Wall clock time and date at job start Tue Mar 31 2020 21:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.46848 * 2 1 4 4 C 1.52996 * 109.47332 * 240.00353 * 2 1 3 5 5 O 1.45203 * 109.47646 * 120.00161 * 2 1 3 6 6 C 1.34633 * 116.99646 * 60.00080 * 5 2 1 7 7 O 1.21511 * 120.00404 * 359.97438 * 6 5 2 8 8 N 1.34780 * 119.99604 * 180.02562 * 6 5 2 9 9 C 1.46500 * 119.99969 * 179.97438 * 8 6 5 10 10 H 1.09006 * 112.90546 * 23.75230 * 9 8 6 11 11 C 1.53775 * 113.61602 * 155.00058 * 9 8 6 12 12 C 1.53783 * 87.08152 * 89.11668 * 11 9 8 13 13 H 1.09002 * 113.61696 * 270.80054 * 12 11 9 14 14 C 1.50705 * 113.61027 * 139.98063 * 12 11 9 15 15 O 1.21280 * 120.00358 * 352.19766 * 14 12 11 16 16 N 1.34784 * 119.99359 * 172.19890 * 14 12 11 17 17 C 1.46502 * 119.99360 * 184.79986 * 16 14 12 18 18 C 1.53008 * 109.46705 * 185.60012 * 17 16 14 19 19 C 1.50703 * 115.54604 * 32.77170 * 18 17 16 20 20 H 1.08010 * 119.99621 * 266.99847 * 19 18 17 21 21 C 1.37872 * 120.00641 * 86.99865 * 19 18 17 22 22 N 1.31510 * 120.00340 * 178.51840 * 21 19 18 23 23 Si 1.86810 * 119.99564 * 358.52420 * 21 19 18 24 24 H 1.48503 * 109.46813 * 91.05806 * 23 21 19 25 25 H 1.48499 * 109.47010 * 211.05496 * 23 21 19 26 26 H 1.48500 * 109.47066 * 331.05517 * 23 21 19 27 27 C 1.52990 * 117.50008 * 247.05616 * 18 17 16 28 28 C 1.52999 * 60.00307 * 252.51284 * 27 18 17 29 29 C 1.53780 * 87.07991 * 25.43746 * 12 11 9 30 30 H 1.09001 * 109.47219 * 299.99225 * 1 2 3 31 31 H 1.08995 * 109.47508 * 60.00075 * 1 2 3 32 32 H 1.09007 * 109.46564 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47211 * 180.02562 * 3 2 1 34 34 H 1.08995 * 109.47529 * 300.00194 * 3 2 1 35 35 H 1.08996 * 109.47254 * 60.00554 * 3 2 1 36 36 H 1.09004 * 109.47048 * 299.99940 * 4 2 1 37 37 H 1.09008 * 109.47353 * 59.99441 * 4 2 1 38 38 H 1.09003 * 109.47718 * 179.97438 * 4 2 1 39 39 H 0.97001 * 120.00402 * 0.02562 * 8 6 5 40 40 H 1.09007 * 113.61456 * 334.57439 * 11 9 8 41 41 H 1.08997 * 113.62117 * 203.66835 * 11 9 8 42 42 H 0.96995 * 120.00034 * 4.79208 * 16 14 12 43 43 H 1.08993 * 109.47179 * 305.59987 * 17 16 14 44 44 H 1.09001 * 109.47342 * 65.60523 * 17 16 14 45 45 H 0.97004 * 119.99900 * 180.02562 * 22 21 19 46 46 H 1.09003 * 117.49963 * 0.02562 * 27 18 17 47 47 H 1.09003 * 117.49853 * 145.02297 * 27 18 17 48 48 H 1.08996 * 117.49790 * 252.51745 * 28 27 18 49 49 H 1.08998 * 117.49504 * 107.48994 * 28 27 18 50 50 H 1.08991 * 113.61801 * 89.11228 * 29 12 11 51 51 H 1.09000 * 113.61235 * 219.93574 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2492 5 8 2.0141 -0.6845 1.1855 6 6 1.6524 -1.9723 1.3382 7 8 0.9510 -2.5095 0.5039 8 7 2.0675 -2.6654 2.4170 9 6 1.6735 -4.0666 2.5835 10 1 1.4200 -4.5510 1.6405 11 6 2.6464 -4.8810 3.4524 12 6 1.8055 -4.4451 4.6639 13 1 2.1357 -3.5069 5.1098 14 6 1.6026 -5.5374 5.6822 15 8 1.9619 -6.6695 5.4370 16 7 1.0216 -5.2561 6.8654 17 6 0.9192 -6.2925 7.8958 18 6 0.1022 -5.7602 9.0749 19 6 -0.9924 -4.7869 8.7205 20 1 -0.7965 -3.7248 8.7363 21 6 -2.2438 -5.2520 8.3760 22 7 -3.2069 -4.4018 8.0950 23 14 -2.5710 -7.0900 8.3086 24 1 -3.0599 -7.5545 9.6317 25 1 -3.5986 -7.3721 7.2743 26 1 -1.3149 -7.8042 7.9663 27 6 0.8324 -5.5501 10.4028 28 6 -0.1507 -6.7119 10.2460 29 6 0.6270 -4.2852 3.6890 30 1 -0.3634 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0278 -0.0005 33 1 3.1300 1.4426 -0.0005 34 1 1.6766 1.9564 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7488 -1.2493 37 1 1.6766 -0.2073 -2.1393 38 1 3.1300 -0.7208 -1.2495 39 1 2.6265 -2.2364 3.0836 40 1 3.6617 -4.4844 3.4602 41 1 2.6113 -5.9532 3.2595 42 1 0.6715 -4.3675 7.0347 43 1 0.4266 -7.1712 7.4796 44 1 1.9176 -6.5639 8.2387 45 1 -4.0875 -4.7291 7.8530 46 1 1.8951 -5.7906 10.4363 47 1 0.5214 -4.7075 11.0204 48 1 -1.1085 -6.6336 10.7603 49 1 0.2651 -7.7171 10.1764 50 1 0.0399 -5.1944 3.5608 51 1 0.0112 -3.4082 3.8887 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847008201.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:02:36 Heat of formation + Delta-G solvation = -99.587000 kcal Electronic energy + Delta-G solvation = -29887.762107 eV Core-core repulsion = 25787.792910 eV Total energy + Delta-G solvation = -4099.969197 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.00807 -41.19559 -39.54002 -38.57007 -37.62480 -35.29413 -34.90608 -34.25404 -33.86795 -29.01403 -28.33524 -28.26420 -27.65662 -26.75466 -26.17673 -23.77620 -23.31948 -21.73504 -21.19506 -21.05941 -20.08458 -19.36654 -18.45338 -18.02075 -17.51484 -17.18048 -17.06827 -16.58389 -16.55949 -16.13081 -15.69338 -15.49134 -15.33861 -14.96190 -14.78643 -14.61147 -14.41196 -14.17999 -14.07903 -13.72851 -13.36502 -13.32267 -13.11265 -13.04135 -12.88748 -12.83439 -12.81195 -12.59952 -12.46842 -12.28699 -12.16249 -12.01788 -11.72746 -11.57954 -11.53620 -11.36686 -11.10055 -11.04786 -10.77487 -10.61077 -10.36426 -10.18482 -9.73419 -8.31880 -6.37578 1.12689 1.30258 1.37809 1.46300 1.69271 1.76251 2.34124 2.44571 3.05088 3.12189 3.20412 3.38819 3.52008 3.77876 3.78590 3.83680 3.89745 3.97706 4.07428 4.25852 4.35824 4.41257 4.45335 4.58331 4.64212 4.64352 4.68390 4.73825 4.79753 4.83299 4.84558 4.87219 4.89851 4.91129 4.92251 4.95736 5.05013 5.08741 5.17660 5.23090 5.31213 5.35038 5.46080 5.49189 5.61407 5.64482 5.75322 6.28496 6.40939 6.70063 6.83599 7.33986 7.35217 7.40418 8.81524 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016026 B = 0.002416 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.710439 B =11584.893898 C =12213.058672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.125 3.875 3 C -0.136 4.136 4 C -0.179 4.179 5 O -0.367 6.367 6 C 0.648 3.352 7 O -0.592 6.592 8 N -0.681 5.681 9 C 0.149 3.851 10 H 0.103 0.897 11 C -0.105 4.105 12 C -0.131 4.131 13 H 0.137 0.863 14 C 0.511 3.489 15 O -0.594 6.594 16 N -0.698 5.698 17 C 0.157 3.843 18 C -0.040 4.040 19 C -0.476 4.476 20 H 0.052 0.948 21 C 0.039 3.961 22 N -0.936 5.936 23 Si 0.919 3.081 24 H -0.270 1.270 25 H -0.306 1.306 26 H -0.243 1.243 27 C -0.154 4.154 28 C -0.198 4.198 29 C -0.136 4.136 30 H 0.058 0.942 31 H 0.090 0.910 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.089 0.911 38 H 0.065 0.935 39 H 0.419 0.581 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.412 0.588 43 H 0.039 0.961 44 H 0.062 0.938 45 H 0.264 0.736 46 H 0.104 0.896 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.096 0.904 50 H 0.082 0.918 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.082 9.085 -14.141 21.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.089 3.911 3 C -0.193 4.193 4 C -0.236 4.236 5 O -0.282 6.282 6 C 0.402 3.598 7 O -0.483 6.483 8 N -0.340 5.340 9 C 0.044 3.956 10 H 0.121 0.879 11 C -0.143 4.143 12 C -0.152 4.152 13 H 0.155 0.845 14 C 0.299 3.701 15 O -0.476 6.476 16 N -0.348 5.348 17 C 0.032 3.968 18 C -0.041 4.041 19 C -0.514 4.514 20 H 0.070 0.930 21 C -0.160 4.160 22 N -0.575 5.575 23 Si 0.746 3.254 24 H -0.196 1.196 25 H -0.233 1.233 26 H -0.167 1.167 27 C -0.191 4.191 28 C -0.236 4.236 29 C -0.176 4.176 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.084 0.916 39 H 0.256 0.744 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.249 0.751 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.123 0.877 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.114 0.886 50 H 0.101 0.899 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 13.813 8.146 -14.785 21.812 hybrid contribution -1.145 -0.412 0.600 1.357 sum 12.668 7.734 -14.185 20.531 Atomic orbital electron populations 1.22495 0.94394 1.03598 1.03490 1.22411 0.94287 0.92821 0.81597 1.21887 1.02568 0.90566 1.04257 1.22470 1.01769 1.02173 0.97201 1.86314 1.71499 1.22878 1.47477 1.18244 0.78469 0.80869 0.82221 1.90902 1.41960 1.70954 1.44463 1.44296 1.54862 1.11548 1.23277 1.21638 0.95555 0.79562 0.98812 0.87856 1.23147 0.98851 1.01271 0.91035 1.22911 1.00007 0.98562 0.93682 0.84485 1.21019 0.76665 0.89914 0.82547 1.90607 1.53815 1.24100 1.79050 1.46065 1.58154 1.16185 1.14393 1.20904 0.97917 0.89843 0.88119 1.19549 0.98237 0.99107 0.87252 1.20253 0.93281 0.92535 1.45319 0.92972 1.25537 0.95999 1.00514 0.93973 1.69990 1.03257 1.36083 1.48184 0.86211 0.78579 0.83042 0.77536 1.19595 1.23339 1.16704 1.22951 0.96800 0.99109 1.00205 1.22998 1.00804 0.95263 1.04508 1.23338 0.96333 1.02881 0.95010 0.92269 0.89084 0.92109 0.90888 0.88017 0.91399 0.91992 0.89176 0.91626 0.74350 0.87733 0.88113 0.75069 0.94306 0.91943 0.92716 0.87735 0.89731 0.90634 0.88596 0.89896 0.90483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.45 8.37 71.98 0.60 -2.85 16 2 C 0.13 2.20 1.13 -10.80 -0.01 2.19 16 3 C -0.14 -1.53 8.85 71.98 0.64 -0.89 16 4 C -0.18 -3.00 8.37 71.98 0.60 -2.40 16 5 O -0.37 -7.88 9.94 -55.42 -0.55 -8.43 16 6 C 0.65 15.76 8.06 129.79 1.05 16.81 16 7 O -0.59 -17.53 11.48 19.81 0.23 -17.30 16 8 N -0.68 -13.41 5.27 -567.60 -2.99 -16.40 16 9 C 0.15 3.23 4.32 45.52 0.20 3.43 16 10 H 0.10 2.47 7.47 -2.38 -0.02 2.45 16 11 C -0.10 -2.15 7.20 31.12 0.22 -1.92 16 12 C -0.13 -3.19 4.03 -11.01 -0.04 -3.24 16 13 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 14 C 0.51 17.56 7.34 87.66 0.64 18.21 16 15 O -0.59 -24.10 15.85 -3.03 -0.05 -24.14 16 16 N -0.70 -25.82 5.28 -463.03 -2.45 -28.27 16 17 C 0.16 6.21 5.61 86.38 0.48 6.69 16 18 C -0.04 -1.68 1.24 -52.93 -0.07 -1.74 16 19 C -0.48 -24.04 7.80 25.60 0.20 -23.84 16 20 H 0.05 2.87 8.06 -2.91 -0.02 2.84 16 21 C 0.04 2.12 5.47 84.65 0.46 2.58 16 22 N -0.94 -54.96 13.96 21.44 0.30 -54.66 16 23 Si 0.92 43.75 25.19 68.60 1.73 45.48 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 H -0.31 -15.04 7.11 99.48 0.71 -14.33 16 26 H -0.24 -11.04 5.28 99.48 0.53 -10.52 16 27 C -0.15 -5.38 9.88 30.59 0.30 -5.08 16 28 C -0.20 -7.56 7.63 30.59 0.23 -7.32 16 29 C -0.14 -3.54 7.43 31.12 0.23 -3.31 16 30 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.52 5.88 -2.38 -0.01 1.51 16 33 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 1.41 5.88 -2.39 -0.01 1.39 16 37 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.42 6.12 8.81 -92.71 -0.82 5.30 16 40 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.10 2.42 7.36 -2.39 -0.02 2.40 16 42 H 0.41 15.20 7.29 -92.71 -0.68 14.53 16 43 H 0.04 1.71 6.32 -2.39 -0.02 1.70 16 44 H 0.06 2.25 7.89 -2.39 -0.02 2.23 16 45 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 46 H 0.10 3.05 8.04 -2.39 -0.02 3.03 16 47 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 48 H 0.08 3.09 7.27 -2.39 -0.02 3.08 16 49 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 50 H 0.08 2.43 8.09 -2.39 -0.02 2.42 16 51 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 Total: -1.00 -68.19 403.57 1.23 -66.96 By element: Atomic # 1 Polarization: 40.19 SS G_CDS: -0.73 Total: 39.45 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 5.74 Total: -2.69 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -5.14 Total: -99.33 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -0.37 Total: -49.87 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 1.73 Total: 45.48 kcal Total: -68.19 1.23 -66.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847008201.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.626 kcal (2) G-P(sol) polarization free energy of solvation -68.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds