Wall clock time and date at job start Tue Mar 31 2020 20:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45196 * 109.46936 * 2 1 4 4 C 1.34643 * 116.99672 * 179.97438 * 3 2 1 5 5 O 1.21507 * 120.00220 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99434 * 180.27646 * 4 3 2 7 7 C 1.46918 * 120.63331 * 359.43941 * 6 4 3 8 8 C 1.52762 * 109.00914 * 233.58479 * 7 6 4 9 9 C 1.53032 * 109.38621 * 305.58974 * 8 7 6 10 10 C 1.50704 * 109.46178 * 181.25807 * 9 8 7 11 11 O 1.21273 * 119.99697 * 325.24408 * 10 9 8 12 12 N 1.34774 * 119.99808 * 145.23922 * 10 9 8 13 13 C 1.46938 * 120.63197 * 5.42010 * 12 10 9 14 14 C 1.53193 * 108.77460 * 126.36620 * 13 12 10 15 15 C 1.53041 * 109.31347 * 54.63489 * 14 13 12 16 16 C 1.53041 * 109.53696 * 298.63157 * 15 14 13 17 17 H 1.08999 * 109.49947 * 301.41679 * 16 15 14 18 18 C 1.50695 * 109.49773 * 181.34893 * 16 15 14 19 19 H 1.07999 * 120.00695 * 240.00396 * 18 16 15 20 20 C 1.37885 * 119.99967 * 60.00036 * 18 16 15 21 21 N 1.31513 * 119.99861 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00076 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47183 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47277 * 120.00033 * 22 20 18 25 25 H 1.48502 * 109.46954 * 240.00059 * 22 20 18 26 26 C 1.46923 * 120.63056 * 185.13135 * 12 10 9 27 27 C 1.53045 * 109.53661 * 61.23801 * 9 8 7 28 28 C 1.46928 * 120.62418 * 179.72525 * 6 4 3 29 29 H 1.09003 * 109.47112 * 60.00444 * 1 2 3 30 30 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47290 * 300.00308 * 1 2 3 32 32 H 1.08995 * 109.47290 * 239.99692 * 2 1 3 33 33 H 1.09001 * 109.46772 * 119.99967 * 2 1 3 34 34 H 1.08995 * 109.59050 * 353.42558 * 7 6 4 35 35 H 1.09003 * 109.58373 * 113.84552 * 7 6 4 36 36 H 1.09003 * 109.56037 * 185.55327 * 8 7 6 37 37 H 1.09003 * 109.38673 * 65.52147 * 8 7 6 38 38 H 1.09004 * 109.46157 * 301.21893 * 9 8 7 39 39 H 1.08994 * 109.58297 * 246.15020 * 13 12 10 40 40 H 1.08996 * 109.58185 * 6.58008 * 13 12 10 41 41 H 1.08999 * 109.49581 * 174.58897 * 14 13 12 42 42 H 1.09000 * 109.49358 * 294.65151 * 14 13 12 43 43 H 1.08990 * 109.46127 * 58.65354 * 15 14 13 44 44 H 1.08998 * 109.45610 * 178.61535 * 15 14 13 45 45 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58577 * 353.42738 * 26 12 10 47 47 H 1.09007 * 109.58643 * 113.84759 * 26 12 10 48 48 H 1.09002 * 109.49454 * 178.68259 * 27 9 8 49 49 H 1.09000 * 109.49435 * 58.58710 * 27 9 8 50 50 H 1.08997 * 109.58480 * 246.15075 * 28 6 4 51 51 H 1.08991 * 109.58846 * 6.57846 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5817 0.0015 6 7 3.8639 2.7908 0.0062 7 6 2.9818 3.9657 -0.0005 8 6 3.3790 4.8794 -1.1586 9 6 4.8690 5.2123 -1.0549 10 6 5.2559 6.1386 -2.1790 11 8 4.7282 6.0273 -3.2652 12 7 6.1883 7.0906 -1.9770 13 6 6.9211 7.1630 -0.7055 14 6 8.4242 7.1571 -1.0016 15 6 8.7515 8.2867 -1.9810 16 6 7.9996 8.0593 -3.2944 17 1 8.2837 7.0942 -3.7139 18 6 8.3482 9.1540 -4.2696 19 1 7.5729 9.7962 -4.6605 20 6 9.6572 9.3358 -4.6628 21 7 10.6014 8.5536 -4.1872 22 14 10.0895 10.6932 -5.8711 23 1 8.8563 11.4267 -6.2536 24 1 11.0487 11.6332 -5.2373 25 1 10.7072 10.0984 -7.0835 26 6 6.4957 8.0719 -3.0264 27 6 5.6892 3.9238 -1.1508 28 6 5.3183 2.9992 0.0129 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9477 3.6456 -0.1275 35 1 3.0862 4.5063 0.9402 36 1 2.7965 5.7997 -1.1136 37 1 3.1844 4.3716 -2.1033 38 1 5.0670 5.6985 -0.0996 39 1 6.6554 8.0816 -0.1824 40 1 6.6670 6.3016 -0.0878 41 1 8.9781 7.3070 -0.0750 42 1 8.7043 6.2003 -1.4423 43 1 8.4485 9.2406 -1.5495 44 1 9.8241 8.3001 -2.1743 45 1 11.5222 8.6813 -4.4641 46 1 5.9610 7.8102 -3.9394 47 1 6.1946 9.0662 -2.6964 48 1 6.7513 4.1640 -1.1004 49 1 5.4731 3.4245 -2.0953 50 1 5.6171 3.4595 0.9547 51 1 5.8252 2.0417 -0.1053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855259474.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:00 Heat of formation + Delta-G solvation = -128.694722 kcal Electronic energy + Delta-G solvation = -30520.325328 eV Core-core repulsion = 26419.093926 eV Total energy + Delta-G solvation = -4101.231402 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.95936 -39.98397 -38.15340 -36.85449 -36.35917 -33.73958 -33.11989 -31.88661 -31.38944 -31.25156 -30.20894 -26.70506 -25.10738 -24.45498 -23.83896 -23.21046 -21.99382 -21.64425 -20.41615 -19.65236 -18.50386 -18.02747 -17.23146 -17.01510 -16.86144 -16.21683 -15.35447 -15.18105 -14.96944 -14.87998 -14.58353 -14.17397 -13.96922 -13.69778 -13.54995 -13.41707 -13.20828 -13.11676 -12.81410 -12.75904 -12.55329 -12.22555 -12.06514 -12.05956 -11.90704 -11.87673 -11.47466 -11.06130 -10.99085 -10.89705 -10.79884 -10.79323 -10.67738 -10.59530 -10.28998 -9.97357 -9.83083 -9.49867 -9.31840 -8.99029 -8.80997 -8.41259 -7.92673 -6.04219 -4.11211 1.87297 2.60364 2.97028 3.27154 3.35409 3.38826 3.47561 3.57712 4.40602 4.45653 4.59935 4.61614 4.65253 4.65966 4.82393 4.95191 4.97949 5.05562 5.12803 5.23077 5.25369 5.32131 5.41119 5.43656 5.49133 5.52300 5.57525 5.60147 5.62362 5.73134 5.75377 5.98222 6.07571 6.11828 6.15716 6.21751 6.29617 6.37038 6.45350 6.63070 6.78144 6.94952 7.07701 7.13487 7.30589 7.67001 7.89059 7.98824 8.05179 8.05449 8.35115 8.61685 8.92727 9.53839 11.01316 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.002213 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.864967 B =12649.391465 C =12909.514278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.081 3.919 3 O -0.370 6.370 4 C 0.652 3.348 5 O -0.575 6.575 6 N -0.593 5.593 7 C 0.114 3.886 8 C -0.118 4.118 9 C -0.108 4.108 10 C 0.514 3.486 11 O -0.549 6.549 12 N -0.602 5.602 13 C 0.107 3.893 14 C -0.135 4.135 15 C -0.112 4.112 16 C 0.040 3.960 17 H 0.028 0.972 18 C -0.513 4.513 19 H 0.057 0.943 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.116 3.884 27 C -0.125 4.125 28 C 0.130 3.870 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.035 0.965 44 H 0.096 0.904 45 H 0.260 0.740 46 H 0.078 0.922 47 H 0.054 0.946 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.076 0.924 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.747 -11.949 14.260 24.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 O -0.284 6.284 4 C 0.406 3.594 5 O -0.465 6.465 6 N -0.333 5.333 7 C -0.008 4.008 8 C -0.157 4.157 9 C -0.130 4.130 10 C 0.301 3.699 11 O -0.427 6.427 12 N -0.334 5.334 13 C -0.016 4.016 14 C -0.173 4.173 15 C -0.150 4.150 16 C 0.020 3.980 17 H 0.047 0.953 18 C -0.552 4.552 19 H 0.075 0.925 20 C -0.139 4.139 21 N -0.527 5.527 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.005 4.005 27 C -0.163 4.163 28 C 0.009 3.991 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.054 0.946 44 H 0.114 0.886 45 H 0.070 0.930 46 H 0.097 0.903 47 H 0.073 0.927 48 H 0.106 0.894 49 H 0.096 0.904 50 H 0.094 0.906 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -15.669 -12.373 13.671 24.197 hybrid contribution 0.524 0.778 -0.610 1.118 sum -15.145 -11.595 13.061 23.118 Atomic orbital electron populations 1.21828 0.92540 1.03062 1.03573 1.22948 0.94804 0.78789 1.02773 1.86226 1.22117 1.33084 1.87006 1.17969 0.81156 0.84006 0.76239 1.90986 1.59817 1.39390 1.56267 1.46956 1.07547 1.03059 1.75767 1.21692 0.94442 0.85807 0.98888 1.21719 0.94314 1.00131 0.99524 1.21351 0.96820 0.95973 0.98841 1.20381 0.79536 0.80907 0.89102 1.90661 1.54872 1.71060 1.26109 1.48333 1.37216 1.30994 1.16848 1.21799 0.93500 1.01129 0.85161 1.22003 0.93403 1.01718 1.00157 1.21627 1.04926 0.93963 0.94532 1.18887 0.87849 0.97840 0.93379 0.95340 1.21109 0.93148 1.15686 1.25244 0.92451 1.24944 0.96475 0.96210 0.96250 1.69878 1.00735 1.38287 1.43820 0.86523 0.78433 0.81925 0.81055 1.19736 1.21043 1.21029 1.21906 0.99975 0.89114 0.89457 1.21903 1.00484 0.94246 0.99716 1.21684 0.77473 1.01400 0.98525 0.91380 0.90022 0.91495 0.91161 0.91236 0.88716 0.90929 0.90068 0.90064 0.88869 0.91970 0.90961 0.92428 0.92367 0.94602 0.88618 0.93025 0.90349 0.92729 0.89414 0.90360 0.90562 0.88166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.29 37.16 0.38 -0.44 16 2 C 0.08 0.67 6.19 37.16 0.23 0.90 16 3 O -0.37 -3.96 8.86 -40.33 -0.36 -4.31 16 4 C 0.65 8.19 8.43 54.06 0.46 8.65 16 5 O -0.58 -8.78 15.54 -19.28 -0.30 -9.08 16 6 N -0.59 -6.37 2.98 -178.83 -0.53 -6.90 16 7 C 0.11 1.00 6.42 -3.94 -0.03 0.97 16 8 C -0.12 -1.27 4.98 -26.84 -0.13 -1.40 16 9 C -0.11 -1.29 1.69 -91.73 -0.15 -1.44 16 10 C 0.51 8.71 6.69 -10.98 -0.07 8.63 16 11 O -0.55 -11.49 15.71 5.56 0.09 -11.40 16 12 N -0.60 -10.57 2.98 -173.03 -0.52 -11.08 16 13 C 0.11 1.53 6.15 -3.70 -0.02 1.51 16 14 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 15 C -0.11 -2.45 4.96 -26.69 -0.13 -2.58 16 16 C 0.04 0.96 2.24 -91.88 -0.21 0.75 16 17 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 18 C -0.51 -13.76 8.57 -34.44 -0.30 -14.06 16 19 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.60 16 21 N -0.89 -24.73 11.31 55.43 0.63 -24.11 16 22 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.12 2.46 5.64 -3.93 -0.02 2.44 16 27 C -0.12 -1.43 5.25 -26.61 -0.14 -1.57 16 28 C 0.13 1.30 6.44 -3.71 -0.02 1.28 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.09 0.78 6.93 -51.93 -0.36 0.42 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.05 7.90 -51.93 -0.41 0.64 16 38 H 0.09 0.90 6.19 -51.93 -0.32 0.58 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 0.79 5.44 -51.93 -0.28 0.51 16 41 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.10 2.39 6.04 -51.93 -0.31 2.07 16 45 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 46 H 0.08 1.80 7.00 -51.93 -0.36 1.44 16 47 H 0.05 1.12 8.14 -51.92 -0.42 0.70 16 48 H 0.09 0.98 8.04 -51.93 -0.42 0.56 16 49 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 50 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.10 1.10 7.00 -51.93 -0.36 0.74 16 LS Contribution 396.27 15.07 5.97 5.97 Total: -1.00 -32.61 396.27 -9.17 -41.78 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -8.71 Total: 0.35 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -0.42 Total: 2.82 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: -0.42 Total: -42.09 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.57 Total: -24.80 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.61 -9.17 -41.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855259474.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.914 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds