Wall clock time and date at job start Tue Mar 31 2020 20:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45196 * 109.46936 * 2 1 4 4 C 1.34643 * 116.99672 * 179.97438 * 3 2 1 5 5 O 1.21507 * 120.00220 * 359.97438 * 4 3 2 6 6 N 1.34779 * 119.99434 * 180.27646 * 4 3 2 7 7 C 1.46918 * 120.63331 * 359.43941 * 6 4 3 8 8 C 1.52762 * 109.00914 * 233.58479 * 7 6 4 9 9 C 1.53032 * 109.38621 * 305.58974 * 8 7 6 10 10 C 1.50704 * 109.46178 * 181.25807 * 9 8 7 11 11 O 1.21273 * 119.99697 * 325.24408 * 10 9 8 12 12 N 1.34774 * 119.99808 * 145.23922 * 10 9 8 13 13 C 1.46938 * 120.63197 * 5.42010 * 12 10 9 14 14 C 1.53193 * 108.77460 * 126.36620 * 13 12 10 15 15 C 1.53041 * 109.31347 * 54.63489 * 14 13 12 16 16 C 1.53041 * 109.53696 * 298.63157 * 15 14 13 17 17 H 1.08999 * 109.49947 * 301.41679 * 16 15 14 18 18 C 1.50695 * 109.49773 * 181.34893 * 16 15 14 19 19 H 1.07999 * 120.00695 * 240.00396 * 18 16 15 20 20 C 1.37885 * 119.99967 * 60.00036 * 18 16 15 21 21 N 1.31513 * 119.99861 * 0.02562 * 20 18 16 22 22 Si 1.86800 * 120.00076 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47183 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.47277 * 120.00033 * 22 20 18 25 25 H 1.48502 * 109.46954 * 240.00059 * 22 20 18 26 26 C 1.46923 * 120.63056 * 185.13135 * 12 10 9 27 27 C 1.53045 * 109.53661 * 61.23801 * 9 8 7 28 28 C 1.46928 * 120.62418 * 179.72525 * 6 4 3 29 29 H 1.09003 * 109.47112 * 60.00444 * 1 2 3 30 30 H 1.08998 * 109.47062 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47290 * 300.00308 * 1 2 3 32 32 H 1.08995 * 109.47290 * 239.99692 * 2 1 3 33 33 H 1.09001 * 109.46772 * 119.99967 * 2 1 3 34 34 H 1.08995 * 109.59050 * 353.42558 * 7 6 4 35 35 H 1.09003 * 109.58373 * 113.84552 * 7 6 4 36 36 H 1.09003 * 109.56037 * 185.55327 * 8 7 6 37 37 H 1.09003 * 109.38673 * 65.52147 * 8 7 6 38 38 H 1.09004 * 109.46157 * 301.21893 * 9 8 7 39 39 H 1.08994 * 109.58297 * 246.15020 * 13 12 10 40 40 H 1.08996 * 109.58185 * 6.58008 * 13 12 10 41 41 H 1.08999 * 109.49581 * 174.58897 * 14 13 12 42 42 H 1.09000 * 109.49358 * 294.65151 * 14 13 12 43 43 H 1.08990 * 109.46127 * 58.65354 * 15 14 13 44 44 H 1.08998 * 109.45610 * 178.61535 * 15 14 13 45 45 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.58577 * 353.42738 * 26 12 10 47 47 H 1.09007 * 109.58643 * 113.84759 * 26 12 10 48 48 H 1.09002 * 109.49454 * 178.68259 * 27 9 8 49 49 H 1.09000 * 109.49435 * 58.58710 * 27 9 8 50 50 H 1.08997 * 109.58480 * 246.15075 * 28 6 4 51 51 H 1.08991 * 109.58846 * 6.57846 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0890 0.5817 0.0015 6 7 3.8639 2.7908 0.0062 7 6 2.9818 3.9657 -0.0005 8 6 3.3790 4.8794 -1.1586 9 6 4.8690 5.2123 -1.0549 10 6 5.2559 6.1386 -2.1790 11 8 4.7282 6.0273 -3.2652 12 7 6.1883 7.0906 -1.9770 13 6 6.9211 7.1630 -0.7055 14 6 8.4242 7.1571 -1.0016 15 6 8.7515 8.2867 -1.9810 16 6 7.9996 8.0593 -3.2944 17 1 8.2837 7.0942 -3.7139 18 6 8.3482 9.1540 -4.2696 19 1 7.5729 9.7962 -4.6605 20 6 9.6572 9.3358 -4.6628 21 7 10.6014 8.5536 -4.1872 22 14 10.0895 10.6932 -5.8711 23 1 8.8563 11.4267 -6.2536 24 1 11.0487 11.6332 -5.2373 25 1 10.7072 10.0984 -7.0835 26 6 6.4957 8.0719 -3.0264 27 6 5.6892 3.9238 -1.1508 28 6 5.3183 2.9992 0.0129 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9477 3.6456 -0.1275 35 1 3.0862 4.5063 0.9402 36 1 2.7965 5.7997 -1.1136 37 1 3.1844 4.3716 -2.1033 38 1 5.0670 5.6985 -0.0996 39 1 6.6554 8.0816 -0.1824 40 1 6.6670 6.3016 -0.0878 41 1 8.9781 7.3070 -0.0750 42 1 8.7043 6.2003 -1.4423 43 1 8.4485 9.2406 -1.5495 44 1 9.8241 8.3001 -2.1743 45 1 11.5222 8.6813 -4.4641 46 1 5.9610 7.8102 -3.9394 47 1 6.1946 9.0662 -2.6964 48 1 6.7513 4.1640 -1.1004 49 1 5.4731 3.4245 -2.0953 50 1 5.6171 3.4595 0.9547 51 1 5.8252 2.0417 -0.1053 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855259474.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:55:59 Heat of formation + Delta-G solvation = -148.536900 kcal Electronic energy + Delta-G solvation = -30521.185750 eV Core-core repulsion = 26419.093926 eV Total energy + Delta-G solvation = -4102.091823 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.90541 -41.21625 -39.18484 -38.25590 -37.37426 -35.41847 -34.29060 -32.97160 -32.53510 -32.12403 -31.83021 -27.87587 -26.88648 -25.77679 -24.65018 -23.97722 -23.37444 -22.80234 -21.59927 -20.88685 -19.74097 -19.04972 -18.63322 -18.09611 -17.93577 -17.69697 -16.78276 -16.56521 -16.09354 -15.91061 -15.68338 -15.22169 -15.10417 -15.02822 -14.73327 -14.64055 -14.42335 -14.25350 -14.01566 -13.73436 -13.60949 -13.55429 -13.25240 -13.06460 -12.90225 -12.86639 -12.67733 -12.56369 -12.50512 -12.30297 -12.05173 -11.85815 -11.83923 -11.67909 -11.55840 -11.52398 -11.47521 -11.23182 -10.84562 -10.61589 -10.42316 -9.84147 -9.46193 -8.11689 -6.26681 1.09087 1.38227 1.40766 1.51729 1.63300 1.68358 2.12985 2.42816 2.83434 3.14733 3.44681 3.67147 3.74864 3.98438 4.02096 4.04059 4.10934 4.19577 4.27274 4.30376 4.35145 4.35613 4.39202 4.55376 4.61424 4.64460 4.67595 4.73024 4.74590 4.80463 4.84902 4.89956 4.94877 4.95034 5.01215 5.08335 5.15459 5.15616 5.26189 5.32153 5.39580 5.43091 5.50417 5.59428 5.61799 5.94117 6.15553 6.21841 6.34767 6.60731 6.83553 7.15975 7.25538 7.41469 8.91881 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027448 B = 0.002213 C = 0.002168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.864967 B =12649.391465 C =12909.514278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.073 3.927 3 O -0.370 6.370 4 C 0.645 3.355 5 O -0.610 6.610 6 N -0.592 5.592 7 C 0.120 3.880 8 C -0.114 4.114 9 C -0.096 4.096 10 C 0.507 3.493 11 O -0.598 6.598 12 N -0.606 5.606 13 C 0.107 3.893 14 C -0.128 4.128 15 C -0.106 4.106 16 C 0.041 3.959 17 H -0.018 1.018 18 C -0.537 4.537 19 H 0.051 0.949 20 C 0.015 3.985 21 N -0.912 5.912 22 Si 0.954 3.046 23 H -0.269 1.269 24 H -0.275 1.275 25 H -0.284 1.284 26 C 0.129 3.871 27 C -0.120 4.120 28 C 0.135 3.865 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.109 0.891 36 H 0.092 0.908 37 H 0.048 0.952 38 H 0.134 0.866 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.043 0.957 43 H 0.038 0.962 44 H 0.060 0.940 45 H 0.261 0.739 46 H 0.048 0.952 47 H 0.063 0.937 48 H 0.093 0.907 49 H 0.045 0.955 50 H 0.115 0.885 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.953 -11.468 17.428 26.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.001 4.001 3 O -0.284 6.284 4 C 0.400 3.600 5 O -0.502 6.502 6 N -0.332 5.332 7 C -0.001 4.001 8 C -0.153 4.153 9 C -0.117 4.117 10 C 0.297 3.703 11 O -0.480 6.480 12 N -0.337 5.337 13 C -0.014 4.014 14 C -0.166 4.166 15 C -0.145 4.145 16 C 0.022 3.978 17 H 0.000 1.000 18 C -0.575 4.575 19 H 0.070 0.930 20 C -0.184 4.184 21 N -0.552 5.552 22 Si 0.780 3.220 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.210 1.210 26 C 0.006 3.994 27 C -0.159 4.159 28 C 0.014 3.986 29 H 0.084 0.916 30 H 0.120 0.880 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.119 0.881 35 H 0.127 0.873 36 H 0.110 0.890 37 H 0.067 0.933 38 H 0.152 0.848 39 H 0.104 0.896 40 H 0.137 0.863 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.066 0.934 47 H 0.081 0.919 48 H 0.112 0.888 49 H 0.064 0.936 50 H 0.132 0.868 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -16.889 -11.880 16.872 26.665 hybrid contribution 0.899 0.602 -1.684 2.001 sum -15.991 -11.278 15.188 24.771 Atomic orbital electron populations 1.21835 0.90105 1.04482 1.03753 1.23214 0.96642 0.77808 1.02437 1.86241 1.21047 1.34419 1.86669 1.18225 0.81520 0.84233 0.76001 1.90958 1.60676 1.40653 1.57958 1.47134 1.08157 1.03062 1.74873 1.21816 0.94301 0.84696 0.99333 1.21686 0.93701 1.00805 0.99074 1.21401 0.97454 0.94785 0.98040 1.21366 0.78451 0.80675 0.89793 1.90642 1.56494 1.72194 1.28626 1.48419 1.37789 1.30348 1.17126 1.22078 0.90896 1.04492 0.83947 1.21917 0.96099 0.98606 0.99972 1.21418 1.02168 0.96313 0.94552 1.18791 0.90306 0.94510 0.94237 1.00016 1.21479 0.93341 1.16424 1.26278 0.93043 1.25696 0.96439 0.98358 0.97870 1.70014 1.00926 1.39516 1.44702 0.85562 0.78247 0.79372 0.78813 1.19308 1.20052 1.21045 1.21433 0.97321 0.90645 0.89973 1.21849 1.00791 0.94137 0.99082 1.21731 0.77082 1.00563 0.99228 0.91575 0.87984 0.90844 0.92066 0.91121 0.88130 0.87324 0.88965 0.93290 0.84795 0.89631 0.86313 0.89009 0.93809 0.94299 0.92143 0.92976 0.93353 0.91864 0.88847 0.93635 0.86752 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 10.29 71.98 0.74 -0.56 16 2 C 0.07 1.15 6.19 71.98 0.45 1.59 16 3 O -0.37 -7.48 8.86 -55.53 -0.49 -7.97 16 4 C 0.65 15.54 8.43 129.79 1.09 16.63 16 5 O -0.61 -18.55 15.54 19.82 0.31 -18.24 16 6 N -0.59 -11.33 2.98 -950.11 -2.83 -14.16 16 7 C 0.12 1.67 6.42 86.22 0.55 2.23 16 8 C -0.11 -2.20 4.98 30.53 0.15 -2.05 16 9 C -0.10 -2.00 1.69 -11.51 -0.02 -2.02 16 10 C 0.51 16.83 6.69 87.66 0.59 17.42 16 11 O -0.60 -25.91 15.71 -3.01 -0.05 -25.96 16 12 N -0.61 -20.56 2.98 -819.73 -2.44 -23.01 16 13 C 0.11 2.65 6.15 86.36 0.53 3.18 16 14 C -0.13 -4.03 6.08 30.67 0.19 -3.84 16 15 C -0.11 -4.65 4.96 30.62 0.15 -4.50 16 16 C 0.04 2.05 2.24 -11.61 -0.03 2.02 16 17 H -0.02 -1.08 8.14 -2.39 -0.02 -1.09 16 18 C -0.54 -29.80 8.57 25.60 0.22 -29.58 16 19 H 0.05 2.83 7.75 -2.91 -0.02 2.81 16 20 C 0.02 0.86 5.30 84.66 0.45 1.30 16 21 N -0.91 -52.29 11.31 21.45 0.24 -52.05 16 22 Si 0.95 43.80 29.54 68.60 2.03 45.83 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 25 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 26 C 0.13 5.59 5.64 86.22 0.49 6.08 16 27 C -0.12 -2.53 5.25 30.67 0.16 -2.37 16 28 C 0.13 2.32 6.44 86.36 0.56 2.87 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.10 1.35 6.93 -2.39 -0.02 1.33 16 35 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.05 1.27 7.90 -2.39 -0.02 1.25 16 38 H 0.13 1.76 6.19 -2.38 -0.01 1.74 16 39 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.12 1.88 5.44 -2.39 -0.01 1.87 16 41 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 3.08 6.04 -2.39 -0.01 3.07 16 45 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 46 H 0.05 2.35 7.00 -2.39 -0.02 2.33 16 47 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 48 H 0.09 1.88 8.04 -2.39 -0.02 1.86 16 49 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 50 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.09 1.79 7.00 -2.39 -0.02 1.77 16 Total: -1.00 -77.42 396.27 3.94 -73.48 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 0.91 Total: 13.68 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: 6.27 Total: 8.40 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -5.03 Total: -89.21 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -0.23 Total: -52.17 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -77.42 3.94 -73.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855259474.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.059 kcal (2) G-P(sol) polarization free energy of solvation -77.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds