38 7.66 -2.39 -0.02 0.36 16 31 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.39 7.66 -2.39 -0.02 0.37 16 33 H 0.15 1.26 6.30 -2.91 -0.02 1.24 16 34 H 0.15 1.07 8.06 -2.91 -0.02 1.04 16 35 H 0.14 1.42 6.77 -2.91 -0.02 1.40 16 36 H 0.38 5.19 7.49 -74.06 -0.55 4.63 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.34 9.43 8.29 -89.69 -0.74 8.68 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.38 9.80 9.05 -74.05 -0.67 9.13 16 43 H 0.10 2.60 7.88 -2.39 -0.02 2.58 16 44 H 0.03 0.93 8.05 -2.39 -0.02 0.91 16 45 H 0.01 0.31 8.13 -2.38 -0.02 0.29 16 46 H 0.05 2.27 6.90 -2.39 -0.02 2.25 16 47 H 0.08 2.51 7.97 -2.39 -0.02 2.49 16 48 H -0.04 -2.46 8.11 -2.39 -0.02 -2.48 16 49 H 0.00 0.28 6.38 -2.39 -0.02 0.27 16 50 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 51 H 0.13 2.45 8.04 -2.91 -0.02 2.43 16 Total: -1.00 -76.24 414.26 -5.32 -81.56 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -1.02 Total: 28.60 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 5.79 Total: -10.52 kcal Atomic # 7 Polarization: -98.35 SS G_CDS: -7.30 Total: -105.65 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -4.83 Total: -41.79 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.80 kcal Total: -76.24 -5.32 -81.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843070751.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.842 kcal (2) G-P(sol) polarization free energy of solvation -76.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds