Wall clock time and date at job start Tue Mar 31 2020 22:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 117.00021 * 2 1 4 4 O 1.20826 * 119.99739 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99672 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.46591 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.46808 * 180.02562 * 6 5 3 8 8 C 1.37105 * 119.99568 * 264.53719 * 7 6 5 9 9 H 1.08005 * 119.99619 * 145.99321 * 8 7 6 10 10 C 1.38951 * 119.99976 * 325.98869 * 8 7 6 11 11 N 1.31406 * 120.00118 * 337.83278 * 10 8 7 12 12 Si 1.86803 * 119.99565 * 157.83430 * 10 8 7 13 13 H 1.48493 * 109.47111 * 89.99913 * 12 10 8 14 14 H 1.48505 * 109.46738 * 209.99978 * 12 10 8 15 15 H 1.48495 * 109.47277 * 329.99789 * 12 10 8 16 16 C 1.34771 * 120.00397 * 84.53838 * 7 6 5 17 17 O 1.21293 * 119.99975 * 0.02562 * 16 7 6 18 18 C 1.50700 * 120.00204 * 179.97438 * 16 7 6 19 19 C 1.53506 * 114.17211 * 180.02562 * 18 16 7 20 20 N 1.47480 * 87.93559 * 220.14027 * 19 18 16 21 21 C 1.46900 * 111.00152 * 138.70232 * 20 19 18 22 22 C 1.52999 * 109.47156 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47122 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.47467 * 59.99874 * 23 22 21 25 25 C 1.52999 * 109.47053 * 300.00168 * 24 23 22 26 26 C 1.52997 * 109.47103 * 59.99938 * 21 20 19 27 27 C 1.47479 * 87.83256 * 27.01241 * 20 19 18 28 28 H 1.09003 * 109.47217 * 60.00046 * 1 2 3 29 29 H 1.09007 * 109.46827 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46982 * 299.99894 * 1 2 3 31 31 H 1.09003 * 109.47021 * 60.00184 * 5 3 2 32 32 H 1.08994 * 109.46838 * 299.99682 * 5 3 2 33 33 H 1.08997 * 109.47220 * 59.99922 * 6 5 3 34 34 H 1.09005 * 109.47114 * 299.99894 * 6 5 3 35 35 H 0.96999 * 120.00002 * 179.97438 * 11 10 8 36 36 H 1.08998 * 113.25908 * 312.95269 * 18 16 7 37 37 H 1.09002 * 113.47960 * 105.37055 * 19 18 16 38 38 H 1.09004 * 113.53238 * 334.91566 * 19 18 16 39 39 H 1.09000 * 109.47087 * 300.00549 * 21 20 19 40 40 H 1.09002 * 109.47262 * 59.99860 * 22 21 20 41 41 H 1.09000 * 109.47350 * 300.00117 * 22 21 20 42 42 H 1.09001 * 109.47375 * 179.97438 * 23 22 21 43 43 H 1.09007 * 109.47042 * 299.99861 * 23 22 21 44 44 H 1.09007 * 109.47000 * 59.99962 * 24 23 22 45 45 H 1.09001 * 109.47542 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.47262 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47350 * 299.99589 * 25 24 23 48 48 H 1.09007 * 109.46943 * 60.00154 * 26 21 20 49 49 H 1.08994 * 109.47527 * 300.00212 * 26 21 20 50 50 H 1.08992 * 113.48071 * 87.75652 * 27 20 19 51 51 H 1.09001 * 113.47236 * 218.22758 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 -0.0011 7 7 5.4631 2.8187 -0.0023 8 6 6.1426 2.9676 1.1792 9 1 7.1098 2.5044 1.3079 10 6 5.5871 3.7144 2.2108 11 7 4.6676 4.6157 1.9482 12 14 6.1474 3.4371 3.9711 13 1 7.2928 4.3326 4.2729 14 1 5.0276 3.7355 4.8998 15 1 6.5670 2.0227 4.1401 16 6 6.1410 2.7429 -1.1646 17 8 5.5398 2.6116 -2.2099 18 6 7.6459 2.8223 -1.1659 19 6 8.2795 2.7224 -2.5605 20 7 9.3320 1.8794 -1.9635 21 6 9.6656 0.7516 -2.8437 22 6 10.7579 -0.0985 -2.1917 23 6 11.1058 -1.2727 -3.1087 24 6 11.6081 -0.7396 -4.4520 25 6 10.5157 0.1105 -5.1039 26 6 10.1671 1.2843 -4.1874 27 6 8.3507 1.4776 -0.9385 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9557 0.7808 -0.8909 32 1 3.9563 0.7805 0.8891 33 1 3.6107 3.2364 0.8889 34 1 3.6100 3.2359 -0.8911 35 1 4.2795 5.1368 2.6684 36 1 8.0343 3.6386 -0.5570 37 1 8.6490 3.6756 -2.9388 38 1 7.6583 2.1942 -3.2839 39 1 8.7772 0.1406 -3.0039 40 1 10.4002 -0.4780 -1.2346 41 1 11.6464 0.5123 -2.0312 42 1 11.8843 -1.8781 -2.6445 43 1 10.2174 -1.8837 -3.2696 44 1 12.4964 -0.1286 -4.2911 45 1 11.8563 -1.5761 -5.1051 46 1 10.8737 0.4907 -6.0607 47 1 9.6275 -0.5004 -5.2648 48 1 11.0554 1.8953 -4.0273 49 1 9.3886 1.8896 -4.6517 50 1 7.7478 0.6170 -1.2282 51 1 8.7806 1.3757 0.0579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871345009.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:09 Heat of formation + Delta-G solvation = -98.721441 kcal Electronic energy + Delta-G solvation = -30567.361973 eV Core-core repulsion = 26467.430310 eV Total energy + Delta-G solvation = -4099.931663 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.48390 -40.03976 -38.43251 -37.07754 -36.14820 -34.90757 -32.02409 -31.38829 -30.85234 -30.55255 -27.68739 -26.72928 -25.60794 -25.06838 -23.67446 -22.35210 -21.84652 -20.43307 -19.81979 -19.67903 -18.82906 -17.45319 -17.03350 -16.28479 -16.16336 -15.94332 -15.66675 -15.17106 -14.73951 -14.55419 -14.39405 -14.12040 -14.00715 -13.76169 -13.36902 -13.33314 -13.19149 -12.72203 -12.28278 -12.23195 -12.22543 -12.11328 -12.04506 -11.77582 -11.52407 -11.30728 -11.26628 -11.11384 -11.05456 -10.83934 -10.66812 -10.60206 -10.55776 -10.45032 -10.24185 -10.12004 -10.02538 -9.98730 -9.83070 -9.18065 -8.69313 -8.41552 -7.66254 -6.44621 -4.12416 2.65121 3.02995 3.07907 3.19509 3.21963 3.72752 4.05129 4.17821 4.63563 4.67117 4.73258 4.88475 4.92254 5.08320 5.21896 5.22813 5.25367 5.29199 5.29268 5.38620 5.42929 5.48231 5.49485 5.59816 5.62278 5.67214 5.79878 5.81038 5.88672 5.91500 5.95832 6.03797 6.05037 6.14074 6.16742 6.21195 6.22029 6.24403 6.25958 6.33119 6.40990 6.61796 6.70602 6.75078 6.86929 7.28916 7.40426 7.43376 7.79814 8.16274 8.29382 8.99926 9.41125 9.83737 10.56945 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010053 B = 0.003277 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.480406 B = 8542.667362 C =10162.405470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.466 3.534 4 O -0.504 6.504 5 C -0.124 4.124 6 C 0.126 3.874 7 N -0.432 5.432 8 C -0.345 4.345 9 H 0.095 0.905 10 C 0.045 3.955 11 N -0.850 5.850 12 Si 0.911 3.089 13 H -0.275 1.275 14 H -0.282 1.282 15 H -0.267 1.267 16 C 0.477 3.523 17 O -0.604 6.604 18 C -0.113 4.113 19 C 0.019 3.981 20 N -0.471 5.471 21 C 0.051 3.949 22 C -0.105 4.105 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.114 4.114 27 C 0.022 3.978 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.118 0.882 34 H 0.063 0.937 35 H 0.272 0.728 36 H 0.120 0.880 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.068 0.932 49 H 0.063 0.937 50 H 0.065 0.935 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.095 -10.459 -5.604 13.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.309 3.691 4 O -0.391 6.391 5 C -0.163 4.163 6 C 0.002 3.998 7 N -0.149 5.149 8 C -0.473 4.473 9 H 0.113 0.887 10 C -0.162 4.162 11 N -0.486 5.486 12 Si 0.736 3.264 13 H -0.201 1.201 14 H -0.207 1.207 15 H -0.192 1.192 16 C 0.266 3.734 17 O -0.491 6.491 18 C -0.134 4.134 19 C -0.110 4.110 20 N -0.193 5.193 21 C -0.058 4.058 22 C -0.143 4.143 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.108 4.108 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.122 0.878 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.138 0.862 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.083 0.917 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.097 -9.796 -5.810 12.919 hybrid contribution -0.800 -0.435 0.780 1.200 sum 5.297 -10.231 -5.030 12.571 Atomic orbital electron populations 1.23168 0.77371 1.03020 1.02346 1.86539 1.22749 1.34438 1.84676 1.24076 0.92391 0.80891 0.71755 1.90653 1.67251 1.36216 1.45001 1.21903 0.85872 1.03457 1.05099 1.21201 0.82283 0.90796 1.05501 1.43421 1.04371 1.61741 1.05376 1.19450 1.05161 1.32362 0.90306 0.88732 1.25370 0.96841 0.93502 1.00530 1.69938 1.27240 1.17978 1.33415 0.86201 0.78531 0.79229 0.82391 1.20084 1.20735 1.19189 1.20164 0.88911 0.80809 0.83544 1.90527 1.70346 1.56214 1.31979 1.22531 0.93449 0.99629 0.97823 1.23639 0.91844 0.98831 0.96654 1.68968 1.28233 1.13358 1.08777 1.22214 0.97687 0.92681 0.93222 1.21443 0.98787 0.96002 0.98095 1.21534 1.00828 0.97653 0.95669 1.21537 0.98423 0.99179 0.96479 1.21510 0.98799 0.97040 0.98235 1.21568 1.01605 0.97619 0.94350 1.23649 0.92662 0.96501 0.97964 0.92184 0.88628 0.92148 0.88486 0.87844 0.86396 0.91878 0.91778 0.86229 0.90211 0.90392 0.93498 0.92069 0.91309 0.92044 0.92195 0.91998 0.92364 0.92031 0.92141 0.91318 0.91790 0.91687 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -6.00 10.57 -39.26 -0.41 -6.41 16 3 C 0.47 8.97 7.96 36.01 0.29 9.26 16 4 O -0.50 -11.02 15.73 -18.75 -0.29 -11.31 16 5 C -0.12 -2.46 6.10 -27.88 -0.17 -2.63 16 6 C 0.13 2.99 4.19 -4.04 -0.02 2.97 16 7 N -0.43 -10.31 2.56 -114.81 -0.29 -10.60 16 8 C -0.35 -8.19 8.54 -14.93 -0.13 -8.32 16 9 H 0.10 2.12 6.91 -52.48 -0.36 1.75 16 10 C 0.04 1.08 4.92 -17.47 -0.09 0.99 16 11 N -0.85 -22.04 11.34 55.50 0.63 -21.41 16 12 Si 0.91 18.68 29.61 -169.99 -5.03 13.64 16 13 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 14 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 15 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 16 C 0.48 11.00 7.17 -10.99 -0.08 10.92 16 17 O -0.60 -15.21 15.62 5.55 0.09 -15.13 16 18 C -0.11 -2.17 3.13 -91.24 -0.29 -2.45 16 19 C 0.02 0.33 5.79 -7.56 -0.04 0.28 16 20 N -0.47 -7.25 6.15 -236.63 -1.45 -8.71 16 21 C 0.05 0.68 1.60 -67.72 -0.11 0.57 16 22 C -0.11 -1.22 5.42 -26.73 -0.14 -1.37 16 23 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 24 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 25 C -0.12 -1.17 5.92 -26.76 -0.16 -1.33 16 26 C -0.11 -1.35 5.10 -26.76 -0.14 -1.48 16 27 C 0.02 0.36 6.71 -7.56 -0.05 0.31 16 28 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.10 1.88 8.14 -51.93 -0.42 1.46 16 32 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 33 H 0.12 3.04 5.31 -51.93 -0.28 2.76 16 34 H 0.06 1.62 7.55 -51.93 -0.39 1.22 16 35 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 36 H 0.12 2.38 7.84 -51.93 -0.41 1.97 16 37 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.08 1.41 6.98 -51.93 -0.36 1.05 16 39 H 0.05 0.68 7.52 -51.93 -0.39 0.28 16 40 H 0.06 0.73 8.04 -51.93 -0.42 0.32 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 44 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 45 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 48 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 49 H 0.06 0.80 7.03 -51.93 -0.37 0.44 16 50 H 0.06 1.10 7.50 -51.93 -0.39 0.71 16 51 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 LS Contribution 402.84 15.07 6.07 6.07 Total: -1.00 -28.63 402.84 -9.91 -38.54 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -8.83 Total: 8.64 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -0.37 Total: 6.67 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: -1.12 Total: -40.71 kcal Atomic # 8 Polarization: -32.23 SS G_CDS: -0.62 Total: -32.85 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.64 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -28.63 -9.91 -38.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871345009.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.185 kcal (2) G-P(sol) polarization free energy of solvation -28.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds