Wall clock time and date at job start Tue Mar 31 2020 20:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47164 * 2 1 4 4 C 1.53002 * 109.46613 * 240.00225 * 2 1 3 5 5 O 1.45193 * 109.47160 * 120.00557 * 2 1 3 6 6 C 1.34226 * 117.00308 * 59.99963 * 5 2 1 7 7 O 1.20822 * 119.99884 * 359.97438 * 6 5 2 8 8 C 1.50705 * 120.00279 * 180.02562 * 6 5 2 9 9 H 1.09000 * 112.84473 * 311.19515 * 8 6 5 10 10 C 1.53780 * 113.61494 * 82.49890 * 8 6 5 11 11 C 1.53777 * 87.08249 * 139.98432 * 10 8 6 12 12 H 1.08998 * 113.68760 * 220.01340 * 11 10 8 13 13 N 1.46491 * 113.61730 * 89.11455 * 11 10 8 14 14 C 1.34775 * 119.99804 * 107.22669 * 13 11 10 15 15 O 1.21589 * 120.00307 * 355.16608 * 14 13 11 16 16 N 1.34778 * 119.99888 * 175.16522 * 14 13 11 17 17 C 1.46507 * 120.00205 * 185.03851 * 16 14 13 18 18 C 1.52994 * 109.47311 * 184.72927 * 17 16 14 19 19 C 1.50704 * 115.54746 * 64.84927 * 18 17 16 20 20 H 1.08003 * 119.99617 * 266.77551 * 19 18 17 21 21 C 1.37870 * 120.00320 * 86.78057 * 19 18 17 22 22 N 1.31508 * 120.00349 * 178.75206 * 21 19 18 23 23 Si 1.86802 * 119.99913 * 358.75306 * 21 19 18 24 24 H 1.48502 * 109.47104 * 91.38039 * 23 21 19 25 25 H 1.48501 * 109.47349 * 211.37751 * 23 21 19 26 26 H 1.48500 * 109.47036 * 331.37917 * 23 21 19 27 27 C 1.53003 * 117.50244 * 279.17697 * 18 17 16 28 28 C 1.52998 * 117.49932 * 210.51296 * 18 17 16 29 29 C 1.53780 * 113.61579 * 179.97438 * 8 6 5 30 30 H 1.09001 * 109.46967 * 299.99792 * 1 2 3 31 31 H 1.09001 * 109.47126 * 59.99107 * 1 2 3 32 32 H 1.08991 * 109.47198 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.46775 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.46989 * 300.00466 * 3 2 1 35 35 H 1.09004 * 109.46675 * 60.00649 * 3 2 1 36 36 H 1.08997 * 109.47588 * 299.99806 * 4 2 1 37 37 H 1.09003 * 109.47329 * 60.00341 * 4 2 1 38 38 H 1.09000 * 109.46785 * 179.97438 * 4 2 1 39 39 H 1.09004 * 113.61395 * 25.43244 * 10 8 6 40 40 H 1.08999 * 113.61445 * 254.53593 * 10 8 6 41 41 H 0.96997 * 120.00037 * 287.50693 * 13 11 10 42 42 H 0.97001 * 120.00154 * 5.03373 * 16 14 13 43 43 H 1.09003 * 109.46600 * 304.73400 * 17 16 14 44 44 H 1.09004 * 109.46642 * 64.72841 * 17 16 14 45 45 H 0.97006 * 120.00617 * 179.97438 * 22 21 19 46 46 H 1.08998 * 117.49482 * 359.97438 * 27 18 17 47 47 H 1.08996 * 117.49880 * 145.02056 * 27 18 17 48 48 H 1.09002 * 117.50174 * 214.97856 * 28 18 17 49 49 H 1.09003 * 117.50051 * 0.02562 * 28 18 17 50 50 H 1.09007 * 113.61012 * 105.46975 * 29 8 6 51 51 H 1.09003 * 113.69323 * 334.58307 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 8 2.0140 -0.6846 1.1854 6 6 1.6534 -1.9685 1.3377 7 8 0.9560 -2.5025 0.5081 8 6 2.1174 -2.7436 2.5439 9 1 3.1879 -2.6452 2.7241 10 6 1.2559 -2.5087 3.7959 11 6 1.4000 -4.0129 4.0812 12 1 0.4859 -4.4782 4.4499 13 7 2.5748 -4.3469 4.8901 14 6 2.4236 -4.7171 6.1772 15 8 1.3226 -4.6894 6.6924 16 7 3.4928 -5.1180 6.8931 17 6 3.3136 -5.6248 8.2560 18 6 4.6823 -5.8977 8.8828 19 6 5.5531 -4.6861 9.0951 20 1 6.2696 -4.3972 8.3404 21 6 5.4351 -3.9466 10.2527 22 7 6.2119 -2.9038 10.4489 23 14 4.1717 -4.4260 11.5425 24 1 4.7936 -5.3493 12.5253 25 1 3.6924 -3.2074 12.2429 26 1 3.0249 -5.1023 10.8848 27 6 5.3766 -7.2117 8.5192 28 6 4.7751 -7.0238 9.9143 29 6 1.6190 -4.1981 2.5707 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6768 1.9563 0.8901 36 1 1.6766 -1.7489 -1.2494 37 1 1.6766 -0.2073 -2.1393 38 1 3.1299 -0.7208 -1.2496 39 1 0.2341 -2.2026 3.5717 40 1 1.7344 -1.8748 4.5425 41 1 3.4618 -4.2977 4.5006 42 1 4.3810 -5.0711 6.5060 43 1 2.7820 -4.8832 8.8524 44 1 2.7365 -6.5491 8.2269 45 1 6.1287 -2.3832 11.2632 46 1 4.8580 -7.8820 7.8338 47 1 6.4632 -7.2000 8.4340 48 1 5.4663 -6.8887 10.7462 49 1 3.8611 -7.5706 10.1461 50 1 2.3907 -4.9286 2.3279 51 1 0.6965 -4.3554 2.0117 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872995025.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:04 Heat of formation + Delta-G solvation = -94.360374 kcal Electronic energy + Delta-G solvation = -29568.086042 eV Core-core repulsion = 25468.343489 eV Total energy + Delta-G solvation = -4099.742553 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.17509 -41.13645 -39.68494 -38.64333 -37.68037 -35.07233 -34.98976 -34.21801 -33.84706 -28.65108 -28.38641 -28.31463 -27.75401 -26.78102 -26.67828 -23.43471 -23.24271 -22.05357 -21.10741 -20.95319 -20.14361 -19.43550 -18.38084 -18.16743 -17.56016 -17.15263 -17.04143 -16.86256 -16.37302 -15.98637 -15.78336 -15.49814 -15.31665 -14.89499 -14.78377 -14.67301 -14.51945 -14.31069 -13.88306 -13.55102 -13.48645 -13.38541 -13.07902 -13.07298 -12.99703 -12.90216 -12.86767 -12.61567 -12.46676 -12.16221 -12.06761 -11.95267 -11.78672 -11.60837 -11.55684 -11.39136 -11.30348 -10.95742 -10.90003 -10.63429 -10.35191 -10.21190 -9.61171 -8.28042 -6.33556 1.16270 1.34895 1.41554 1.51539 1.70390 1.77370 2.21183 2.38390 3.07505 3.14234 3.29925 3.41122 3.52193 3.67886 3.76059 3.78466 3.80450 3.94960 4.07809 4.08268 4.40711 4.46114 4.54281 4.57578 4.57933 4.59241 4.66911 4.73851 4.75039 4.79334 4.83160 4.85901 4.89535 4.91023 4.94144 4.96271 5.07295 5.11537 5.14144 5.24622 5.28094 5.35442 5.52923 5.56251 5.63360 5.69272 5.73062 6.13733 6.30803 6.74837 6.81731 7.21800 7.36945 7.67999 8.86546 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.018174 B = 0.002142 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.289492 B =13068.215730 C =13699.489044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.103 3.897 3 C -0.139 4.139 4 C -0.178 4.178 5 O -0.359 6.359 6 C 0.476 3.524 7 O -0.520 6.520 8 C -0.108 4.108 9 H 0.139 0.861 10 C -0.133 4.133 11 C 0.140 3.860 12 H 0.094 0.906 13 N -0.716 5.716 14 C 0.701 3.299 15 O -0.641 6.641 16 N -0.717 5.717 17 C 0.184 3.816 18 C -0.040 4.040 19 C -0.474 4.474 20 H 0.046 0.954 21 C 0.025 3.975 22 N -0.945 5.945 23 Si 0.927 3.073 24 H -0.267 1.267 25 H -0.305 1.305 26 H -0.240 1.240 27 C -0.149 4.149 28 C -0.194 4.194 29 C -0.107 4.107 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.412 0.588 42 H 0.408 0.592 43 H 0.032 0.968 44 H 0.055 0.945 45 H 0.263 0.737 46 H 0.105 0.895 47 H 0.085 0.915 48 H 0.077 0.923 49 H 0.099 0.901 50 H 0.101 0.899 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.639 1.797 -23.351 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.068 3.932 3 C -0.196 4.196 4 C -0.235 4.235 5 O -0.276 6.276 6 C 0.320 3.680 7 O -0.409 6.409 8 C -0.127 4.127 9 H 0.157 0.843 10 C -0.172 4.172 11 C 0.033 3.967 12 H 0.112 0.888 13 N -0.371 5.371 14 C 0.401 3.599 15 O -0.523 6.523 16 N -0.370 5.370 17 C 0.059 3.941 18 C -0.042 4.042 19 C -0.512 4.512 20 H 0.065 0.935 21 C -0.173 4.173 22 N -0.585 5.585 23 Si 0.753 3.247 24 H -0.192 1.192 25 H -0.233 1.233 26 H -0.164 1.164 27 C -0.186 4.186 28 C -0.231 4.231 29 C -0.145 4.145 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.082 0.918 39 H 0.116 0.884 40 H 0.094 0.906 41 H 0.248 0.752 42 H 0.243 0.757 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.072 0.928 46 H 0.123 0.877 47 H 0.104 0.896 48 H 0.096 0.904 49 H 0.117 0.883 50 H 0.119 0.881 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.790 1.790 -23.038 25.095 hybrid contribution 0.490 0.537 0.681 0.996 sum -9.300 2.326 -22.356 24.325 Atomic orbital electron populations 1.22458 0.93920 1.03679 1.03634 1.22495 0.94685 0.93332 0.82732 1.21883 1.02350 0.91345 1.04008 1.22446 1.01771 1.02126 0.97204 1.86590 1.69671 1.25504 1.45851 1.23694 0.76767 0.80554 0.86942 1.90556 1.36150 1.70419 1.43782 1.22726 1.03348 0.95865 0.90755 0.84329 1.23393 1.00562 0.98015 0.95272 1.21557 0.89083 0.95165 0.90850 0.88826 1.44582 1.10370 1.72881 1.09293 1.16116 0.84190 0.77810 0.81831 1.90853 1.26547 1.63300 1.71594 1.44863 1.08750 1.67889 1.15506 1.20739 0.95769 0.96604 0.81008 1.19461 0.93813 0.89449 1.01447 1.20359 1.18809 1.08789 1.03199 0.93546 1.25692 0.96874 0.94487 1.00258 1.70010 1.40940 1.19764 1.27819 0.86066 0.81462 0.77286 0.79860 1.19210 1.23294 1.16361 1.22874 0.99782 0.99031 0.96914 1.23024 1.02863 1.03627 0.93631 1.23249 1.04058 0.93662 0.93503 0.92117 0.89211 0.91707 0.91371 0.88298 0.91649 0.91703 0.89246 0.91820 0.88434 0.90592 0.75173 0.75682 0.94932 0.92661 0.92782 0.87671 0.89608 0.90444 0.88310 0.88071 0.87255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 8.37 71.98 0.60 -2.19 16 2 C 0.10 1.65 1.13 -10.79 -0.01 1.64 16 3 C -0.14 -1.61 8.85 71.98 0.64 -0.97 16 4 C -0.18 -2.64 8.37 71.98 0.60 -2.03 16 5 O -0.36 -7.21 9.89 -51.37 -0.51 -7.72 16 6 C 0.48 9.54 6.79 71.24 0.48 10.03 16 7 O -0.52 -11.92 11.40 21.98 0.25 -11.67 16 8 C -0.11 -1.80 4.14 -11.01 -0.05 -1.85 16 9 H 0.14 1.90 8.14 -2.39 -0.02 1.88 16 10 C -0.13 -2.64 7.43 31.12 0.23 -2.41 16 11 C 0.14 2.97 4.29 45.51 0.20 3.17 16 12 H 0.09 2.35 7.53 -2.39 -0.02 2.33 16 13 N -0.72 -17.13 5.27 -455.37 -2.40 -19.53 16 14 C 0.70 24.14 8.55 179.05 1.53 25.68 16 15 O -0.64 -27.50 15.97 -3.99 -0.06 -27.56 16 16 N -0.72 -25.03 5.46 -478.52 -2.61 -27.64 16 17 C 0.18 7.38 5.14 86.38 0.44 7.82 16 18 C -0.04 -1.68 0.81 -52.93 -0.04 -1.72 16 19 C -0.47 -24.69 9.29 25.60 0.24 -24.46 16 20 H 0.05 2.64 8.06 -2.91 -0.02 2.62 16 21 C 0.02 1.38 5.47 84.65 0.46 1.85 16 22 N -0.95 -57.34 13.96 21.44 0.30 -57.04 16 23 Si 0.93 44.18 24.88 68.60 1.71 45.89 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.31 -15.02 7.11 99.48 0.71 -14.31 16 26 H -0.24 -10.77 5.73 99.48 0.57 -10.20 16 27 C -0.15 -5.07 9.96 30.62 0.30 -4.76 16 28 C -0.19 -7.25 7.60 30.62 0.23 -7.02 16 29 C -0.11 -1.67 7.15 31.11 0.22 -1.45 16 30 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 1.27 5.89 -2.39 -0.01 1.26 16 33 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.06 1.23 5.89 -2.39 -0.01 1.21 16 37 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.10 1.85 8.09 -2.38 -0.02 1.83 16 40 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.41 7.38 8.72 -92.71 -0.81 6.57 16 42 H 0.41 12.75 8.46 -92.71 -0.78 11.96 16 43 H 0.03 1.52 6.61 -2.39 -0.02 1.50 16 44 H 0.06 2.05 8.09 -2.38 -0.02 2.03 16 45 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 46 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 47 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 48 H 0.08 3.11 7.28 -2.39 -0.02 3.10 16 49 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 50 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 51 H 0.11 1.79 7.44 -2.39 -0.02 1.77 16 Total: -1.00 -71.27 406.34 1.97 -69.30 By element: Atomic # 1 Polarization: 35.44 SS G_CDS: -0.79 Total: 34.65 kcal Atomic # 6 Polarization: -4.77 SS G_CDS: 6.09 Total: 1.32 kcal Atomic # 7 Polarization: -99.50 SS G_CDS: -4.71 Total: -104.21 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -0.32 Total: -46.95 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.71 Total: 45.89 kcal Total: -71.27 1.97 -69.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872995025.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.059 kcal (2) G-P(sol) polarization free energy of solvation -71.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds