Wall clock time and date at job start Tue Mar 31 2020 21:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46848 * 2 1 4 4 C 1.52996 * 109.47332 * 240.00353 * 2 1 3 5 5 O 1.45203 * 109.47646 * 120.00161 * 2 1 3 6 6 C 1.34633 * 116.99646 * 60.00080 * 5 2 1 7 7 O 1.21511 * 120.00404 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99604 * 180.02562 * 6 5 2 9 9 C 1.46500 * 119.99969 * 179.97438 * 8 6 5 10 10 H 1.09006 * 112.90546 * 23.75230 * 9 8 6 11 11 C 1.53775 * 113.61602 * 155.00058 * 9 8 6 12 12 C 1.53783 * 87.08152 * 89.11668 * 11 9 8 13 13 H 1.09002 * 113.61696 * 270.80054 * 12 11 9 14 14 C 1.50705 * 113.61027 * 139.98063 * 12 11 9 15 15 O 1.21280 * 120.00358 * 352.19766 * 14 12 11 16 16 N 1.34784 * 119.99359 * 172.19890 * 14 12 11 17 17 C 1.46502 * 119.99360 * 184.79986 * 16 14 12 18 18 C 1.53008 * 109.46705 * 185.60012 * 17 16 14 19 19 C 1.50703 * 115.54604 * 32.77170 * 18 17 16 20 20 H 1.08010 * 119.99621 * 266.99847 * 19 18 17 21 21 C 1.37872 * 120.00641 * 86.99865 * 19 18 17 22 22 N 1.31510 * 120.00340 * 178.51840 * 21 19 18 23 23 Si 1.86810 * 119.99564 * 358.52420 * 21 19 18 24 24 H 1.48503 * 109.46813 * 91.05806 * 23 21 19 25 25 H 1.48499 * 109.47010 * 211.05496 * 23 21 19 26 26 H 1.48500 * 109.47066 * 331.05517 * 23 21 19 27 27 C 1.52990 * 117.50008 * 247.05616 * 18 17 16 28 28 C 1.52999 * 60.00307 * 252.51284 * 27 18 17 29 29 C 1.53780 * 87.07991 * 25.43746 * 12 11 9 30 30 H 1.09001 * 109.47219 * 299.99225 * 1 2 3 31 31 H 1.08995 * 109.47508 * 60.00075 * 1 2 3 32 32 H 1.09007 * 109.46564 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47211 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47529 * 300.00194 * 3 2 1 35 35 H 1.08996 * 109.47254 * 60.00554 * 3 2 1 36 36 H 1.09004 * 109.47048 * 299.99940 * 4 2 1 37 37 H 1.09008 * 109.47353 * 59.99441 * 4 2 1 38 38 H 1.09003 * 109.47718 * 179.97438 * 4 2 1 39 39 H 0.97001 * 120.00402 * 0.02562 * 8 6 5 40 40 H 1.09007 * 113.61456 * 334.57439 * 11 9 8 41 41 H 1.08997 * 113.62117 * 203.66835 * 11 9 8 42 42 H 0.96995 * 120.00034 * 4.79208 * 16 14 12 43 43 H 1.08993 * 109.47179 * 305.59987 * 17 16 14 44 44 H 1.09001 * 109.47342 * 65.60523 * 17 16 14 45 45 H 0.97004 * 119.99900 * 180.02562 * 22 21 19 46 46 H 1.09003 * 117.49963 * 0.02562 * 27 18 17 47 47 H 1.09003 * 117.49853 * 145.02297 * 27 18 17 48 48 H 1.08996 * 117.49790 * 252.51745 * 28 27 18 49 49 H 1.08998 * 117.49504 * 107.48994 * 28 27 18 50 50 H 1.08991 * 113.61801 * 89.11228 * 29 12 11 51 51 H 1.09000 * 113.61235 * 219.93574 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2492 5 8 2.0141 -0.6845 1.1855 6 6 1.6524 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0675 -2.6654 2.4170 9 6 1.6735 -4.0666 2.5835 10 1 1.4200 -4.5510 1.6405 11 6 2.6464 -4.8810 3.4524 12 6 1.8055 -4.4451 4.6639 13 1 2.1357 -3.5069 5.1098 14 6 1.6026 -5.5374 5.6822 15 8 1.9619 -6.6695 5.4370 16 7 1.0216 -5.2561 6.8654 17 6 0.9192 -6.2925 7.8958 18 6 0.1022 -5.7602 9.0749 19 6 -0.9924 -4.7869 8.7205 20 1 -0.7965 -3.7248 8.7363 21 6 -2.2438 -5.2520 8.3760 22 7 -3.2069 -4.4018 8.0950 23 14 -2.5710 -7.0900 8.3086 24 1 -3.0599 -7.5545 9.6317 25 1 -3.5986 -7.3721 7.2743 26 1 -1.3149 -7.8042 7.9663 27 6 0.8324 -5.5501 10.4028 28 6 -0.1507 -6.7119 10.2460 29 6 0.6270 -4.2852 3.6890 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7488 -1.2493 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2495 39 1 2.6265 -2.2364 3.0836 40 1 3.6617 -4.4844 3.4602 41 1 2.6113 -5.9532 3.2595 42 1 0.6715 -4.3675 7.0347 43 1 0.4266 -7.1712 7.4796 44 1 1.9176 -6.5639 8.2387 45 1 -4.0875 -4.7291 7.8530 46 1 1.8951 -5.7906 10.4363 47 1 0.5214 -4.7075 11.0204 48 1 -1.1085 -6.6336 10.7603 49 1 0.2651 -7.7171 10.1764 50 1 0.0399 -5.1944 3.5608 51 1 0.0112 -3.4082 3.8887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847008201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:37 Heat of formation + Delta-G solvation = -78.727498 kcal Electronic energy + Delta-G solvation = -29886.857571 eV Core-core repulsion = 25787.792910 eV Total energy + Delta-G solvation = -4099.064661 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.05579 -40.03175 -38.25530 -37.12956 -36.52852 -34.44585 -33.36168 -32.96231 -32.21702 -27.66838 -27.59792 -27.58039 -25.84944 -25.73313 -24.79314 -22.83605 -21.73413 -20.54097 -20.21344 -19.46335 -18.83759 -18.42273 -16.97395 -16.62912 -16.39875 -16.26116 -15.65812 -15.34764 -14.95984 -14.88448 -14.59186 -14.52611 -14.05847 -13.83966 -13.54971 -13.14995 -12.97580 -12.77908 -12.73570 -12.53432 -12.40972 -12.36069 -12.15588 -12.13069 -12.08269 -11.67829 -11.64088 -11.50399 -11.20744 -10.73630 -10.70617 -10.56628 -10.54481 -10.53702 -10.22724 -10.18046 -9.70631 -9.42284 -9.25137 -9.07300 -8.72348 -8.64546 -8.14967 -6.23590 -4.29482 1.98294 2.69870 3.10770 3.24721 3.35576 3.41054 3.83778 3.95209 4.34845 4.38937 4.46698 4.50093 4.55081 4.65569 4.80165 4.84509 4.96829 5.08055 5.20646 5.27221 5.29617 5.43063 5.45392 5.52440 5.59332 5.62367 5.69479 5.70093 5.72962 5.81075 5.85860 5.95036 5.96116 6.03075 6.05361 6.06327 6.15368 6.26422 6.34145 6.41838 6.48116 6.52289 6.67964 6.87770 7.04442 7.22622 7.28041 7.62955 8.25560 8.30264 8.33219 8.75514 8.86395 9.40168 10.86751 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.002416 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.710439 B =11584.893898 C =12213.058672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.137 3.863 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.366 6.366 6 C 0.653 3.347 7 O -0.566 6.566 8 N -0.691 5.691 9 C 0.135 3.865 10 H 0.111 0.889 11 C -0.119 4.119 12 C -0.137 4.137 13 H 0.109 0.891 14 C 0.514 3.486 15 O -0.564 6.564 16 N -0.693 5.693 17 C 0.150 3.850 18 C -0.015 4.015 19 C -0.495 4.495 20 H 0.079 0.921 21 C 0.086 3.914 22 N -0.891 5.891 23 Si 0.877 3.123 24 H -0.278 1.278 25 H -0.294 1.294 26 H -0.255 1.255 27 C -0.179 4.179 28 C -0.197 4.197 29 C -0.131 4.131 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.406 0.594 40 H 0.077 0.923 41 H 0.113 0.887 42 H 0.411 0.589 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.266 0.734 46 H 0.073 0.927 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.099 0.901 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.708 8.501 -14.066 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.280 6.280 6 C 0.406 3.594 7 O -0.455 6.455 8 N -0.350 5.350 9 C 0.031 3.969 10 H 0.129 0.871 11 C -0.158 4.158 12 C -0.158 4.158 13 H 0.127 0.873 14 C 0.299 3.701 15 O -0.444 6.444 16 N -0.343 5.343 17 C 0.026 3.974 18 C -0.017 4.017 19 C -0.532 4.532 20 H 0.097 0.903 21 C -0.118 4.118 22 N -0.527 5.527 23 Si 0.705 3.295 24 H -0.204 1.204 25 H -0.221 1.221 26 H -0.179 1.179 27 C -0.216 4.216 28 C -0.234 4.234 29 C -0.170 4.170 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.242 0.758 40 H 0.095 0.905 41 H 0.131 0.869 42 H 0.249 0.751 43 H 0.080 0.920 44 H 0.063 0.937 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.105 0.895 48 H 0.107 0.893 49 H 0.092 0.908 50 H 0.118 0.882 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 11.403 7.550 -14.736 20.104 hybrid contribution -0.421 -0.299 0.573 0.772 sum 10.982 7.251 -14.163 19.333 Atomic orbital electron populations 1.22527 0.93857 1.05262 1.02566 1.22065 0.94485 0.91451 0.82013 1.21864 1.02167 0.92586 1.03192 1.22521 1.01456 1.03595 0.96487 1.86299 1.71584 1.23628 1.46530 1.18052 0.78694 0.80467 0.82178 1.90903 1.40838 1.70342 1.43448 1.44414 1.55143 1.11985 1.23409 1.21871 0.96275 0.79067 0.99699 0.87142 1.23246 0.97711 1.01987 0.92812 1.22792 0.99543 0.98897 0.94608 0.87327 1.20285 0.77938 0.89302 0.82571 1.90624 1.52705 1.22470 1.78582 1.46011 1.57764 1.16550 1.13953 1.21057 0.97607 0.90325 0.88440 1.19628 0.97906 0.98362 0.85761 1.20122 0.92628 0.92921 1.47564 0.90302 1.24940 0.95750 0.97683 0.93467 1.69880 1.02777 1.34583 1.45459 0.86903 0.78672 0.86288 0.77672 1.20436 1.22075 1.17924 1.22905 0.95380 1.00037 1.03266 1.22952 1.00661 0.93817 1.05999 1.23347 0.96009 1.03877 0.93815 0.91994 0.91190 0.89252 0.91524 0.90171 0.91362 0.89316 0.91186 0.92240 0.75842 0.90480 0.86861 0.75073 0.91958 0.93712 0.92392 0.90874 0.89479 0.89269 0.90799 0.88218 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 2 C 0.14 1.29 1.13 -90.62 -0.10 1.19 16 3 C -0.14 -0.96 8.85 37.16 0.33 -0.63 16 4 C -0.18 -1.65 8.37 37.16 0.31 -1.34 16 5 O -0.37 -4.12 9.94 -40.30 -0.40 -4.52 16 6 C 0.65 8.11 8.06 54.06 0.44 8.54 16 7 O -0.57 -8.27 11.48 -19.28 -0.22 -8.49 16 8 N -0.69 -7.28 5.27 -57.93 -0.31 -7.58 16 9 C 0.14 1.52 4.32 -67.12 -0.29 1.23 16 10 H 0.11 1.33 7.47 -51.93 -0.39 0.94 16 11 C -0.12 -1.33 7.20 -25.92 -0.19 -1.52 16 12 C -0.14 -1.77 4.03 -90.96 -0.37 -2.14 16 13 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 14 C 0.51 9.06 7.34 -10.98 -0.08 8.98 16 15 O -0.56 -11.64 15.85 5.56 0.09 -11.55 16 16 N -0.69 -13.10 5.28 -60.29 -0.32 -13.42 16 17 C 0.15 3.08 5.61 -4.04 -0.02 3.06 16 18 C -0.02 -0.33 1.24 -155.66 -0.19 -0.52 16 19 C -0.50 -12.47 7.80 -34.44 -0.27 -12.73 16 20 H 0.08 2.13 8.06 -52.48 -0.42 1.71 16 21 C 0.09 2.30 5.47 -17.82 -0.10 2.20 16 22 N -0.89 -25.47 13.96 55.43 0.77 -24.70 16 23 Si 0.88 21.16 25.19 -169.99 -4.28 16.88 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 26 H -0.25 -5.98 5.28 56.52 0.30 -5.68 16 27 C -0.18 -3.39 9.88 -26.74 -0.26 -3.66 16 28 C -0.20 -3.99 7.63 -26.73 -0.20 -4.19 16 29 C -0.13 -1.71 7.43 -25.92 -0.19 -1.90 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 1.09 5.88 -51.93 -0.31 0.79 16 33 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 37 H 0.07 0.50 8.14 -51.92 -0.42 0.07 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.41 3.44 8.81 -40.82 -0.36 3.08 16 40 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 41 H 0.11 1.42 7.36 -51.93 -0.38 1.04 16 42 H 0.41 7.69 7.29 -40.82 -0.30 7.39 16 43 H 0.06 1.41 6.32 -51.93 -0.33 1.08 16 44 H 0.04 0.86 7.89 -51.93 -0.41 0.46 16 45 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 46 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 47 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 48 H 0.09 1.90 7.27 -51.93 -0.38 1.53 16 49 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 50 H 0.10 1.41 8.09 -51.93 -0.42 0.99 16 51 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 403.57 15.07 6.08 6.08 Total: -1.00 -30.93 403.57 -8.19 -39.12 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -8.73 Total: 13.09 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -0.88 Total: -4.92 kcal Atomic # 7 Polarization: -45.85 SS G_CDS: 0.15 Total: -45.70 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.53 Total: -24.55 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.28 Total: 16.88 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.93 -8.19 -39.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847008201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.606 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds