Wall clock time and date at job start Tue Mar 31 2020 22:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34235 * 116.99647 * 2 1 4 4 O 1.20827 * 120.00045 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99960 * 180.02562 * 3 2 1 6 6 C 1.52995 * 109.47405 * 179.97438 * 5 3 2 7 7 N 1.46493 * 109.47465 * 179.97438 * 6 5 3 8 8 C 1.36944 * 120.00222 * 264.50952 * 7 6 5 9 9 H 1.07991 * 119.99986 * 146.70271 * 8 7 6 10 10 C 1.38816 * 119.99614 * 326.70089 * 8 7 6 11 11 N 1.31617 * 120.00175 * 337.16696 * 10 8 7 12 12 Si 1.86802 * 119.99574 * 157.16280 * 10 8 7 13 13 H 1.48498 * 109.46875 * 90.00054 * 12 10 8 14 14 H 1.48496 * 109.47052 * 210.00183 * 12 10 8 15 15 H 1.48502 * 109.46955 * 330.00148 * 12 10 8 16 16 C 1.46502 * 120.00052 * 84.50915 * 7 6 5 17 17 H 1.08998 * 110.43494 * 358.91017 * 16 7 6 18 18 C 1.54632 * 110.48622 * 236.23210 * 16 7 6 19 19 C 1.54659 * 101.68236 * 216.30790 * 18 16 7 20 20 N 1.46763 * 105.38396 * 25.76455 * 19 18 16 21 21 C 1.46500 * 124.34821 * 162.85507 * 20 19 18 22 22 C 1.53002 * 109.47188 * 239.72214 * 21 20 19 23 23 C 1.52993 * 109.47420 * 180.02562 * 22 21 20 24 24 C 1.53002 * 109.47237 * 60.00188 * 23 22 21 25 25 C 1.52998 * 109.47222 * 300.00446 * 24 23 22 26 26 C 1.53001 * 109.47511 * 59.99436 * 25 24 23 27 27 C 1.34420 * 111.29996 * 342.59142 * 20 19 18 28 28 O 1.21286 * 124.93963 * 180.65722 * 27 20 19 29 29 H 1.08992 * 109.47725 * 60.00054 * 1 2 3 30 30 H 1.08999 * 109.47168 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47070 * 299.99502 * 1 2 3 32 32 H 1.08996 * 109.47491 * 59.99457 * 5 3 2 33 33 H 1.09009 * 109.46805 * 299.99593 * 5 3 2 34 34 H 1.09005 * 109.47031 * 59.99527 * 6 5 3 35 35 H 1.09002 * 109.46937 * 299.99944 * 6 5 3 36 36 H 0.97000 * 119.99608 * 180.02562 * 11 10 8 37 37 H 1.09002 * 110.96887 * 334.63554 * 18 16 7 38 38 H 1.08998 * 110.97266 * 98.39958 * 18 16 7 39 39 H 1.09000 * 110.39934 * 266.73732 * 19 18 16 40 40 H 1.09002 * 110.18393 * 144.67711 * 19 18 16 41 41 H 1.08997 * 109.47701 * 359.72336 * 21 20 19 42 42 H 1.09005 * 109.46845 * 60.00123 * 22 21 20 43 43 H 1.09004 * 109.47529 * 300.00510 * 22 21 20 44 44 H 1.08997 * 109.47680 * 180.02562 * 23 22 21 45 45 H 1.09004 * 109.47138 * 300.00691 * 23 22 21 46 46 H 1.09000 * 109.47104 * 60.00040 * 24 23 22 47 47 H 1.08992 * 109.47460 * 180.02562 * 24 23 22 48 48 H 1.09000 * 109.46750 * 299.99811 * 25 24 23 49 49 H 1.08995 * 109.47715 * 180.02562 * 25 24 23 50 50 H 1.08995 * 109.47545 * 180.02562 * 26 25 24 51 51 H 1.09004 * 109.46905 * 59.99909 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 6 4.0000 2.7422 -0.0011 7 7 5.4629 2.8190 -0.0011 8 6 6.1408 2.9686 1.1794 9 1 7.1128 2.5152 1.3052 10 6 5.5783 3.7031 2.2144 11 7 4.6569 4.6065 1.9552 12 14 6.1291 3.4092 3.9750 13 1 7.2709 4.3041 4.2923 14 1 5.0035 3.6958 4.9002 15 1 6.5509 1.9940 4.1319 16 6 6.2009 2.7356 -1.2639 17 1 5.5130 2.5994 -2.0984 18 6 7.2305 1.5831 -1.2140 19 6 8.4086 2.1805 -2.0185 20 7 8.2750 3.6357 -1.8820 21 6 9.3458 4.5943 -2.1660 22 6 9.6570 5.4002 -0.9032 23 6 10.7748 6.4018 -1.1998 24 6 10.3270 7.3510 -2.3131 25 6 10.0157 6.5452 -3.5759 26 6 8.8979 5.5435 -3.2792 27 6 7.0422 3.9762 -1.4684 28 8 6.6601 5.1126 -1.2855 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8900 32 1 3.9557 0.7811 -0.8907 33 1 3.9563 0.7808 0.8893 34 1 3.6105 3.2366 0.8889 35 1 3.6099 3.2361 -0.8911 36 1 4.2642 5.1200 2.6784 37 1 7.5245 1.3668 -0.1869 38 1 6.8407 0.6903 -1.7028 39 1 8.3375 1.8920 -3.0672 40 1 9.3578 1.8479 -1.5986 41 1 10.2395 4.0572 -2.4836 42 1 9.9757 4.7239 -0.1099 43 1 8.7633 5.9373 -0.5854 44 1 10.9969 6.9756 -0.3002 45 1 11.6687 5.8650 -1.5179 46 1 9.4332 7.8877 -1.9952 47 1 11.1235 8.0642 -2.5248 48 1 10.9095 6.0084 -3.8938 49 1 9.6971 7.2213 -4.3692 50 1 8.6764 4.9691 -4.1787 51 1 8.0040 6.0803 -2.9612 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879471827.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:04 Heat of formation + Delta-G solvation = -127.591833 kcal Electronic energy + Delta-G solvation = -31356.497716 eV Core-core repulsion = 27255.314139 eV Total energy + Delta-G solvation = -4101.183577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.51058 -41.32308 -38.97564 -37.74103 -37.23834 -36.65105 -33.73616 -33.14732 -31.68377 -31.35802 -29.15961 -28.56144 -27.85798 -26.19383 -24.03786 -23.51148 -23.37939 -22.16782 -21.48451 -20.89953 -19.86079 -18.84830 -18.19267 -17.62772 -17.45076 -17.35302 -17.11374 -16.78905 -16.04132 -15.64523 -15.40282 -15.22434 -14.94439 -14.82366 -14.78566 -14.52274 -14.36574 -14.17309 -13.88890 -13.62754 -13.46700 -13.25712 -13.11201 -13.07735 -12.86278 -12.74675 -12.64995 -12.49363 -12.37455 -12.27872 -12.02952 -12.01621 -11.78403 -11.62788 -11.56447 -11.50122 -11.41266 -11.21747 -11.13557 -10.68357 -10.19950 -9.36376 -8.59548 -7.82609 -5.41362 1.26246 1.42339 1.44702 1.54093 1.78645 2.01733 2.33447 2.50651 3.26318 3.57202 3.66376 3.84192 3.96892 3.98925 4.04696 4.09185 4.27817 4.29717 4.31911 4.35360 4.35690 4.40728 4.42988 4.45429 4.57432 4.59791 4.61200 4.64136 4.71559 4.77845 4.81761 4.84031 4.92390 5.08713 5.14437 5.18920 5.20603 5.27133 5.28284 5.31187 5.39258 5.43067 5.46520 5.53738 5.69851 5.82508 6.04752 6.39549 6.50322 6.82768 7.12021 7.65488 7.81265 8.31757 9.15354 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.003605 C = 0.003141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.489876 B = 7765.216743 C = 8911.234936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.466 3.534 4 O -0.546 6.546 5 C -0.114 4.114 6 C 0.164 3.836 7 N -0.565 5.565 8 C -0.255 4.255 9 H 0.072 0.928 10 C -0.041 4.041 11 N -0.911 5.911 12 Si 0.951 3.049 13 H -0.294 1.294 14 H -0.298 1.298 15 H -0.254 1.254 16 C 0.125 3.875 17 H 0.093 0.907 18 C -0.131 4.131 19 C 0.109 3.891 20 N -0.627 5.627 21 C 0.163 3.837 22 C -0.132 4.132 23 C -0.106 4.106 24 C -0.122 4.122 25 C -0.105 4.105 26 C -0.130 4.130 27 C 0.497 3.503 28 O -0.570 6.570 29 H 0.060 0.940 30 H 0.137 0.863 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.069 0.931 35 H 0.011 0.989 36 H 0.245 0.755 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.118 0.882 42 H 0.051 0.949 43 H 0.025 0.975 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.031 0.969 47 H 0.085 0.915 48 H 0.090 0.910 49 H 0.068 0.932 50 H 0.070 0.930 51 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.261 -10.290 -11.532 18.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.436 6.436 5 C -0.153 4.153 6 C 0.037 3.963 7 N -0.284 5.284 8 C -0.385 4.385 9 H 0.090 0.910 10 C -0.239 4.239 11 N -0.554 5.554 12 Si 0.779 3.221 13 H -0.221 1.221 14 H -0.224 1.224 15 H -0.177 1.177 16 C 0.014 3.986 17 H 0.111 0.889 18 C -0.170 4.170 19 C -0.013 4.013 20 N -0.361 5.361 21 C 0.061 3.939 22 C -0.170 4.170 23 C -0.144 4.144 24 C -0.159 4.159 25 C -0.143 4.143 26 C -0.168 4.168 27 C 0.284 3.716 28 O -0.448 6.448 29 H 0.079 0.921 30 H 0.155 0.845 31 H 0.071 0.929 32 H 0.140 0.860 33 H 0.126 0.874 34 H 0.087 0.913 35 H 0.029 0.971 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.132 0.868 39 H 0.112 0.888 40 H 0.109 0.891 41 H 0.135 0.865 42 H 0.070 0.930 43 H 0.044 0.956 44 H 0.076 0.924 45 H 0.109 0.891 46 H 0.050 0.950 47 H 0.104 0.896 48 H 0.109 0.891 49 H 0.087 0.913 50 H 0.089 0.911 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 8.787 -9.263 -11.341 17.077 hybrid contribution -0.809 0.968 1.467 1.934 sum 7.979 -8.296 -9.874 15.165 Atomic orbital electron populations 1.23515 0.75403 1.05637 1.02112 1.86524 1.24665 1.32780 1.83971 1.24382 0.92880 0.80962 0.70767 1.90654 1.68158 1.37802 1.46945 1.22028 0.84940 1.02044 1.06326 1.20511 0.83372 0.91436 1.00935 1.43791 1.00963 1.82681 1.00922 1.19127 1.03415 1.25725 0.90214 0.91001 1.25894 1.00027 0.95148 1.02796 1.70254 1.31596 1.22261 1.31339 0.85552 0.76678 0.78916 0.80978 1.22133 1.22429 1.17740 1.21603 0.93870 0.92644 0.90477 0.88933 1.23008 0.94349 0.97922 1.01699 1.22293 0.99997 0.77704 1.01335 1.48617 1.11829 1.08524 1.67178 1.21015 0.89684 0.89271 0.93938 1.21851 0.98734 0.98587 0.97848 1.21456 0.97491 0.96708 0.98737 1.21570 1.00675 0.98175 0.95529 1.21453 0.98312 0.97286 0.97212 1.21871 0.99036 0.97950 0.97956 1.22365 0.83785 0.91398 0.74034 1.90606 1.76829 1.25494 1.51848 0.92148 0.84484 0.92861 0.86016 0.87421 0.91314 0.97059 0.94594 0.90691 0.86780 0.88769 0.89106 0.86461 0.92984 0.95646 0.92364 0.89089 0.94990 0.89637 0.89123 0.91284 0.91087 0.95073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.80 16 2 O -0.36 -10.87 10.57 -51.46 -0.54 -11.41 16 3 C 0.47 17.31 7.96 71.24 0.57 17.87 16 4 O -0.55 -24.60 15.73 21.96 0.35 -24.25 16 5 C -0.11 -4.14 6.13 29.85 0.18 -3.95 16 6 C 0.16 7.96 4.48 86.38 0.39 8.35 16 7 N -0.56 -27.02 2.48 -678.09 -1.68 -28.70 16 8 C -0.25 -13.44 8.44 84.03 0.71 -12.73 16 9 H 0.07 3.65 6.62 -2.91 -0.02 3.63 16 10 C -0.04 -2.33 4.91 84.86 0.42 -1.92 16 11 N -0.91 -57.33 11.34 21.65 0.25 -57.08 16 12 Si 0.95 45.44 29.61 68.60 2.03 47.47 16 13 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 14 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 15 H -0.25 -11.02 7.11 99.48 0.71 -10.31 16 16 C 0.12 4.89 3.46 44.98 0.16 5.05 16 17 H 0.09 3.37 7.93 -2.39 -0.02 3.35 16 18 C -0.13 -3.57 6.76 31.72 0.21 -3.36 16 19 C 0.11 2.47 7.31 86.89 0.64 3.10 16 20 N -0.63 -20.40 2.83 -793.67 -2.25 -22.65 16 21 C 0.16 4.61 2.75 44.99 0.12 4.73 16 22 C -0.13 -4.35 5.21 30.59 0.16 -4.19 16 23 C -0.11 -2.57 5.92 30.59 0.18 -2.38 16 24 C -0.12 -2.84 5.92 30.59 0.18 -2.66 16 25 C -0.10 -2.19 5.92 30.59 0.18 -2.01 16 26 C -0.13 -3.65 5.21 30.60 0.16 -3.49 16 27 C 0.50 21.94 6.47 87.90 0.57 22.51 16 28 O -0.57 -32.13 15.11 -3.05 -0.05 -32.17 16 29 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 30 H 0.14 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.05 1.29 8.13 -2.39 -0.02 1.27 16 32 H 0.12 3.55 8.14 -2.39 -0.02 3.53 16 33 H 0.11 3.85 8.14 -2.38 -0.02 3.84 16 34 H 0.07 4.02 5.28 -2.38 -0.01 4.00 16 35 H 0.01 0.57 8.03 -2.39 -0.02 0.55 16 36 H 0.24 15.16 8.31 -92.71 -0.77 14.39 16 37 H 0.07 2.35 6.34 -2.39 -0.02 2.34 16 38 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.12 2.37 8.07 -2.39 -0.02 2.35 16 42 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.02 1.12 6.80 -2.38 -0.02 1.11 16 44 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.09 1.63 8.14 -2.38 -0.02 1.62 16 46 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 50 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.03 1.19 6.77 -2.38 -0.02 1.17 16 Total: -1.00 -82.97 400.78 5.03 -77.95 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.90 Total: 24.12 kcal Atomic # 6 Polarization: 20.71 SS G_CDS: 6.02 Total: 26.73 kcal Atomic # 7 Polarization: -104.75 SS G_CDS: -3.68 Total: -108.43 kcal Atomic # 8 Polarization: -67.59 SS G_CDS: -0.24 Total: -67.84 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -82.97 5.03 -77.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879471827.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.644 kcal (2) G-P(sol) polarization free energy of solvation -82.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds