Wall clock time and date at job start Tue Mar 31 2020 20:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45201 * 109.46744 * 2 1 4 4 C 1.34237 * 116.99744 * 179.97438 * 3 2 1 5 5 O 1.20824 * 119.99591 * 359.97438 * 4 3 2 6 6 C 1.50696 * 119.99965 * 179.97438 * 4 3 2 7 7 H 1.08997 * 109.47219 * 300.00165 * 6 4 3 8 8 C 1.53000 * 109.47098 * 59.99985 * 6 4 3 9 9 C 1.53003 * 109.47143 * 180.02562 * 6 4 3 10 10 C 1.53489 * 114.20741 * 180.02562 * 9 6 4 11 11 N 1.47059 * 87.98527 * 220.34674 * 10 9 6 12 12 C 1.34775 * 136.05760 * 207.08690 * 11 10 9 13 13 O 1.21590 * 120.00265 * 359.97438 * 12 11 10 14 14 N 1.34780 * 120.00126 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99915 * 180.02562 * 14 12 11 16 16 H 1.08998 * 110.05453 * 326.40507 * 15 14 12 17 17 C 1.53876 * 110.03592 * 87.83027 * 15 14 12 18 18 C 1.54268 * 106.59607 * 119.28350 * 17 15 14 19 19 C 1.54882 * 104.19992 * 23.60931 * 18 17 15 20 20 H 1.09004 * 110.75771 * 80.36858 * 19 18 17 21 21 C 1.50694 * 110.75918 * 203.74378 * 19 18 17 22 22 H 1.08002 * 120.00343 * 113.33094 * 21 19 18 23 23 C 1.37884 * 119.99869 * 293.32699 * 21 19 18 24 24 N 1.31509 * 119.99758 * 0.02562 * 23 21 19 25 25 Si 1.86798 * 120.00064 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47219 * 0.02562 * 25 23 21 27 27 H 1.48495 * 109.47051 * 120.00122 * 25 23 21 28 28 H 1.48495 * 109.47382 * 240.00036 * 25 23 21 29 29 C 1.54268 * 110.02713 * 204.99764 * 15 14 12 30 30 C 1.47064 * 87.88716 * 27.34057 * 11 10 9 31 31 H 1.08996 * 109.46892 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47720 * 300.00290 * 1 2 3 33 33 H 1.09003 * 109.47049 * 60.00537 * 1 2 3 34 34 H 1.08994 * 109.47720 * 239.99710 * 2 1 3 35 35 H 1.08997 * 109.46633 * 119.99289 * 2 1 3 36 36 H 1.09005 * 109.47124 * 59.99802 * 8 6 4 37 37 H 1.09005 * 109.47144 * 179.97438 * 8 6 4 38 38 H 1.08997 * 109.47507 * 300.00254 * 8 6 4 39 39 H 1.08999 * 113.27708 * 313.06430 * 9 6 4 40 40 H 1.08992 * 113.47216 * 105.56089 * 10 9 6 41 41 H 1.09005 * 113.46748 * 335.12011 * 10 9 6 42 42 H 0.97000 * 119.99881 * 359.97438 * 14 12 11 43 43 H 1.08994 * 110.02975 * 238.56590 * 17 15 14 44 44 H 1.08998 * 110.02933 * 0.02562 * 17 15 14 45 45 H 1.09003 * 110.48471 * 264.93239 * 18 17 15 46 46 H 1.09004 * 110.48268 * 142.29006 * 18 17 15 47 47 H 0.97007 * 119.99881 * 179.97438 * 24 23 21 48 48 H 1.08999 * 110.49069 * 98.42820 * 29 15 14 49 49 H 1.08996 * 110.48777 * 335.78124 * 29 15 14 50 50 H 1.09003 * 113.46744 * 87.44268 * 30 11 10 51 51 H 1.08999 * 113.46747 * 217.88160 * 30 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9207 2.9375 0.0000 7 1 3.5851 3.4691 -0.8904 8 6 3.4485 3.6851 1.2486 9 6 5.4486 2.8574 0.0001 10 6 6.1503 4.2225 0.0002 11 7 7.1230 3.6645 -0.9512 12 6 8.4103 3.9001 -1.2733 13 8 9.0309 4.7734 -0.6985 14 7 9.0098 3.1675 -2.2328 15 6 10.4093 3.4233 -2.5825 16 1 10.6325 4.4851 -2.4787 17 6 11.3387 2.5980 -1.6754 18 6 12.1464 1.6666 -2.6028 19 6 12.1185 2.3811 -3.9767 20 1 12.8613 3.1781 -4.0128 21 6 12.3356 1.3955 -5.0958 22 1 11.5386 1.1873 -5.7942 23 6 13.5519 0.7597 -5.2281 24 7 14.5223 1.0130 -4.3774 25 14 13.8208 -0.4626 -6.6149 26 1 12.5826 -0.5694 -7.4277 27 1 14.9383 0.0027 -7.4750 28 1 14.1555 -1.7923 -6.0449 29 6 10.6846 2.9645 -4.0295 30 6 6.0709 2.7405 -1.4009 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5137 0.8900 36 1 3.7840 3.1535 2.1391 37 1 3.8655 4.6923 1.2484 38 1 2.3600 3.7422 1.2481 39 1 5.8430 2.1525 0.7320 40 1 6.5872 4.4860 0.9634 41 1 5.5421 5.0233 -0.4205 42 1 8.5149 2.4705 -2.6912 43 1 12.0130 3.2593 -1.1313 44 1 10.7485 2.0069 -0.9752 45 1 11.6689 0.6891 -2.6714 46 1 13.1713 1.5674 -2.2451 47 1 15.3779 0.5654 -4.4703 48 1 10.6428 3.8125 -4.7131 49 1 9.9711 2.1967 -4.3285 50 1 5.4418 3.1505 -2.1910 51 1 6.4403 1.7413 -1.6314 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875636278.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:31 Heat of formation + Delta-G solvation = -96.308835 kcal Electronic energy + Delta-G solvation = -29322.979379 eV Core-core repulsion = 25223.152335 eV Total energy + Delta-G solvation = -4099.827045 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.29721 -40.31072 -38.68175 -37.07739 -36.71535 -34.18149 -33.51992 -32.08450 -31.86149 -29.05513 -28.07925 -26.97996 -26.18457 -25.26988 -23.94066 -23.51871 -22.15917 -20.45517 -19.90314 -19.56158 -18.97437 -18.01960 -17.75614 -17.15909 -16.90026 -16.60195 -15.85337 -15.68517 -14.96593 -14.81416 -14.55680 -14.28022 -14.06588 -13.87381 -13.79256 -13.43206 -13.21472 -12.98446 -12.67455 -12.63023 -12.57574 -12.35049 -12.30288 -12.06385 -11.98330 -11.74186 -11.43331 -11.08929 -10.98380 -10.95777 -10.91871 -10.89052 -10.61269 -10.52256 -10.26684 -9.94999 -9.77172 -9.51720 -9.19118 -8.87602 -8.77793 -8.39229 -8.33171 -5.99104 -4.02002 1.82826 2.17842 2.56709 3.30592 3.38800 3.40670 3.41983 3.79428 4.05208 4.20326 4.26276 4.45532 4.46393 4.51437 4.65322 4.71453 4.78118 4.81036 5.02148 5.10330 5.18433 5.26101 5.28652 5.29738 5.32903 5.33284 5.40220 5.49695 5.53352 5.64173 5.69465 5.73823 5.89261 5.90301 6.06664 6.37593 6.41510 6.64711 6.71880 6.79577 6.94506 7.00430 7.29151 7.31908 7.36662 7.44215 7.72782 7.89598 8.04543 8.22871 8.45575 8.85100 9.00692 9.61900 11.10604 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.014391 B = 0.002074 C = 0.001867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.225942 B =13496.167076 C =14993.812752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.061 3.939 3 O -0.358 6.358 4 C 0.465 3.535 5 O -0.500 6.500 6 C -0.070 4.070 7 H 0.115 0.885 8 C -0.145 4.145 9 C -0.113 4.113 10 C 0.135 3.865 11 N -0.669 5.669 12 C 0.733 3.267 13 O -0.590 6.590 14 N -0.729 5.729 15 C 0.156 3.844 16 H 0.080 0.920 17 C -0.135 4.135 18 C -0.102 4.102 19 C 0.051 3.949 20 H 0.036 0.964 21 C -0.513 4.513 22 H 0.056 0.944 23 C 0.062 3.938 24 N -0.888 5.888 25 Si 0.889 3.111 26 H -0.274 1.274 27 H -0.285 1.285 28 H -0.285 1.285 29 C -0.121 4.121 30 C 0.104 3.896 31 H 0.079 0.921 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.393 0.607 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.046 0.954 46 H 0.065 0.935 47 H 0.259 0.741 48 H 0.053 0.947 49 H 0.059 0.941 50 H 0.082 0.918 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.530 2.491 10.714 31.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.276 6.276 4 C 0.307 3.693 5 O -0.386 6.386 6 C -0.090 4.090 7 H 0.132 0.868 8 C -0.203 4.203 9 C -0.132 4.132 10 C 0.011 3.989 11 N -0.409 5.409 12 C 0.437 3.563 13 O -0.468 6.468 14 N -0.382 5.382 15 C 0.052 3.948 16 H 0.098 0.902 17 C -0.174 4.174 18 C -0.140 4.140 19 C 0.033 3.967 20 H 0.054 0.946 21 C -0.551 4.551 22 H 0.074 0.926 23 C -0.140 4.140 24 N -0.526 5.526 25 Si 0.717 3.283 26 H -0.199 1.199 27 H -0.211 1.211 28 H -0.211 1.211 29 C -0.159 4.159 30 C -0.020 4.020 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.135 0.865 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.226 0.774 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.065 0.935 46 H 0.084 0.916 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.078 0.922 50 H 0.100 0.900 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -28.385 2.825 11.102 30.610 hybrid contribution -0.028 -1.344 -1.014 1.684 sum -28.413 1.482 10.088 30.187 Atomic orbital electron populations 1.21809 0.92543 1.03088 1.03534 1.23050 0.95405 0.80083 1.02777 1.86495 1.24538 1.32516 1.84004 1.23680 0.80600 0.92612 0.72395 1.90710 1.60343 1.43015 1.44559 1.20998 0.94687 0.90347 1.02960 0.86762 1.21777 1.02348 1.00696 0.95440 1.23006 0.91458 0.99292 0.99423 1.22741 0.87279 0.94933 0.93965 1.48545 1.08253 1.41090 1.43055 1.15319 0.78938 0.81617 0.80458 1.90908 1.63428 1.35983 1.56526 1.45494 1.14185 1.38972 1.39544 1.21771 0.77368 0.99833 0.95812 0.90177 1.22661 0.97986 0.98691 0.98062 1.22335 0.98725 0.96790 0.96195 1.19564 0.89349 0.94897 0.92926 0.94587 1.21129 0.98039 1.23733 1.12185 0.92626 1.24990 0.96122 0.96865 0.96006 1.69973 1.03743 1.42748 1.36177 0.86586 0.78096 0.81215 0.82373 1.19851 1.21092 1.21113 1.22766 1.01388 0.99485 0.92235 1.23062 0.87791 0.95083 0.96028 0.90178 0.91465 0.91421 0.91082 0.91177 0.91751 0.90469 0.90951 0.86495 0.90070 0.89984 0.77372 0.92540 0.93239 0.93545 0.91596 0.93119 0.92794 0.92220 0.90035 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 10.29 37.16 0.38 -0.20 16 2 C 0.06 0.38 6.19 37.16 0.23 0.61 16 3 O -0.36 -2.68 10.12 -39.28 -0.40 -3.08 16 4 C 0.46 3.85 7.26 36.00 0.26 4.11 16 5 O -0.50 -5.73 15.58 -18.75 -0.29 -6.02 16 6 C -0.07 -0.40 2.64 -91.77 -0.24 -0.64 16 7 H 0.11 0.46 7.89 -51.93 -0.41 0.05 16 8 C -0.15 -0.61 8.93 37.16 0.33 -0.28 16 9 C -0.11 -0.88 2.92 -89.97 -0.26 -1.14 16 10 C 0.13 1.21 7.26 -8.52 -0.06 1.15 16 11 N -0.67 -8.56 3.69 -190.88 -0.70 -9.27 16 12 C 0.73 12.68 8.79 -86.92 -0.76 11.92 16 13 O -0.59 -12.52 16.77 5.29 0.09 -12.43 16 14 N -0.73 -12.20 4.99 -57.58 -0.29 -12.49 16 15 C 0.16 3.01 3.25 -66.81 -0.22 2.79 16 16 H 0.08 1.63 7.56 -51.93 -0.39 1.24 16 17 C -0.14 -2.78 6.59 -25.61 -0.17 -2.95 16 18 C -0.10 -2.41 5.75 -25.07 -0.14 -2.55 16 19 C 0.05 1.28 2.73 -89.78 -0.24 1.03 16 20 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 21 C -0.51 -13.95 8.49 -34.44 -0.29 -14.24 16 22 H 0.06 1.49 7.77 -52.49 -0.41 1.08 16 23 C 0.06 1.72 5.36 -17.82 -0.10 1.62 16 24 N -0.89 -25.68 12.41 55.43 0.69 -24.99 16 25 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 26 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 28 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 29 C -0.12 -2.46 5.94 -25.07 -0.15 -2.61 16 30 C 0.10 0.96 7.86 -8.38 -0.07 0.90 16 31 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.46 8.13 -51.93 -0.42 0.04 16 35 H 0.07 0.44 8.13 -51.93 -0.42 0.02 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.08 0.25 7.48 -51.93 -0.39 -0.14 16 38 H 0.07 0.27 8.11 -51.93 -0.42 -0.15 16 39 H 0.12 1.09 7.81 -51.93 -0.41 0.68 16 40 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 42 H 0.39 5.76 8.07 -40.82 -0.33 5.43 16 43 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 44 H 0.05 0.98 7.92 -51.93 -0.41 0.57 16 45 H 0.05 1.12 8.04 -51.93 -0.42 0.70 16 46 H 0.07 1.69 7.63 -51.93 -0.40 1.30 16 47 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 48 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 49 H 0.06 1.17 7.63 -51.93 -0.40 0.78 16 50 H 0.08 0.60 7.93 -51.93 -0.41 0.18 16 51 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 414.49 15.07 6.25 6.25 Total: -1.00 -34.23 414.49 -10.18 -44.40 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -8.99 Total: 1.84 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -1.50 Total: -0.48 kcal Atomic # 7 Polarization: -46.44 SS G_CDS: -0.30 Total: -46.74 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.60 Total: -21.53 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.23 -10.18 -44.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875636278.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.908 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds