Wall clock time and date at job start Tue Mar 31 2020 21:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35901 * 116.99517 * 2 1 4 4 C 1.38757 * 120.05644 * 0.02779 * 3 2 1 5 5 C 1.38123 * 119.94060 * 179.97438 * 4 3 2 6 6 C 1.38286 * 120.05654 * 359.97357 * 5 4 3 7 7 C 1.38243 * 120.11444 * 0.02562 * 6 5 4 8 8 C 1.50702 * 119.97211 * 179.97438 * 7 6 5 9 9 H 1.08997 * 109.46733 * 205.00073 * 8 7 6 10 10 O 1.42901 * 109.47036 * 324.99552 * 8 7 6 11 11 C 1.52994 * 109.47208 * 84.99573 * 8 7 6 12 12 N 1.46904 * 109.46977 * 179.97438 * 11 8 7 13 13 C 1.46902 * 110.99889 * 180.02562 * 12 11 8 14 14 C 1.53003 * 109.47015 * 180.02562 * 13 12 11 15 15 H 1.09004 * 109.46745 * 60.00419 * 14 13 12 16 16 O 1.42892 * 109.47034 * 299.99909 * 14 13 12 17 17 C 1.53004 * 109.47052 * 179.97438 * 14 13 12 18 18 N 1.46902 * 109.47029 * 180.46201 * 17 14 13 19 19 C 1.46898 * 110.99708 * 199.85452 * 18 17 14 20 20 C 1.46899 * 110.99433 * 75.89974 * 18 17 14 21 21 C 1.50706 * 109.46461 * 189.99933 * 20 18 17 22 22 H 1.07997 * 120.00197 * 359.97438 * 21 20 18 23 23 C 1.37879 * 119.99789 * 180.02562 * 21 20 18 24 24 N 1.31516 * 120.00029 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99947 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47435 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47245 * 120.00149 * 25 23 21 28 28 H 1.48507 * 109.46988 * 239.99572 * 25 23 21 29 29 C 1.38158 * 120.05287 * 0.02562 * 7 6 5 30 30 H 1.08994 * 109.47752 * 60.00134 * 1 2 3 31 31 H 1.09007 * 109.47022 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47246 * 299.99263 * 1 2 3 33 33 H 1.07998 * 120.02878 * 359.97438 * 4 3 2 34 34 H 1.08006 * 119.96867 * 179.97438 * 5 4 3 35 35 H 1.08010 * 119.93899 * 180.27638 * 6 5 4 36 36 H 0.96706 * 113.99706 * 60.00249 * 10 8 7 37 37 H 1.08997 * 109.47682 * 299.99920 * 11 8 7 38 38 H 1.08996 * 109.47103 * 60.00274 * 11 8 7 39 39 H 1.00897 * 111.00174 * 303.95502 * 12 11 8 40 40 H 1.09007 * 109.47250 * 300.00454 * 13 12 11 41 41 H 1.08999 * 109.47059 * 60.00267 * 13 12 11 42 42 H 0.96696 * 114.00632 * 300.00370 * 16 14 13 43 43 H 1.09002 * 109.47160 * 300.46422 * 17 14 13 44 44 H 1.08999 * 109.47070 * 60.46283 * 17 14 13 45 45 H 1.08994 * 109.47471 * 64.82365 * 19 18 17 46 46 H 1.09006 * 109.47044 * 184.82771 * 19 18 17 47 47 H 1.09005 * 109.47037 * 304.81589 * 19 18 17 48 48 H 1.08990 * 109.47506 * 309.99427 * 20 18 17 49 49 H 1.09000 * 109.47125 * 70.00419 * 20 18 17 50 50 H 0.97002 * 119.99829 * 179.97438 * 24 23 21 51 51 H 1.08001 * 120.02838 * 180.02562 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2109 0.0000 4 6 1.2912 2.3753 0.0006 5 6 1.9206 3.6048 0.0011 6 6 3.3017 3.6759 0.0016 7 6 4.0558 2.5173 0.0011 8 6 5.5606 2.5984 0.0010 9 1 5.9735 1.6882 -0.4337 10 8 5.9768 3.7264 -0.7713 11 6 6.0632 2.7509 1.4380 12 7 7.5301 2.8294 1.4380 13 6 8.0495 2.9760 2.8043 14 6 9.5769 3.0548 2.7635 15 1 9.8805 3.9140 2.1653 16 8 10.1002 1.8597 2.1807 17 6 10.1178 3.2081 4.1865 18 7 11.5837 3.2949 4.1464 19 6 12.1661 2.9729 5.4560 20 6 12.0201 4.6205 3.6877 21 6 13.5038 4.5974 3.4243 22 1 14.0663 3.6892 3.5824 23 6 14.1433 5.7363 2.9826 24 7 13.4584 6.8425 2.7906 25 14 15.9822 5.7076 2.6555 26 1 16.5156 4.3525 2.9458 27 1 16.2371 6.0461 1.2323 28 1 16.6559 6.7018 3.5290 29 6 3.4310 1.2850 -0.0005 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 0.2126 2.3203 0.0006 34 1 1.3336 4.5114 0.0012 35 1 3.7919 4.6383 0.0066 36 1 5.6453 4.5729 -0.4414 37 1 5.6503 3.6611 1.8728 38 1 5.7458 1.8905 2.0271 39 1 7.9352 2.0258 0.9818 40 1 7.6506 3.8879 3.2488 41 1 7.7455 2.1171 3.4026 42 1 9.8688 1.0534 2.6618 43 1 9.7122 4.1157 4.6336 44 1 9.8211 2.3453 4.7829 45 1 11.9560 1.9319 5.7011 46 1 13.2446 3.1277 5.4221 47 1 11.7301 3.6205 6.2167 48 1 11.4923 4.8793 2.7699 49 1 11.7989 5.3617 4.4556 50 1 13.9084 7.6438 2.4802 51 1 4.0205 0.3801 -0.0006 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843070753.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:19 Heat of formation + Delta-G solvation = -133.128145 kcal Electronic energy + Delta-G solvation = -28677.056713 eV Core-core repulsion = 24575.633063 eV Total energy + Delta-G solvation = -4101.423650 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.25281 -39.77882 -39.27546 -37.65792 -37.11040 -35.56615 -34.59235 -32.79737 -31.47486 -31.05514 -29.41640 -28.76056 -28.05493 -26.54803 -25.16761 -23.68717 -23.61825 -22.77767 -21.86169 -21.64543 -19.18207 -18.60977 -17.88762 -17.40543 -17.26788 -17.17077 -16.87757 -16.66378 -16.58211 -16.16951 -16.05429 -15.75333 -15.56979 -15.28536 -14.88053 -14.74925 -14.46058 -14.18961 -13.99491 -13.88323 -13.64468 -13.41504 -13.16098 -13.09973 -12.91674 -12.74719 -12.61962 -12.55833 -12.52210 -12.36897 -12.27664 -12.13925 -11.97841 -11.75812 -11.51225 -11.30981 -11.13975 -10.69569 -10.60197 -9.85926 -9.32155 -9.20345 -8.93210 -8.19159 -6.28561 0.25064 0.43774 1.40316 1.42219 1.55467 2.31790 2.41483 2.66311 2.93497 3.13401 3.38754 3.59325 3.72822 3.78333 3.83530 3.94324 4.03261 4.11533 4.15037 4.19840 4.29424 4.33423 4.37368 4.37754 4.43832 4.51302 4.55835 4.58900 4.63808 4.68838 4.71960 4.78752 4.79952 4.91259 5.01041 5.09594 5.15318 5.27144 5.27989 5.32129 5.43506 5.55875 5.66287 5.74446 6.01320 6.08985 6.36589 6.41552 6.42532 6.66542 6.82911 6.87671 7.07518 7.40724 8.92254 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.021932 B = 0.001723 C = 0.001659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.395729 B =16246.037093 C =16870.785794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.114 3.886 4 C -0.212 4.212 5 C -0.079 4.079 6 C -0.156 4.156 7 C -0.080 4.080 8 C 0.157 3.843 9 H 0.103 0.897 10 O -0.558 6.558 11 C 0.041 3.959 12 N -0.689 5.689 13 C 0.045 3.955 14 C 0.126 3.874 15 H 0.062 0.938 16 O -0.558 6.558 17 C 0.027 3.973 18 N -0.542 5.542 19 C 0.039 3.961 20 C 0.210 3.790 21 C -0.523 4.523 22 H 0.061 0.939 23 C -0.001 4.001 24 N -0.935 5.935 25 Si 0.970 3.030 26 H -0.264 1.264 27 H -0.280 1.280 28 H -0.276 1.276 29 C -0.160 4.160 30 H 0.065 0.935 31 H 0.117 0.883 32 H 0.065 0.935 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.383 0.617 37 H 0.079 0.921 38 H 0.048 0.952 39 H 0.348 0.652 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.378 0.622 43 H 0.028 0.972 44 H 0.096 0.904 45 H 0.081 0.919 46 H 0.054 0.946 47 H 0.012 0.988 48 H 0.003 0.997 49 H -0.041 1.041 50 H 0.264 0.736 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.189 -12.224 -2.318 32.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.069 3.931 4 C -0.230 4.230 5 C -0.097 4.097 6 C -0.174 4.174 7 C -0.081 4.081 8 C 0.097 3.903 9 H 0.121 0.879 10 O -0.365 6.365 11 C -0.088 4.088 12 N -0.322 5.322 13 C -0.085 4.085 14 C 0.066 3.934 15 H 0.080 0.920 16 O -0.363 6.363 17 C -0.102 4.102 18 N -0.266 5.266 19 C -0.109 4.109 20 C 0.083 3.917 21 C -0.561 4.561 22 H 0.079 0.921 23 C -0.199 4.199 24 N -0.575 5.575 25 Si 0.794 3.206 26 H -0.188 1.188 27 H -0.205 1.205 28 H -0.202 1.202 29 C -0.179 4.179 30 H 0.083 0.917 31 H 0.135 0.865 32 H 0.084 0.916 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.156 0.844 36 H 0.233 0.767 37 H 0.097 0.903 38 H 0.066 0.934 39 H 0.167 0.833 40 H 0.096 0.904 41 H 0.072 0.928 42 H 0.226 0.774 43 H 0.046 0.954 44 H 0.114 0.886 45 H 0.100 0.900 46 H 0.073 0.927 47 H 0.030 0.970 48 H 0.021 0.979 49 H -0.024 1.024 50 H 0.073 0.927 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -29.370 -11.959 -3.600 31.915 hybrid contribution -0.235 0.376 1.447 1.513 sum -29.605 -11.583 -2.154 31.863 Atomic orbital electron populations 1.23337 0.76397 1.05544 1.02289 1.86049 1.23532 1.26988 1.88722 1.19168 0.92385 0.84935 0.96652 1.21551 1.01203 0.92056 1.08222 1.21250 0.94404 0.97986 0.96054 1.21092 0.94426 0.98352 1.03561 1.20321 0.96205 0.93152 0.98436 1.20693 0.87987 0.90645 0.90949 0.87929 1.86649 1.76830 1.17405 1.55590 1.22593 0.87988 1.01927 0.96325 1.60184 1.05598 1.48946 1.17440 1.22462 0.94056 1.01955 0.90045 1.21681 0.91122 0.87906 0.92704 0.92039 1.86659 1.78560 1.16227 1.54877 1.22785 0.88827 1.01068 0.97551 1.61935 1.07186 1.30549 1.26901 1.22248 1.00147 1.00104 0.88430 1.19372 0.95326 0.84188 0.92799 1.21522 0.94005 0.96605 1.43984 0.92072 1.25932 1.03658 0.94978 0.95292 1.70097 1.37869 1.01934 1.47635 0.85326 0.79019 0.78422 0.77790 1.18758 1.20546 1.20175 1.20354 0.92029 0.98312 1.07192 0.91678 0.86520 0.91614 0.83374 0.83174 0.84356 0.76711 0.90268 0.93428 0.83275 0.90427 0.92785 0.77402 0.95417 0.88559 0.90024 0.92726 0.96951 0.97936 1.02362 0.92748 0.85103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.26 16 2 O -0.34 -5.62 10.50 -92.43 -0.97 -6.59 16 3 C 0.11 1.98 6.69 22.51 0.15 2.13 16 4 C -0.21 -2.90 9.04 22.37 0.20 -2.70 16 5 C -0.08 -1.03 10.04 22.25 0.22 -0.80 16 6 C -0.16 -2.34 9.32 22.28 0.21 -2.14 16 7 C -0.08 -1.40 5.00 -19.88 -0.10 -1.50 16 8 C 0.16 2.96 3.42 29.85 0.10 3.06 16 9 H 0.10 1.99 8.05 -2.39 -0.02 1.97 16 10 O -0.56 -12.50 13.00 -148.98 -1.94 -14.43 16 11 C 0.04 0.76 5.33 86.30 0.46 1.22 16 12 N -0.69 -16.58 6.37 -513.88 -3.27 -19.85 16 13 C 0.04 1.08 5.39 86.30 0.47 1.55 16 14 C 0.13 4.16 3.30 30.60 0.10 4.26 16 15 H 0.06 2.66 6.78 -2.39 -0.02 2.64 16 16 O -0.56 -18.25 12.55 -148.98 -1.87 -20.12 16 17 C 0.03 0.91 4.66 86.30 0.40 1.31 16 18 N -0.54 -23.77 4.56 -927.04 -4.22 -28.00 16 19 C 0.04 1.49 9.37 127.69 1.20 2.69 16 20 C 0.21 11.60 4.55 85.56 0.39 11.99 16 21 C -0.52 -30.93 8.39 25.60 0.21 -30.71 16 22 H 0.06 3.57 7.16 -2.91 -0.02 3.55 16 23 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 24 N -0.93 -58.10 13.29 21.45 0.28 -57.81 16 25 Si 0.97 45.93 29.54 68.60 2.03 47.96 16 26 H -0.26 -12.00 7.11 99.48 0.71 -11.29 16 27 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 28 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 29 C -0.16 -2.94 9.62 22.36 0.22 -2.73 16 30 H 0.06 0.38 7.66 -2.39 -0.02 0.36 16 31 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.07 0.37 7.66 -2.39 -0.02 0.35 16 33 H 0.15 1.27 6.30 -2.91 -0.02 1.25 16 34 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 35 H 0.14 1.59 6.61 -2.91 -0.02 1.57 16 36 H 0.38 6.30 7.39 -74.05 -0.55 5.75 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.35 8.52 8.12 -89.70 -0.73 7.79 16 40 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.38 8.66 9.05 -74.06 -0.67 7.99 16 43 H 0.03 0.98 8.00 -2.39 -0.02 0.96 16 44 H 0.10 2.54 7.94 -2.39 -0.02 2.53 16 45 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 46 H 0.05 2.32 6.67 -2.38 -0.02 2.31 16 47 H 0.01 0.45 8.13 -2.38 -0.02 0.43 16 48 H 0.00 0.16 6.63 -2.39 -0.02 0.14 16 49 H -0.04 -2.46 8.12 -2.39 -0.02 -2.48 16 50 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 51 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -76.83 414.05 -5.16 -81.98 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: -1.00 Total: 27.56 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: 5.80 Total: -10.70 kcal Atomic # 7 Polarization: -98.45 SS G_CDS: -7.21 Total: -105.66 kcal Atomic # 8 Polarization: -36.37 SS G_CDS: -4.78 Total: -41.15 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -76.83 -5.16 -81.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843070753.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.143 kcal (2) G-P(sol) polarization free energy of solvation -76.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds