Wall clock time and date at job start Tue Mar 31 2020 22:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34226 * 117.00294 * 2 1 4 4 O 1.20829 * 119.99578 * 359.97438 * 3 2 1 5 5 C 1.50694 * 120.00378 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.47440 * 180.02562 * 5 3 2 7 7 N 1.46497 * 109.47368 * 179.97438 * 6 5 3 8 8 C 1.37102 * 119.99614 * 89.05705 * 7 6 5 9 9 H 1.08001 * 119.99567 * 220.59893 * 8 7 6 10 10 C 1.38948 * 120.00228 * 40.59686 * 8 7 6 11 11 N 1.31409 * 120.00216 * 19.31971 * 10 8 7 12 12 Si 1.86803 * 120.00143 * 199.31911 * 10 8 7 13 13 H 1.48494 * 109.47245 * 89.99988 * 12 10 8 14 14 H 1.48500 * 109.47247 * 210.00348 * 12 10 8 15 15 H 1.48506 * 109.46851 * 330.00064 * 12 10 8 16 16 C 1.34775 * 120.00349 * 269.05572 * 7 6 5 17 17 O 1.21292 * 119.99806 * 0.02562 * 16 7 6 18 18 C 1.50694 * 119.99981 * 180.02562 * 16 7 6 19 19 H 1.08999 * 109.88312 * 358.20009 * 18 16 7 20 20 C 1.54319 * 109.88804 * 237.17097 * 18 16 7 21 21 C 1.55398 * 102.90226 * 218.40770 * 20 18 16 22 22 C 1.54909 * 101.73843 * 35.48262 * 21 20 18 23 23 N 1.47446 * 109.89026 * 119.23790 * 18 16 7 24 24 C 1.46897 * 110.99503 * 356.14304 * 23 18 16 25 25 C 1.54259 * 110.03645 * 294.74234 * 24 23 18 26 26 C 1.54890 * 104.19852 * 217.10655 * 25 24 23 27 27 C 1.54890 * 102.74784 * 37.94156 * 26 25 24 28 28 C 1.53877 * 110.03074 * 177.57559 * 24 23 18 29 29 H 1.08994 * 109.47116 * 59.99720 * 1 2 3 30 30 H 1.09001 * 109.46709 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46916 * 300.00042 * 1 2 3 32 32 H 1.08997 * 109.47752 * 59.99559 * 5 3 2 33 33 H 1.09003 * 109.47228 * 299.99846 * 5 3 2 34 34 H 1.09003 * 109.46691 * 300.00060 * 6 5 3 35 35 H 1.09006 * 109.47069 * 59.99645 * 6 5 3 36 36 H 0.97000 * 120.00294 * 179.97438 * 11 10 8 37 37 H 1.09005 * 110.70988 * 336.69330 * 20 18 16 38 38 H 1.09003 * 110.70724 * 99.92540 * 20 18 16 39 39 H 1.08993 * 110.87263 * 277.39517 * 21 20 18 40 40 H 1.09004 * 111.05695 * 153.64896 * 21 20 18 41 41 H 1.09001 * 110.37050 * 204.18864 * 22 21 20 42 42 H 1.08993 * 110.46948 * 81.89655 * 22 21 20 43 43 H 1.08999 * 110.01741 * 56.18829 * 24 23 18 44 44 H 1.09001 * 110.48359 * 335.78703 * 25 24 23 45 45 H 1.09004 * 110.48724 * 98.42890 * 25 24 23 46 46 H 1.08993 * 110.75784 * 279.62939 * 26 25 24 47 47 H 1.09005 * 110.75763 * 156.25170 * 26 25 24 48 48 H 1.08997 * 110.49064 * 203.37331 * 27 26 25 49 49 H 1.09004 * 110.48617 * 80.73559 * 27 26 25 50 50 H 1.08995 * 110.03414 * 238.57052 * 28 24 23 51 51 H 1.08999 * 110.03127 * 359.95091 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7421 0.0002 7 7 5.4632 2.8187 0.0002 8 6 6.1487 2.8357 -1.1870 9 1 7.0644 2.2725 -1.2898 10 6 5.6653 3.5775 -2.2578 11 7 4.7977 4.5424 -2.0504 12 14 6.2487 3.2031 -3.9925 13 1 5.3521 2.1925 -4.6089 14 1 6.2232 4.4473 -4.8027 15 1 7.6346 2.6717 -3.9447 16 6 6.1352 2.8726 1.1673 17 8 5.5287 2.8571 2.2175 18 6 7.6400 2.9521 1.1672 19 1 8.0127 2.9233 0.1433 20 6 8.2279 1.7745 1.9730 21 6 9.4295 2.4258 2.7125 22 6 8.8836 3.8441 3.0126 23 7 8.0766 4.1972 1.8253 24 6 6.9237 5.0267 2.2000 25 6 6.1854 5.5083 0.9341 26 6 5.7357 6.9492 1.2815 27 6 6.9358 7.4950 2.0946 28 6 7.4008 6.2899 2.9379 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9558 0.7809 -0.8907 33 1 3.9564 0.7805 0.8892 34 1 3.6101 3.2367 -0.8894 35 1 3.6108 3.2356 0.8907 36 1 4.4606 5.0605 -2.7979 37 1 7.4976 1.3931 2.6867 38 1 8.5665 0.9819 1.3058 39 1 10.3047 2.4733 2.0647 40 1 9.6575 1.8919 3.6351 41 1 9.7059 4.5489 3.1358 42 1 8.2590 3.8311 3.9058 43 1 6.2450 4.4573 2.8350 44 1 6.8604 5.5152 0.0782 45 1 5.3200 4.8766 0.7335 46 1 4.8314 6.9356 1.8897 47 1 5.5844 7.5358 0.3753 48 1 6.6182 8.3132 2.7410 49 1 7.7320 7.8228 1.4262 50 1 6.9530 6.3339 3.9307 51 1 8.4878 6.2869 3.0187 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871342418.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:12 Heat of formation + Delta-G solvation = -118.230430 kcal Electronic energy + Delta-G solvation = -32508.983011 eV Core-core repulsion = 28408.205375 eV Total energy + Delta-G solvation = -4100.777636 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.90973 -41.45796 -39.08886 -37.73039 -37.51595 -36.67435 -33.79494 -32.62926 -32.19625 -30.44091 -29.15408 -28.60192 -27.47691 -26.86573 -25.38063 -22.90018 -22.40563 -21.75884 -21.08807 -20.91362 -20.37981 -18.92960 -18.21578 -18.06616 -17.71277 -17.58157 -17.20155 -16.69689 -16.38898 -15.91470 -15.72009 -15.43491 -15.12253 -14.96185 -14.41009 -14.30044 -14.06193 -13.99044 -13.86814 -13.76235 -13.56504 -13.12954 -13.12748 -12.92116 -12.72817 -12.59259 -12.47503 -12.19030 -12.04887 -11.96720 -11.82498 -11.80181 -11.73001 -11.70687 -11.63713 -11.58435 -11.42591 -11.36778 -11.32701 -10.96825 -10.49924 -9.50681 -8.88294 -8.18046 -6.00949 1.10203 1.45553 1.52287 1.60568 1.64058 1.99179 2.37404 2.98805 3.12007 3.22571 3.68018 3.80135 3.87063 3.90530 3.94378 4.08009 4.16333 4.19803 4.27721 4.28815 4.30381 4.48068 4.57671 4.62490 4.63925 4.67162 4.68335 4.72228 4.81705 4.86821 4.91331 4.96840 4.97977 4.98773 5.08833 5.11152 5.12324 5.22486 5.24738 5.25029 5.39526 5.41722 5.43794 5.56035 5.58979 5.69831 6.06835 6.18857 6.31901 6.45563 6.67168 7.20697 7.60879 8.04914 8.80125 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.009427 B = 0.004738 C = 0.004275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.384562 B = 5908.420836 C = 6548.735780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.472 3.528 4 O -0.538 6.538 5 C -0.114 4.114 6 C 0.137 3.863 7 N -0.437 5.437 8 C -0.352 4.352 9 H 0.098 0.902 10 C 0.017 3.983 11 N -0.873 5.873 12 Si 0.969 3.031 13 H -0.276 1.276 14 H -0.292 1.292 15 H -0.257 1.257 16 C 0.471 3.529 17 O -0.628 6.628 18 C 0.061 3.939 19 H 0.099 0.901 20 C -0.126 4.126 21 C -0.112 4.112 22 C 0.037 3.963 23 N -0.502 5.502 24 C 0.054 3.946 25 C -0.097 4.097 26 C -0.120 4.120 27 C -0.107 4.107 28 C -0.110 4.110 29 H 0.060 0.940 30 H 0.138 0.862 31 H 0.059 0.941 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.031 0.969 36 H 0.267 0.733 37 H 0.053 0.947 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.034 0.966 43 H 0.050 0.950 44 H 0.048 0.952 45 H 0.053 0.947 46 H 0.049 0.951 47 H 0.056 0.944 48 H 0.079 0.921 49 H 0.067 0.933 50 H 0.061 0.939 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 -4.715 4.583 7.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.153 4.153 6 C 0.012 3.988 7 N -0.154 5.154 8 C -0.479 4.479 9 H 0.116 0.884 10 C -0.189 4.189 11 N -0.509 5.509 12 Si 0.794 3.206 13 H -0.202 1.202 14 H -0.218 1.218 15 H -0.181 1.181 16 C 0.262 3.738 17 O -0.516 6.516 18 C -0.049 4.049 19 H 0.117 0.883 20 C -0.165 4.165 21 C -0.150 4.150 22 C -0.090 4.090 23 N -0.228 5.228 24 C -0.055 4.055 25 C -0.136 4.136 26 C -0.158 4.158 27 C -0.145 4.145 28 C -0.148 4.148 29 H 0.079 0.921 30 H 0.156 0.844 31 H 0.078 0.922 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.074 0.926 48 H 0.097 0.903 49 H 0.086 0.914 50 H 0.080 0.920 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.573 -3.997 4.618 7.076 hybrid contribution -1.218 -0.267 -0.598 1.383 sum 2.354 -4.263 4.020 6.315 Atomic orbital electron populations 1.23579 0.74791 1.05880 1.02412 1.86507 1.25155 1.32406 1.83858 1.23888 0.92196 0.81263 0.71019 1.90642 1.67868 1.37493 1.46736 1.21679 0.86647 1.00957 1.05978 1.20810 0.83188 0.92696 1.02058 1.43534 1.03896 1.62804 1.05202 1.19512 1.10036 1.29758 0.88597 0.88435 1.26049 0.96726 0.93010 1.03093 1.70046 1.31033 1.17025 1.32772 0.85287 0.79470 0.77308 0.78526 1.20209 1.21827 1.18051 1.21198 0.91059 0.78232 0.83304 1.90438 1.71324 1.57043 1.32762 1.22475 0.90364 0.90966 1.01114 0.88282 1.22766 0.97955 0.96892 0.98869 1.22705 0.97111 0.94147 1.01058 1.23168 0.96969 0.97589 0.91302 1.64238 1.19442 1.14070 1.25009 1.22916 0.91605 0.94496 0.96471 1.22286 0.99187 0.96041 0.96049 1.22379 0.98013 0.96195 0.99225 1.22246 0.96956 0.97176 0.98081 1.22188 1.01592 0.93199 0.97821 0.92131 0.84358 0.92190 0.86314 0.88102 0.89376 0.95034 0.92356 0.92773 0.89247 0.89216 0.88901 0.88554 0.94761 0.93235 0.93291 0.92793 0.93226 0.92554 0.90260 0.91379 0.91990 0.90074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.56 113.37 1.20 1.81 16 2 O -0.36 -11.43 10.56 -51.38 -0.54 -11.98 16 3 C 0.47 18.22 7.96 71.23 0.57 18.79 16 4 O -0.54 -24.01 15.73 21.96 0.35 -23.66 16 5 C -0.11 -4.52 6.13 29.85 0.18 -4.34 16 6 C 0.14 6.61 3.72 86.38 0.32 6.93 16 7 N -0.44 -20.74 1.42 -635.53 -0.90 -21.64 16 8 C -0.35 -16.56 8.23 84.04 0.69 -15.87 16 9 H 0.10 4.37 6.72 -2.91 -0.02 4.35 16 10 C 0.02 0.79 4.99 84.93 0.42 1.21 16 11 N -0.87 -44.95 11.54 21.66 0.25 -44.70 16 12 Si 0.97 38.33 29.59 68.60 2.03 40.36 16 13 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 14 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.26 -9.60 7.11 99.48 0.71 -8.90 16 16 C 0.47 21.80 3.35 87.66 0.29 22.10 16 17 O -0.63 -32.00 13.35 -3.07 -0.04 -32.05 16 18 C 0.06 2.43 3.27 44.51 0.15 2.57 16 19 H 0.10 4.12 5.80 -2.39 -0.01 4.11 16 20 C -0.13 -4.01 6.46 31.87 0.21 -3.80 16 21 C -0.11 -2.80 7.08 32.07 0.23 -2.57 16 22 C 0.04 1.08 5.51 86.77 0.48 1.56 16 23 N -0.50 -18.65 4.95 -835.69 -4.13 -22.79 16 24 C 0.05 2.16 1.89 45.64 0.09 2.24 16 25 C -0.10 -4.40 4.98 31.67 0.16 -4.24 16 26 C -0.12 -4.64 6.91 31.89 0.22 -4.42 16 27 C -0.11 -3.31 6.83 31.67 0.22 -3.09 16 28 C -0.11 -3.53 6.01 31.32 0.19 -3.35 16 29 H 0.06 1.41 8.13 -2.39 -0.02 1.40 16 30 H 0.14 2.01 8.14 -2.39 -0.02 2.00 16 31 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 32 H 0.12 4.37 8.14 -2.39 -0.02 4.35 16 33 H 0.10 3.88 8.14 -2.39 -0.02 3.86 16 34 H 0.09 4.68 5.62 -2.39 -0.01 4.67 16 35 H 0.03 1.68 7.34 -2.38 -0.02 1.67 16 36 H 0.27 13.32 8.31 -92.71 -0.77 12.55 16 37 H 0.05 1.91 7.49 -2.38 -0.02 1.90 16 38 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.10 2.38 7.64 -2.39 -0.02 2.36 16 42 H 0.03 1.07 7.76 -2.39 -0.02 1.05 16 43 H 0.05 2.36 5.30 -2.39 -0.01 2.35 16 44 H 0.05 2.43 8.05 -2.39 -0.02 2.41 16 45 H 0.05 2.85 4.94 -2.38 -0.01 2.83 16 46 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 48 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 50 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.08 2.33 6.72 -2.39 -0.02 2.32 16 Total: -1.00 -62.82 389.88 3.53 -59.29 By element: Atomic # 1 Polarization: 40.70 SS G_CDS: 0.92 Total: 41.62 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 5.60 Total: 15.53 kcal Atomic # 7 Polarization: -84.35 SS G_CDS: -4.78 Total: -89.13 kcal Atomic # 8 Polarization: -67.45 SS G_CDS: -0.24 Total: -67.68 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -62.82 3.53 -59.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342418.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.938 kcal (2) G-P(sol) polarization free energy of solvation -62.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds