Wall clock time and date at job start Tue Mar 31 2020 20:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45198 * 109.47355 * 2 1 4 4 C 1.34637 * 117.00274 * 180.02562 * 3 2 1 5 5 O 1.21507 * 120.00037 * 359.97438 * 4 3 2 6 6 N 1.34779 * 120.00273 * 180.02562 * 4 3 2 7 7 C 1.46924 * 120.63021 * 359.96696 * 6 4 3 8 8 C 1.53190 * 108.77506 * 126.41750 * 7 6 4 9 9 C 1.53038 * 109.33755 * 54.62005 * 8 7 6 10 10 C 1.53040 * 109.54166 * 298.68381 * 9 8 7 11 11 H 1.09000 * 109.49708 * 301.35083 * 10 9 8 12 12 C 1.50702 * 109.49891 * 181.28165 * 10 9 8 13 13 O 1.21276 * 120.00057 * 274.82572 * 12 10 9 14 14 N 1.34779 * 119.99911 * 94.82344 * 12 10 9 15 15 C 1.46925 * 120.62961 * 354.59149 * 14 12 10 16 16 C 1.53192 * 108.77428 * 233.60736 * 15 14 12 17 17 C 1.53043 * 109.31334 * 305.36251 * 16 15 14 18 18 C 1.53044 * 109.53411 * 61.36647 * 17 16 15 19 19 H 1.08995 * 109.50066 * 58.62044 * 18 17 16 20 20 C 1.50698 * 109.49510 * 178.68619 * 18 17 16 21 21 H 1.08001 * 120.00062 * 119.93347 * 20 18 17 22 22 C 1.37881 * 120.00038 * 299.93179 * 20 18 17 23 23 N 1.31519 * 119.99708 * 0.02562 * 22 20 18 24 24 Si 1.86796 * 120.00213 * 179.72415 * 22 20 18 25 25 H 1.48497 * 109.47046 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46961 * 119.99985 * 24 22 20 27 27 H 1.48495 * 109.47652 * 240.00006 * 24 22 20 28 28 C 1.46929 * 120.60754 * 174.60685 * 14 12 10 29 29 C 1.46924 * 120.63215 * 180.02562 * 6 4 3 30 30 H 1.09000 * 109.46848 * 59.99985 * 1 2 3 31 31 H 1.08992 * 109.47222 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46626 * 300.00580 * 1 2 3 33 33 H 1.09004 * 109.47275 * 240.00057 * 2 1 3 34 34 H 1.09002 * 109.47310 * 120.00227 * 2 1 3 35 35 H 1.09001 * 109.59109 * 246.20670 * 7 6 4 36 36 H 1.08996 * 109.58542 * 6.63320 * 7 6 4 37 37 H 1.08994 * 109.50208 * 174.58687 * 8 7 6 38 38 H 1.08999 * 109.50148 * 294.65593 * 8 7 6 39 39 H 1.09001 * 109.48786 * 178.64816 * 9 8 7 40 40 H 1.09001 * 109.43436 * 58.69140 * 9 8 7 41 41 H 1.09002 * 109.59343 * 113.81741 * 15 14 12 42 42 H 1.09005 * 109.58937 * 353.38866 * 15 14 12 43 43 H 1.09005 * 109.49709 * 185.41023 * 16 15 14 44 44 H 1.08999 * 109.49890 * 65.31606 * 16 15 14 45 45 H 1.09000 * 109.45997 * 301.34856 * 17 16 15 46 46 H 1.08994 * 109.45091 * 181.37663 * 17 16 15 47 47 H 0.97002 * 119.99857 * 179.97438 * 23 22 20 48 48 H 1.09003 * 109.61143 * 6.62509 * 28 14 12 49 49 H 1.09001 * 109.56288 * 246.19682 * 28 14 12 50 50 H 1.08996 * 109.58935 * 113.79219 * 29 6 4 51 51 H 1.09009 * 109.70117 * 353.43433 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3488 1.5453 -0.0005 5 8 4.0890 0.5817 -0.0005 6 7 3.8640 2.7908 0.0000 7 6 2.9819 3.9658 0.0003 8 6 3.3745 4.8766 1.1678 9 6 4.8650 5.2097 1.0717 10 6 5.6848 3.9209 1.1669 11 1 5.4654 3.4190 2.1093 12 6 7.1534 4.2530 1.1038 13 8 7.7007 4.3803 0.0290 14 7 7.8586 4.4087 2.2418 15 6 7.1880 4.3750 3.5486 16 6 7.5531 5.6453 4.3231 17 6 9.0765 5.7700 4.4014 18 6 9.6540 5.8828 2.9886 19 1 9.2244 6.7505 2.4881 20 6 11.1509 6.0380 3.0682 21 1 11.7951 5.3075 2.6014 22 6 11.6980 7.1125 3.7368 23 7 10.9135 8.0017 4.3057 24 14 13.5535 7.3008 3.8420 25 1 14.2066 6.1726 3.1309 26 1 13.9575 8.5831 3.2113 27 1 13.9716 7.2967 5.2669 28 6 9.3126 4.6156 2.1984 29 6 5.3184 2.9993 -0.0012 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.0939 4.5071 -0.9391 36 1 1.9468 3.6455 0.1188 37 1 2.7924 5.7970 1.1229 38 1 3.1759 4.3662 2.1102 39 1 5.1418 5.8772 1.8878 40 1 5.0666 5.6988 0.1187 41 1 7.5186 3.4990 4.1067 42 1 6.1083 4.3327 3.4043 43 1 7.1404 5.5885 5.3304 44 1 7.1428 6.5149 3.8098 45 1 9.4882 4.8884 4.8927 46 1 9.3388 6.6602 4.9731 47 1 11.2984 8.7575 4.7764 48 1 9.6349 4.7324 1.1637 49 1 9.8167 3.7590 2.6459 50 1 5.6205 3.4619 -0.9407 51 1 5.8270 2.0421 0.1150 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000855259478.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:57:53 Heat of formation + Delta-G solvation = -147.100933 kcal Electronic energy + Delta-G solvation = -30688.910729 eV Core-core repulsion = 26586.881174 eV Total energy + Delta-G solvation = -4102.029555 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.98786 -41.22294 -39.20220 -38.23909 -37.43924 -35.44057 -34.30957 -33.04538 -32.53938 -32.35228 -31.66865 -27.30410 -26.77083 -26.53020 -24.77304 -23.94591 -23.35735 -22.69957 -21.67436 -20.89766 -19.72529 -19.18687 -18.53795 -18.16838 -17.85768 -17.74980 -16.88780 -16.58752 -16.12659 -15.78940 -15.60505 -15.47109 -15.10589 -15.01133 -14.88395 -14.64944 -14.38158 -14.23107 -14.12476 -13.83409 -13.65519 -13.59387 -13.45088 -12.91058 -12.90299 -12.82139 -12.58841 -12.55740 -12.43864 -12.18941 -12.04355 -11.93662 -11.86308 -11.71584 -11.59612 -11.55441 -11.52060 -11.26467 -10.86704 -10.63559 -10.42766 -9.89388 -9.51289 -8.11519 -6.26099 0.96238 1.38724 1.41206 1.52161 1.55716 1.65169 2.08493 2.42999 2.80329 3.14995 3.41958 3.63620 3.68239 3.91673 4.02323 4.05289 4.08333 4.14138 4.17905 4.26206 4.34984 4.36523 4.41708 4.51367 4.53678 4.61832 4.69012 4.71884 4.76612 4.80004 4.84583 4.86359 4.96434 4.96827 5.03922 5.06108 5.13608 5.15713 5.27665 5.32103 5.34423 5.40384 5.47472 5.55143 5.61264 5.93223 6.13200 6.19442 6.34365 6.52426 6.83186 7.11387 7.16671 7.41794 8.92237 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.027404 B = 0.002306 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.505390 B =12140.825680 C =12358.651494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.072 3.928 3 O -0.364 6.364 4 C 0.648 3.352 5 O -0.611 6.611 6 N -0.588 5.588 7 C 0.105 3.895 8 C -0.121 4.121 9 C -0.109 4.109 10 C -0.108 4.108 11 H 0.113 0.887 12 C 0.513 3.487 13 O -0.590 6.590 14 N -0.605 5.605 15 C 0.107 3.893 16 C -0.124 4.124 17 C -0.107 4.107 18 C 0.043 3.957 19 H -0.012 1.012 20 C -0.537 4.537 21 H 0.051 0.949 22 C 0.017 3.983 23 N -0.911 5.911 24 Si 0.954 3.046 25 H -0.270 1.270 26 H -0.282 1.282 27 H -0.276 1.276 28 C 0.128 3.872 29 C 0.151 3.849 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.066 0.934 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.035 0.965 46 H 0.063 0.937 47 H 0.262 0.738 48 H 0.054 0.946 49 H 0.060 0.940 50 H 0.079 0.921 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.424 -10.351 -3.332 27.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.002 4.002 3 O -0.277 6.277 4 C 0.403 3.597 5 O -0.503 6.503 6 N -0.327 5.327 7 C -0.016 4.016 8 C -0.159 4.159 9 C -0.147 4.147 10 C -0.131 4.131 11 H 0.131 0.869 12 C 0.302 3.698 13 O -0.471 6.471 14 N -0.336 5.336 15 C -0.014 4.014 16 C -0.162 4.162 17 C -0.145 4.145 18 C 0.024 3.976 19 H 0.006 0.994 20 C -0.575 4.575 21 H 0.069 0.931 22 C -0.182 4.182 23 N -0.551 5.551 24 Si 0.780 3.220 25 H -0.195 1.195 26 H -0.208 1.208 27 H -0.202 1.202 28 C 0.005 3.995 29 C 0.029 3.971 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.130 0.870 43 H 0.108 0.892 44 H 0.067 0.933 45 H 0.054 0.946 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.072 0.928 49 H 0.079 0.921 50 H 0.097 0.903 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -24.996 -10.484 -3.776 27.367 hybrid contribution 1.879 0.296 -0.012 1.902 sum -23.117 -10.188 -3.788 25.545 Atomic orbital electron populations 1.21830 0.89810 1.04503 1.03894 1.23251 0.96770 0.77729 1.02466 1.86235 1.20374 1.34476 1.86640 1.18128 0.81703 0.83876 0.75965 1.90978 1.60820 1.40748 1.57740 1.46940 1.06953 1.03708 1.75126 1.22074 0.94377 0.84963 1.00142 1.21901 0.94070 1.01091 0.98804 1.21527 0.95548 0.94099 1.03559 1.21660 0.90106 0.99704 1.01582 0.86873 1.20981 0.89594 0.76035 0.83175 1.90648 1.72894 1.53483 1.30032 1.48362 1.08395 1.69691 1.07111 1.22033 0.98318 0.98771 0.82319 1.21890 0.96733 0.97004 1.00609 1.21435 0.93602 1.00877 0.98585 1.18857 0.94544 0.91133 0.93107 0.99375 1.21467 0.92633 1.09105 1.34342 0.93116 1.25675 1.02183 0.95370 0.95016 1.70007 1.35914 1.13111 1.36035 0.85566 0.80654 0.77885 0.77910 1.19463 1.20836 1.20163 1.21586 0.79001 0.98669 1.00210 1.21214 0.78052 0.99668 0.98190 0.91117 0.88058 0.90960 0.91746 0.91542 0.89908 0.87184 0.87129 0.90256 0.90399 0.91542 0.90308 0.87035 0.89163 0.93285 0.94582 0.91823 0.92927 0.92770 0.92140 0.90305 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 10.29 71.98 0.74 -0.34 16 2 C 0.07 1.07 6.19 71.98 0.45 1.52 16 3 O -0.36 -6.97 8.86 -55.47 -0.49 -7.47 16 4 C 0.65 16.11 8.43 129.79 1.09 17.20 16 5 O -0.61 -19.71 15.55 19.82 0.31 -19.41 16 6 N -0.59 -12.57 2.97 -949.17 -2.82 -15.39 16 7 C 0.11 1.44 6.45 86.36 0.56 2.00 16 8 C -0.12 -1.44 6.08 30.67 0.19 -1.26 16 9 C -0.11 -2.10 5.06 30.62 0.15 -1.94 16 10 C -0.11 -2.64 1.87 -11.45 -0.02 -2.66 16 11 H 0.11 2.36 6.19 -2.39 -0.01 2.34 16 12 C 0.51 17.91 6.69 87.66 0.59 18.50 16 13 O -0.59 -25.51 15.58 -3.02 -0.05 -25.55 16 14 N -0.60 -21.75 2.97 -818.88 -2.43 -24.19 16 15 C 0.11 2.97 6.15 86.36 0.53 3.50 16 16 C -0.12 -4.06 6.08 30.67 0.19 -3.88 16 17 C -0.11 -4.75 4.96 30.62 0.15 -4.60 16 18 C 0.04 2.16 2.25 -11.46 -0.03 2.13 16 19 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 20 C -0.54 -29.91 8.56 25.60 0.22 -29.69 16 21 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 22 C 0.02 0.93 5.30 84.65 0.45 1.37 16 23 N -0.91 -51.93 11.32 21.45 0.24 -51.69 16 24 Si 0.95 43.86 29.54 68.60 2.03 45.89 16 25 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 27 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 28 C 0.13 5.67 5.66 86.36 0.49 6.16 16 29 C 0.15 3.91 5.46 86.38 0.47 4.38 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.11 1.19 6.93 -2.39 -0.02 1.18 16 37 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 39 H 0.08 1.52 8.05 -2.39 -0.02 1.50 16 40 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.11 2.25 5.46 -2.38 -0.01 2.24 16 43 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 44 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.06 3.26 6.04 -2.39 -0.01 3.24 16 47 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 48 H 0.05 2.65 7.00 -2.39 -0.02 2.63 16 49 H 0.06 2.59 8.14 -2.39 -0.02 2.58 16 50 H 0.08 2.19 7.68 -2.39 -0.02 2.17 16 51 H 0.08 2.34 7.01 -2.38 -0.02 2.32 16 Total: -1.00 -73.84 396.15 3.91 -69.93 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.91 Total: 15.48 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 6.22 Total: 12.40 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -5.01 Total: -91.27 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: -0.23 Total: -52.43 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -73.84 3.91 -69.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000855259478.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.174 kcal (2) G-P(sol) polarization free energy of solvation -73.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds