Wall clock time and date at job start Tue Mar 31 2020 20:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47355 * 2 1 4 4 C 1.34637 * 117.00274 * 180.02562 * 3 2 1 5 5 O 1.21507 * 120.00037 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00273 * 180.02562 * 4 3 2 7 7 C 1.46924 * 120.63021 * 359.96696 * 6 4 3 8 8 C 1.53190 * 108.77506 * 126.41750 * 7 6 4 9 9 C 1.53038 * 109.33755 * 54.62005 * 8 7 6 10 10 C 1.53040 * 109.54166 * 298.68381 * 9 8 7 11 11 H 1.09000 * 109.49708 * 301.35083 * 10 9 8 12 12 C 1.50702 * 109.49891 * 181.28165 * 10 9 8 13 13 O 1.21276 * 120.00057 * 274.82572 * 12 10 9 14 14 N 1.34779 * 119.99911 * 94.82344 * 12 10 9 15 15 C 1.46925 * 120.62961 * 354.59149 * 14 12 10 16 16 C 1.53192 * 108.77428 * 233.60736 * 15 14 12 17 17 C 1.53043 * 109.31334 * 305.36251 * 16 15 14 18 18 C 1.53044 * 109.53411 * 61.36647 * 17 16 15 19 19 H 1.08995 * 109.50066 * 58.62044 * 18 17 16 20 20 C 1.50698 * 109.49510 * 178.68619 * 18 17 16 21 21 H 1.08001 * 120.00062 * 119.93347 * 20 18 17 22 22 C 1.37881 * 120.00038 * 299.93179 * 20 18 17 23 23 N 1.31519 * 119.99708 * 0.02562 * 22 20 18 24 24 Si 1.86796 * 120.00213 * 179.72415 * 22 20 18 25 25 H 1.48497 * 109.47046 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46961 * 119.99985 * 24 22 20 27 27 H 1.48495 * 109.47652 * 240.00006 * 24 22 20 28 28 C 1.46929 * 120.60754 * 174.60685 * 14 12 10 29 29 C 1.46924 * 120.63215 * 180.02562 * 6 4 3 30 30 H 1.09000 * 109.46848 * 59.99985 * 1 2 3 31 31 H 1.08992 * 109.47222 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46626 * 300.00580 * 1 2 3 33 33 H 1.09004 * 109.47275 * 240.00057 * 2 1 3 34 34 H 1.09002 * 109.47310 * 120.00227 * 2 1 3 35 35 H 1.09001 * 109.59109 * 246.20670 * 7 6 4 36 36 H 1.08996 * 109.58542 * 6.63320 * 7 6 4 37 37 H 1.08994 * 109.50208 * 174.58687 * 8 7 6 38 38 H 1.08999 * 109.50148 * 294.65593 * 8 7 6 39 39 H 1.09001 * 109.48786 * 178.64816 * 9 8 7 40 40 H 1.09001 * 109.43436 * 58.69140 * 9 8 7 41 41 H 1.09002 * 109.59343 * 113.81741 * 15 14 12 42 42 H 1.09005 * 109.58937 * 353.38866 * 15 14 12 43 43 H 1.09005 * 109.49709 * 185.41023 * 16 15 14 44 44 H 1.08999 * 109.49890 * 65.31606 * 16 15 14 45 45 H 1.09000 * 109.45997 * 301.34856 * 17 16 15 46 46 H 1.08994 * 109.45091 * 181.37663 * 17 16 15 47 47 H 0.97002 * 119.99857 * 179.97438 * 23 22 20 48 48 H 1.09003 * 109.61143 * 6.62509 * 28 14 12 49 49 H 1.09001 * 109.56288 * 246.19682 * 28 14 12 50 50 H 1.08996 * 109.58935 * 113.79219 * 29 6 4 51 51 H 1.09009 * 109.70117 * 353.43433 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8640 2.7908 0.0000 7 6 2.9819 3.9658 0.0003 8 6 3.3745 4.8766 1.1678 9 6 4.8650 5.2097 1.0717 10 6 5.6848 3.9209 1.1669 11 1 5.4654 3.4190 2.1093 12 6 7.1534 4.2530 1.1038 13 8 7.7007 4.3803 0.0290 14 7 7.8586 4.4087 2.2418 15 6 7.1880 4.3750 3.5486 16 6 7.5531 5.6453 4.3231 17 6 9.0765 5.7700 4.4014 18 6 9.6540 5.8828 2.9886 19 1 9.2244 6.7505 2.4881 20 6 11.1509 6.0380 3.0682 21 1 11.7951 5.3075 2.6014 22 6 11.6980 7.1125 3.7368 23 7 10.9135 8.0017 4.3057 24 14 13.5535 7.3008 3.8420 25 1 14.2066 6.1726 3.1309 26 1 13.9575 8.5831 3.2113 27 1 13.9716 7.2967 5.2669 28 6 9.3126 4.6156 2.1984 29 6 5.3184 2.9993 -0.0012 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.0939 4.5071 -0.9391 36 1 1.9468 3.6455 0.1188 37 1 2.7924 5.7970 1.1229 38 1 3.1759 4.3662 2.1102 39 1 5.1418 5.8772 1.8878 40 1 5.0666 5.6988 0.1187 41 1 7.5186 3.4990 4.1067 42 1 6.1083 4.3327 3.4043 43 1 7.1404 5.5885 5.3304 44 1 7.1428 6.5149 3.8098 45 1 9.4882 4.8884 4.8927 46 1 9.3388 6.6602 4.9731 47 1 11.2984 8.7575 4.7764 48 1 9.6349 4.7324 1.1637 49 1 9.8167 3.7590 2.6459 50 1 5.6205 3.4619 -0.9407 51 1 5.8270 2.0421 0.1150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000855259478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:54 Heat of formation + Delta-G solvation = -128.204903 kcal Electronic energy + Delta-G solvation = -30688.091336 eV Core-core repulsion = 26586.881174 eV Total energy + Delta-G solvation = -4101.210162 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.97229 -39.95302 -38.13227 -36.77149 -36.44459 -33.74344 -33.15017 -31.86420 -31.56222 -31.24326 -30.06710 -25.97418 -25.46990 -25.01658 -23.65429 -23.21105 -21.90176 -21.67013 -20.44750 -19.57604 -18.51336 -18.00004 -17.26333 -16.89168 -16.86700 -16.20979 -15.53458 -15.06980 -14.90128 -14.71525 -14.53030 -14.43886 -14.01378 -13.68316 -13.56542 -13.43258 -13.21777 -13.13006 -12.85448 -12.74129 -12.64615 -12.22893 -12.11102 -12.02439 -11.93203 -11.61299 -11.33388 -11.18821 -11.01179 -10.89686 -10.79743 -10.77269 -10.68049 -10.64333 -10.31317 -9.96899 -9.83013 -9.50295 -9.30579 -8.94816 -8.81786 -8.40746 -7.92655 -6.03736 -4.10526 1.85266 2.61241 2.95305 3.27797 3.35908 3.39260 3.44795 3.63141 4.41216 4.47206 4.59610 4.61889 4.63247 4.65403 4.75888 4.91337 4.95138 5.05864 5.15262 5.22907 5.26128 5.35893 5.39035 5.41582 5.53171 5.56831 5.60431 5.61896 5.64875 5.75713 5.78031 5.90290 6.06138 6.11596 6.12351 6.19187 6.30634 6.37505 6.45506 6.64082 6.77819 6.94024 7.10286 7.14023 7.30948 7.67595 7.88760 7.97861 8.05629 8.06881 8.35487 8.58460 8.93319 9.54470 11.01816 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027404 B = 0.002306 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.505390 B =12140.825680 C =12358.651494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.081 3.919 3 O -0.371 6.371 4 C 0.651 3.349 5 O -0.572 6.572 6 N -0.592 5.592 7 C 0.110 3.890 8 C -0.132 4.132 9 C -0.110 4.110 10 C -0.124 4.124 11 H 0.095 0.905 12 C 0.518 3.482 13 O -0.548 6.548 14 N -0.600 5.600 15 C 0.107 3.893 16 C -0.133 4.133 17 C -0.113 4.113 18 C 0.040 3.960 19 H 0.029 0.971 20 C -0.513 4.513 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.889 5.889 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.116 3.884 29 C 0.145 3.855 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.035 0.965 46 H 0.096 0.904 47 H 0.260 0.740 48 H 0.080 0.920 49 H 0.056 0.944 50 H 0.089 0.911 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.673 -9.869 -4.354 25.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.006 3.994 3 O -0.285 6.285 4 C 0.405 3.595 5 O -0.461 6.461 6 N -0.332 5.332 7 C -0.012 4.012 8 C -0.170 4.170 9 C -0.148 4.148 10 C -0.146 4.146 11 H 0.113 0.887 12 C 0.305 3.695 13 O -0.426 6.426 14 N -0.331 5.331 15 C -0.016 4.016 16 C -0.172 4.172 17 C -0.151 4.151 18 C 0.021 3.979 19 H 0.047 0.953 20 C -0.551 4.551 21 H 0.076 0.924 22 C -0.139 4.139 23 N -0.528 5.528 24 Si 0.721 3.279 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.211 1.211 28 C -0.005 4.005 29 C 0.023 3.977 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.054 0.946 46 H 0.114 0.886 47 H 0.070 0.930 48 H 0.098 0.902 49 H 0.074 0.926 50 H 0.107 0.893 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -22.189 -10.012 -4.815 24.815 hybrid contribution 1.031 0.140 0.359 1.101 sum -21.158 -9.872 -4.456 23.769 Atomic orbital electron populations 1.21823 0.92548 1.03067 1.03500 1.22951 0.94754 0.78818 1.02845 1.86213 1.22112 1.33079 1.87103 1.17954 0.81133 0.83998 0.76408 1.91004 1.59768 1.39355 1.55969 1.46913 1.07424 1.03070 1.75802 1.21796 0.94188 0.86025 0.99237 1.21927 0.96388 0.99964 0.98755 1.21483 0.93758 0.95626 1.03970 1.21717 0.93548 0.98401 1.00937 0.88682 1.20145 0.87863 0.77346 0.84177 1.90670 1.71641 1.51843 1.28470 1.48296 1.09743 1.69694 1.05369 1.21809 0.96266 0.99412 0.84158 1.21996 1.00658 0.96153 0.98355 1.21637 0.89847 1.02533 1.01072 1.18967 0.95834 0.91530 0.91533 0.95254 1.21119 0.91010 1.08849 1.34162 0.92414 1.24943 0.97999 0.95624 0.95321 1.69882 1.34335 1.12835 1.35735 0.86521 0.85656 0.78077 0.77668 1.19719 1.21038 1.21058 1.22031 0.76223 0.99915 1.02343 1.21472 0.76825 1.00861 0.98513 0.91495 0.90017 0.91457 0.91192 0.91162 0.90826 0.88918 0.89852 0.91180 0.90508 0.90543 0.91918 0.91019 0.92453 0.92373 0.94571 0.88603 0.93046 0.90190 0.92606 0.89284 0.88356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.29 37.16 0.38 -0.39 16 2 C 0.08 0.66 6.19 37.16 0.23 0.89 16 3 O -0.37 -3.91 8.86 -40.32 -0.36 -4.26 16 4 C 0.65 8.46 8.43 54.06 0.46 8.91 16 5 O -0.57 -9.23 15.55 -19.28 -0.30 -9.53 16 6 N -0.59 -6.82 2.97 -178.54 -0.53 -7.35 16 7 C 0.11 0.92 6.45 -3.71 -0.02 0.90 16 8 C -0.13 -1.05 6.08 -26.61 -0.16 -1.21 16 9 C -0.11 -1.19 5.06 -26.69 -0.14 -1.33 16 10 C -0.12 -1.60 1.87 -91.63 -0.17 -1.77 16 11 H 0.10 1.15 6.19 -51.93 -0.32 0.82 16 12 C 0.52 9.03 6.69 -10.98 -0.07 8.96 16 13 O -0.55 -11.43 15.58 5.56 0.09 -11.34 16 14 N -0.60 -10.86 2.97 -172.76 -0.51 -11.38 16 15 C 0.11 1.61 6.15 -3.71 -0.02 1.59 16 16 C -0.13 -2.30 6.08 -26.61 -0.16 -2.46 16 17 C -0.11 -2.49 4.96 -26.69 -0.13 -2.62 16 18 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 19 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 20 C -0.51 -13.80 8.56 -34.44 -0.29 -14.09 16 21 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 22 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 23 N -0.89 -24.74 11.32 55.43 0.63 -24.11 16 24 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 27 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 28 C 0.12 2.48 5.66 -3.71 -0.02 2.46 16 29 C 0.14 1.90 5.46 -3.69 -0.02 1.88 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.68 6.93 -51.93 -0.36 0.32 16 37 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.86 8.05 -51.93 -0.42 0.44 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 0.88 5.46 -51.93 -0.28 0.59 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.10 2.40 6.04 -51.93 -0.31 2.09 16 47 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 48 H 0.08 1.84 7.00 -51.93 -0.36 1.48 16 49 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.09 1.22 7.68 -51.93 -0.40 0.82 16 51 H 0.10 1.46 7.01 -51.92 -0.36 1.09 16 LS Contribution 396.15 15.07 5.97 5.97 Total: -1.00 -32.02 396.15 -9.19 -41.22 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: -8.71 Total: 0.65 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.45 Total: 4.10 kcal Atomic # 7 Polarization: -42.42 SS G_CDS: -0.42 Total: -42.84 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: -0.57 Total: -25.13 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.02 -9.19 -41.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855259478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.988 kcal (2) G-P(sol) polarization free energy of solvation -32.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds