Wall clock time and date at job start Tue Mar 31 2020 22:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34229 * 117.00021 * 2 1 4 4 O 1.20826 * 119.99739 * 0.02562 * 3 2 1 5 5 C 1.50702 * 119.99672 * 180.02562 * 3 2 1 6 6 C 1.53004 * 109.46591 * 179.97438 * 5 3 2 7 7 N 1.46498 * 109.46808 * 180.02562 * 6 5 3 8 8 C 1.37105 * 119.99568 * 264.53719 * 7 6 5 9 9 H 1.08005 * 119.99619 * 145.99321 * 8 7 6 10 10 C 1.38951 * 119.99976 * 325.98869 * 8 7 6 11 11 N 1.31406 * 120.00118 * 337.83278 * 10 8 7 12 12 Si 1.86803 * 119.99565 * 157.83430 * 10 8 7 13 13 H 1.48493 * 109.47111 * 89.99913 * 12 10 8 14 14 H 1.48505 * 109.46738 * 209.99978 * 12 10 8 15 15 H 1.48495 * 109.47277 * 329.99789 * 12 10 8 16 16 C 1.34771 * 120.00397 * 84.53838 * 7 6 5 17 17 O 1.21293 * 119.99975 * 0.02562 * 16 7 6 18 18 C 1.50700 * 120.00204 * 179.97438 * 16 7 6 19 19 C 1.53506 * 114.17211 * 180.02562 * 18 16 7 20 20 N 1.47480 * 87.93559 * 220.14027 * 19 18 16 21 21 C 1.46900 * 111.00152 * 138.70232 * 20 19 18 22 22 C 1.52999 * 109.47156 * 180.02562 * 21 20 19 23 23 C 1.52996 * 109.47122 * 180.02562 * 22 21 20 24 24 C 1.53000 * 109.47467 * 59.99874 * 23 22 21 25 25 C 1.52999 * 109.47053 * 300.00168 * 24 23 22 26 26 C 1.52997 * 109.47103 * 59.99938 * 21 20 19 27 27 C 1.47479 * 87.83256 * 27.01241 * 20 19 18 28 28 H 1.09003 * 109.47217 * 60.00046 * 1 2 3 29 29 H 1.09007 * 109.46827 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46982 * 299.99894 * 1 2 3 31 31 H 1.09003 * 109.47021 * 60.00184 * 5 3 2 32 32 H 1.08994 * 109.46838 * 299.99682 * 5 3 2 33 33 H 1.08997 * 109.47220 * 59.99922 * 6 5 3 34 34 H 1.09005 * 109.47114 * 299.99894 * 6 5 3 35 35 H 0.96999 * 120.00002 * 179.97438 * 11 10 8 36 36 H 1.08998 * 113.25908 * 312.95269 * 18 16 7 37 37 H 1.09002 * 113.47960 * 105.37055 * 19 18 16 38 38 H 1.09004 * 113.53238 * 334.91566 * 19 18 16 39 39 H 1.09000 * 109.47087 * 300.00549 * 21 20 19 40 40 H 1.09002 * 109.47262 * 59.99860 * 22 21 20 41 41 H 1.09000 * 109.47350 * 300.00117 * 22 21 20 42 42 H 1.09001 * 109.47375 * 179.97438 * 23 22 21 43 43 H 1.09007 * 109.47042 * 299.99861 * 23 22 21 44 44 H 1.09007 * 109.47000 * 59.99962 * 24 23 22 45 45 H 1.09001 * 109.47542 * 179.97438 * 24 23 22 46 46 H 1.09002 * 109.47262 * 179.97438 * 25 24 23 47 47 H 1.09000 * 109.47350 * 299.99589 * 25 24 23 48 48 H 1.09007 * 109.46943 * 60.00154 * 26 21 20 49 49 H 1.08994 * 109.47527 * 300.00212 * 26 21 20 50 50 H 1.08992 * 113.48071 * 87.75652 * 27 20 19 51 51 H 1.09001 * 113.47236 * 218.22758 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0001 2.7420 -0.0011 7 7 5.4631 2.8187 -0.0023 8 6 6.1426 2.9676 1.1792 9 1 7.1098 2.5044 1.3079 10 6 5.5871 3.7144 2.2108 11 7 4.6676 4.6157 1.9482 12 14 6.1474 3.4371 3.9711 13 1 7.2928 4.3326 4.2729 14 1 5.0276 3.7355 4.8998 15 1 6.5670 2.0227 4.1401 16 6 6.1410 2.7429 -1.1646 17 8 5.5398 2.6116 -2.2099 18 6 7.6459 2.8223 -1.1659 19 6 8.2795 2.7224 -2.5605 20 7 9.3320 1.8794 -1.9635 21 6 9.6656 0.7516 -2.8437 22 6 10.7579 -0.0985 -2.1917 23 6 11.1058 -1.2727 -3.1087 24 6 11.6081 -0.7396 -4.4520 25 6 10.5157 0.1105 -5.1039 26 6 10.1671 1.2843 -4.1874 27 6 8.3507 1.4776 -0.9385 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.9557 0.7808 -0.8909 32 1 3.9563 0.7805 0.8891 33 1 3.6107 3.2364 0.8889 34 1 3.6100 3.2359 -0.8911 35 1 4.2795 5.1368 2.6684 36 1 8.0343 3.6386 -0.5570 37 1 8.6490 3.6756 -2.9388 38 1 7.6583 2.1942 -3.2839 39 1 8.7772 0.1406 -3.0039 40 1 10.4002 -0.4780 -1.2346 41 1 11.6464 0.5123 -2.0312 42 1 11.8843 -1.8781 -2.6445 43 1 10.2174 -1.8837 -3.2696 44 1 12.4964 -0.1286 -4.2911 45 1 11.8563 -1.5761 -5.1051 46 1 10.8737 0.4907 -6.0607 47 1 9.6275 -0.5004 -5.2648 48 1 11.0554 1.8953 -4.0273 49 1 9.3886 1.8896 -4.6517 50 1 7.7478 0.6170 -1.2282 51 1 8.7806 1.3757 0.0579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871345009.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:08 Heat of formation + Delta-G solvation = -115.136621 kcal Electronic energy + Delta-G solvation = -30568.073789 eV Core-core repulsion = 26467.430310 eV Total energy + Delta-G solvation = -4100.643479 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.90731 -41.51868 -39.95649 -38.25097 -37.61968 -36.76467 -33.84398 -32.83036 -31.95741 -31.71021 -28.91890 -28.00179 -26.96332 -26.88693 -25.22371 -23.25919 -23.05399 -21.84021 -21.29085 -20.74425 -20.48312 -19.02659 -18.56310 -17.88596 -17.63537 -17.53222 -16.99071 -16.55846 -16.23884 -16.02795 -15.64967 -15.38042 -15.16432 -15.02285 -14.76729 -14.65551 -14.41844 -14.11444 -13.80896 -13.65558 -13.59108 -13.48910 -13.12903 -13.07703 -12.93122 -12.77175 -12.67885 -12.51051 -12.35105 -12.10394 -12.01058 -11.97701 -11.88974 -11.80684 -11.63343 -11.53843 -11.43617 -11.11183 -10.96744 -10.84078 -10.37851 -9.87089 -9.56589 -8.30153 -6.03677 1.10109 1.43562 1.52006 1.61810 1.64704 1.95631 2.34733 2.81605 3.04921 3.14635 3.59169 3.78083 3.81294 3.85608 3.90269 4.05961 4.13039 4.23644 4.25751 4.28083 4.29776 4.30003 4.37494 4.46536 4.53785 4.57070 4.58958 4.60385 4.63947 4.67666 4.74262 4.77022 4.84353 4.97334 4.99994 5.06052 5.12287 5.20070 5.23542 5.24708 5.28609 5.32184 5.36116 5.39300 5.51310 5.54739 5.56633 5.93949 6.14617 6.41219 6.67171 7.12603 7.55704 7.98295 8.72542 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010053 B = 0.003277 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.480406 B = 8542.667362 C =10162.405470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.362 6.362 3 C 0.473 3.527 4 O -0.537 6.537 5 C -0.114 4.114 6 C 0.132 3.868 7 N -0.442 5.442 8 C -0.351 4.351 9 H 0.110 0.890 10 C 0.002 3.998 11 N -0.891 5.891 12 Si 0.978 3.022 13 H -0.272 1.272 14 H -0.288 1.288 15 H -0.252 1.252 16 C 0.468 3.532 17 O -0.633 6.633 18 C -0.119 4.119 19 C 0.029 3.971 20 N -0.464 5.464 21 C 0.049 3.951 22 C -0.101 4.101 23 C -0.116 4.116 24 C -0.116 4.116 25 C -0.115 4.115 26 C -0.111 4.111 27 C 0.033 3.967 28 H 0.059 0.941 29 H 0.139 0.861 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.098 0.902 34 H 0.030 0.970 35 H 0.271 0.729 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.035 0.965 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.051 0.949 50 H 0.061 0.939 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.816 -12.741 -5.164 15.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.278 6.278 3 C 0.317 3.683 4 O -0.427 6.427 5 C -0.152 4.152 6 C 0.007 3.993 7 N -0.158 5.158 8 C -0.478 4.478 9 H 0.127 0.873 10 C -0.201 4.201 11 N -0.528 5.528 12 Si 0.801 3.199 13 H -0.197 1.197 14 H -0.214 1.214 15 H -0.176 1.176 16 C 0.258 3.742 17 O -0.521 6.521 18 C -0.141 4.141 19 C -0.101 4.101 20 N -0.186 5.186 21 C -0.060 4.060 22 C -0.139 4.139 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.154 4.154 26 C -0.149 4.149 27 C -0.096 4.096 28 H 0.078 0.922 29 H 0.157 0.843 30 H 0.079 0.921 31 H 0.119 0.881 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.132 0.868 37 H 0.105 0.895 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.092 0.908 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.832 -12.115 -5.374 15.395 hybrid contribution -1.415 0.272 0.571 1.550 sum 6.417 -11.843 -4.803 14.301 Atomic orbital electron populations 1.23589 0.74747 1.05906 1.02449 1.86506 1.25182 1.32307 1.83851 1.23832 0.92107 0.81301 0.71059 1.90644 1.67834 1.37500 1.46695 1.21658 0.86855 1.00736 1.05978 1.20951 0.82586 0.92976 1.02744 1.43644 1.04409 1.61828 1.05957 1.19824 1.05689 1.32133 0.90133 0.87251 1.26219 0.96775 0.92898 1.04207 1.70067 1.28949 1.19297 1.34459 0.85164 0.77708 0.79759 0.77223 1.19740 1.21419 1.17597 1.20829 0.90544 0.79936 0.82876 1.90496 1.71389 1.57377 1.32830 1.22520 0.90753 1.01148 0.99630 1.23511 0.91938 0.99458 0.95155 1.68984 1.26874 1.14034 1.08668 1.22312 0.97939 0.91975 0.93782 1.21422 0.97879 0.96392 0.98233 1.21528 1.01269 0.96888 0.95721 1.21535 0.98008 0.99575 0.96234 1.21505 0.99136 0.96312 0.98399 1.21552 1.01122 0.98373 0.93859 1.23560 0.92426 0.94649 0.98968 0.92197 0.84326 0.92062 0.88115 0.86253 0.88459 0.95150 0.91960 0.86823 0.89451 0.91700 0.94698 0.92497 0.91301 0.90523 0.92422 0.91578 0.90763 0.90779 0.92533 0.91203 0.92987 0.92050 0.88323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 16 2 O -0.36 -11.40 10.57 -51.41 -0.54 -11.94 16 3 C 0.47 18.35 7.96 71.24 0.57 18.91 16 4 O -0.54 -24.12 15.73 21.96 0.35 -23.77 16 5 C -0.11 -4.56 6.10 29.85 0.18 -4.38 16 6 C 0.13 6.51 4.19 86.38 0.36 6.87 16 7 N -0.44 -21.59 2.56 -635.53 -1.63 -23.22 16 8 C -0.35 -16.67 8.54 84.04 0.72 -15.95 16 9 H 0.11 4.78 6.91 -2.91 -0.02 4.76 16 10 C 0.00 0.11 4.92 84.93 0.42 0.53 16 11 N -0.89 -47.45 11.34 21.66 0.25 -47.21 16 12 Si 0.98 37.91 29.61 68.60 2.03 39.94 16 13 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 14 H -0.29 -11.41 7.11 99.48 0.71 -10.70 16 15 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 16 C 0.47 22.15 7.17 87.66 0.63 22.78 16 17 O -0.63 -33.00 15.62 -3.07 -0.05 -33.05 16 18 C -0.12 -4.60 3.13 -11.20 -0.04 -4.64 16 19 C 0.03 0.97 5.79 83.57 0.48 1.46 16 20 N -0.46 -13.85 6.15 -902.55 -5.55 -19.40 16 21 C 0.05 1.24 1.60 44.91 0.07 1.31 16 22 C -0.10 -2.16 5.42 30.59 0.17 -1.99 16 23 C -0.12 -1.96 5.92 30.59 0.18 -1.78 16 24 C -0.12 -1.78 5.92 30.59 0.18 -1.60 16 25 C -0.12 -2.07 5.92 30.58 0.18 -1.89 16 26 C -0.11 -2.51 5.10 30.58 0.16 -2.35 16 27 C 0.03 1.08 6.71 83.57 0.56 1.64 16 28 H 0.06 1.40 8.13 -2.39 -0.02 1.38 16 29 H 0.14 2.00 8.14 -2.38 -0.02 1.98 16 30 H 0.06 1.42 8.13 -2.39 -0.02 1.40 16 31 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 32 H 0.12 4.38 8.14 -2.39 -0.02 4.36 16 33 H 0.10 5.25 5.31 -2.39 -0.01 5.23 16 34 H 0.03 1.65 7.55 -2.38 -0.02 1.63 16 35 H 0.27 13.75 8.31 -92.71 -0.77 12.98 16 36 H 0.11 4.54 7.84 -2.39 -0.02 4.52 16 37 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.06 2.40 6.98 -2.38 -0.02 2.38 16 39 H 0.03 0.99 7.52 -2.39 -0.02 0.97 16 40 H 0.06 1.25 8.04 -2.39 -0.02 1.24 16 41 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 44 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 47 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 48 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 49 H 0.05 1.28 7.03 -2.39 -0.02 1.27 16 50 H 0.06 2.05 7.50 -2.39 -0.02 2.03 16 51 H 0.10 2.98 8.06 -2.39 -0.02 2.96 16 Total: -1.00 -63.49 402.84 1.78 -61.71 By element: Atomic # 1 Polarization: 35.30 SS G_CDS: 0.90 Total: 36.20 kcal Atomic # 6 Polarization: 14.70 SS G_CDS: 6.02 Total: 20.72 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -6.93 Total: -89.82 kcal Atomic # 8 Polarization: -68.51 SS G_CDS: -0.25 Total: -68.76 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 2.03 Total: 39.94 kcal Total: -63.49 1.78 -61.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871345009.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.423 kcal (2) G-P(sol) polarization free energy of solvation -63.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds