Wall clock time and date at job start Tue Mar 31 2020 20:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.45197 * 109.47453 * 2 1 4 4 C 1.34227 * 117.00297 * 180.02562 * 3 2 1 5 5 O 1.20828 * 119.99784 * 359.97438 * 4 3 2 6 6 C 1.50693 * 120.00104 * 179.97438 * 4 3 2 7 7 H 1.09002 * 109.50451 * 299.91844 * 6 4 3 8 8 C 1.53115 * 109.50698 * 59.99508 * 6 4 3 9 9 C 1.53119 * 109.16546 * 177.63275 * 8 6 4 10 10 C 1.53032 * 109.27914 * 302.35013 * 9 8 6 11 11 N 1.46850 * 109.52618 * 59.17607 * 10 9 8 12 12 C 1.46894 * 111.00140 * 174.16250 * 11 10 9 13 13 C 1.50696 * 109.47553 * 66.04743 * 12 11 10 14 14 O 1.21284 * 119.99498 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99987 * 180.02562 * 13 12 11 16 16 C 1.46504 * 119.99626 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.47049 * 186.35118 * 16 15 13 18 18 C 1.50697 * 115.55952 * 39.96603 * 17 16 15 19 19 H 1.08004 * 120.00061 * 260.46729 * 18 17 16 20 20 C 1.37875 * 120.00503 * 80.47061 * 18 17 16 21 21 N 1.31520 * 119.99459 * 354.22439 * 20 18 17 22 22 Si 1.86799 * 120.00258 * 174.22622 * 20 18 17 23 23 H 1.48496 * 109.46871 * 60.00001 * 22 20 18 24 24 H 1.48504 * 109.46928 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46899 * 299.99822 * 22 20 18 26 26 C 1.52995 * 117.49840 * 185.65513 * 17 16 15 27 27 C 1.52997 * 117.49568 * 254.27805 * 17 16 15 28 28 C 1.46844 * 111.19498 * 298.25898 * 11 10 9 29 29 H 1.09006 * 109.47216 * 60.00315 * 1 2 3 30 30 H 1.09004 * 109.47582 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47329 * 300.00697 * 1 2 3 32 32 H 1.08998 * 109.47329 * 239.99302 * 2 1 3 33 33 H 1.09006 * 109.47216 * 119.99685 * 2 1 3 34 34 H 1.09003 * 109.51966 * 57.72887 * 8 6 4 35 35 H 1.08999 * 109.52517 * 297.54708 * 8 6 4 36 36 H 1.08996 * 109.50301 * 182.40532 * 9 8 6 37 37 H 1.09003 * 109.49923 * 62.28790 * 9 8 6 38 38 H 1.08997 * 109.46375 * 299.16006 * 10 9 8 39 39 H 1.09004 * 109.46522 * 179.18933 * 10 9 8 40 40 H 1.08999 * 109.47063 * 306.04456 * 12 11 10 41 41 H 1.09006 * 109.47076 * 186.05060 * 12 11 10 42 42 H 0.96998 * 120.00585 * 359.97438 * 15 13 12 43 43 H 1.09002 * 109.47368 * 66.34943 * 16 15 13 44 44 H 1.09006 * 109.46938 * 306.34671 * 16 15 13 45 45 H 0.97001 * 119.99745 * 185.03361 * 21 20 18 46 46 H 1.08999 * 117.50021 * 359.97438 * 26 17 16 47 47 H 1.09005 * 117.49771 * 214.97821 * 26 17 16 48 48 H 1.09001 * 117.49519 * 145.01957 * 27 17 16 49 49 H 1.09002 * 117.52114 * 359.97438 * 27 17 16 50 50 H 1.09005 * 109.46171 * 181.75557 * 28 11 10 51 51 H 1.09000 * 109.46758 * 301.72150 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9207 2.9373 -0.0012 7 1 3.5860 3.4692 -0.8917 8 6 3.4497 3.6860 1.2486 9 6 4.0864 5.0784 1.2703 10 6 5.6099 4.9379 1.2374 11 7 6.0101 4.2158 0.0230 12 6 7.4724 4.1830 -0.1122 13 6 8.0618 3.3604 1.0045 14 8 7.3351 2.8520 1.8318 15 7 9.3965 3.1906 1.0844 16 6 9.9693 2.3904 2.1697 17 6 11.4956 2.4862 2.1231 18 6 12.0520 3.8491 1.8008 19 1 12.3809 4.0746 0.7970 20 6 12.1413 4.8083 2.7872 21 7 11.6378 4.5742 3.9794 22 14 12.9774 6.4402 2.4302 23 1 12.2662 7.1289 1.3234 24 1 12.9413 7.2913 3.6466 25 1 14.3886 6.1977 2.0368 26 6 12.2884 1.6117 3.0965 27 6 12.2644 1.2688 1.6056 28 6 5.4491 2.8589 0.0028 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.7507 3.1339 2.1390 35 1 2.3641 3.7820 1.2283 36 1 3.7885 5.6005 2.1795 37 1 3.7542 5.6439 0.3997 38 1 5.9426 4.3842 2.1154 39 1 6.0660 5.9279 1.2382 40 1 7.8649 5.1986 -0.0615 41 1 7.7388 3.7380 -1.0709 42 1 9.9777 3.5975 0.4230 43 1 9.6668 1.3498 2.0526 44 1 9.6107 2.7675 3.1275 45 1 11.6352 5.2744 4.6507 46 1 11.7226 0.9684 3.7704 47 1 13.2124 2.0221 3.5038 48 1 13.1726 1.4537 1.0320 49 1 11.6831 0.3993 1.2987 50 1 5.7884 2.3389 -0.8931 51 1 5.7825 2.3149 0.8865 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907936472.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:33 Heat of formation + Delta-G solvation = -103.092076 kcal Electronic energy + Delta-G solvation = -30381.641821 eV Core-core repulsion = 26281.520633 eV Total energy + Delta-G solvation = -4100.121188 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.85072 -39.75298 -37.88934 -36.75663 -36.47102 -33.60830 -33.23368 -32.06322 -31.97259 -31.00314 -28.08040 -25.85208 -25.04702 -24.97112 -23.05992 -22.88475 -21.22296 -21.12732 -19.89452 -19.71509 -19.18486 -17.75090 -16.78618 -16.68969 -16.59497 -16.07631 -15.44405 -15.15478 -14.82251 -14.75912 -14.57733 -14.27205 -14.13866 -13.94352 -13.49750 -13.23541 -13.13423 -12.90255 -12.83727 -12.62378 -12.20822 -12.09562 -12.03491 -11.89003 -11.64791 -11.56900 -11.18677 -11.04954 -10.97129 -10.80579 -10.75397 -10.64595 -10.58523 -10.45031 -10.27479 -10.22401 -9.93883 -9.60449 -9.00215 -8.56805 -8.39149 -7.94827 -7.84008 -6.13561 -4.23319 2.14756 2.48549 3.21165 3.22378 3.28669 3.29809 3.97786 4.03600 4.29686 4.46828 4.63422 4.67284 4.72261 4.82384 4.99343 5.04267 5.12469 5.14629 5.24483 5.34787 5.42681 5.47451 5.48943 5.49924 5.55421 5.64883 5.67179 5.70892 5.88995 5.93569 6.00258 6.02433 6.10626 6.26706 6.28796 6.34159 6.42080 6.47492 6.54838 6.69235 6.89035 7.02130 7.06648 7.11387 7.28659 7.36682 7.47891 7.68891 7.74963 8.28952 8.38634 8.78435 8.96029 9.44131 10.94125 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017347 B = 0.002590 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1613.731608 B =10807.688683 C =11809.561994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.359 6.359 4 C 0.467 3.533 5 O -0.502 6.502 6 C -0.072 4.072 7 H 0.111 0.889 8 C -0.110 4.110 9 C -0.110 4.110 10 C 0.035 3.965 11 N -0.513 5.513 12 C 0.035 3.965 13 C 0.471 3.529 14 O -0.559 6.559 15 N -0.689 5.689 16 C 0.164 3.836 17 C 0.030 3.970 18 C -0.504 4.504 19 H 0.060 0.940 20 C 0.077 3.923 21 N -0.870 5.870 22 Si 0.890 3.110 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.157 4.157 27 C -0.210 4.210 28 C 0.047 3.953 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.102 0.898 42 H 0.404 0.596 43 H 0.032 0.968 44 H 0.070 0.930 45 H 0.262 0.738 46 H 0.064 0.936 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.066 0.934 50 H 0.073 0.927 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.630 -1.859 -8.656 20.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.276 6.276 4 C 0.309 3.691 5 O -0.389 6.389 6 C -0.091 4.091 7 H 0.129 0.871 8 C -0.148 4.148 9 C -0.147 4.147 10 C -0.093 4.093 11 N -0.236 5.236 12 C -0.097 4.097 13 C 0.255 3.745 14 O -0.440 6.440 15 N -0.338 5.338 16 C 0.040 3.960 17 C 0.029 3.971 18 C -0.542 4.542 19 H 0.079 0.921 20 C -0.128 4.128 21 N -0.505 5.505 22 Si 0.717 3.283 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.195 4.195 27 C -0.247 4.247 28 C -0.080 4.080 29 H 0.085 0.915 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.124 0.876 41 H 0.120 0.880 42 H 0.239 0.761 43 H 0.050 0.950 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.100 0.900 48 H 0.096 0.904 49 H 0.084 0.916 50 H 0.092 0.908 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.085 -2.223 -8.248 20.910 hybrid contribution 1.233 0.443 0.321 1.349 sum -17.853 -1.780 -7.927 19.614 Atomic orbital electron populations 1.21798 0.92667 1.02898 1.03487 1.23011 0.95292 0.80488 1.02639 1.86499 1.24773 1.32150 1.84196 1.23789 0.80378 0.92760 0.72130 1.90692 1.60327 1.43176 1.44695 1.21033 0.96846 0.89071 1.02160 0.87110 1.21551 1.00613 0.96491 0.96121 1.21530 0.94983 0.95934 1.02302 1.22337 0.95376 0.98719 0.92848 1.62330 1.07245 1.15987 1.37999 1.22248 0.88033 1.01516 0.97903 1.21778 0.83268 0.82028 0.87418 1.90541 1.59415 1.51217 1.42866 1.46058 1.06066 1.51471 1.30198 1.20837 0.93931 0.91409 0.89799 1.19042 0.88494 0.90601 0.98923 1.20262 1.42916 0.95354 0.95642 0.92148 1.24988 0.94717 0.98338 0.94769 1.69969 1.43391 1.33099 1.04080 0.86708 0.80385 0.83491 0.77698 1.20142 1.21310 1.20164 1.22535 1.02868 1.03583 0.90515 1.23062 1.03299 1.00406 0.97975 1.22255 0.90523 0.90577 1.04671 0.91509 0.90318 0.91464 0.91307 0.91243 0.91336 0.90753 0.91029 0.91130 0.91472 0.90922 0.87637 0.88004 0.76082 0.94952 0.91180 0.92775 0.91723 0.89999 0.90388 0.91588 0.90832 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 10.29 37.15 0.38 -0.57 16 2 C 0.06 0.55 6.19 37.15 0.23 0.78 16 3 O -0.36 -4.12 10.15 -39.25 -0.40 -4.52 16 4 C 0.47 6.28 7.26 36.00 0.26 6.54 16 5 O -0.50 -8.36 15.74 -18.75 -0.30 -8.65 16 6 C -0.07 -0.87 2.79 -91.69 -0.26 -1.12 16 7 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 8 C -0.11 -1.23 5.21 -26.61 -0.14 -1.36 16 9 C -0.11 -1.18 6.09 -26.65 -0.16 -1.34 16 10 C 0.03 0.48 5.09 -3.83 -0.02 0.46 16 11 N -0.51 -7.05 4.86 -236.12 -1.15 -8.19 16 12 C 0.03 0.49 5.86 -4.98 -0.03 0.46 16 13 C 0.47 8.70 7.25 -10.99 -0.08 8.62 16 14 O -0.56 -11.97 11.61 5.55 0.06 -11.90 16 15 N -0.69 -13.56 5.27 -60.29 -0.32 -13.88 16 16 C 0.16 3.71 5.76 -4.04 -0.02 3.69 16 17 C 0.03 0.70 1.62 -155.66 -0.25 0.45 16 18 C -0.50 -12.51 7.51 -34.44 -0.26 -12.77 16 19 H 0.06 1.46 7.82 -52.48 -0.41 1.05 16 20 C 0.08 1.98 5.42 -17.82 -0.10 1.88 16 21 N -0.87 -23.71 13.11 55.43 0.73 -22.98 16 22 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 23 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 C -0.16 -3.57 9.71 -26.73 -0.26 -3.83 16 27 C -0.21 -4.39 9.88 -26.73 -0.26 -4.65 16 28 C 0.05 0.69 3.55 -3.83 -0.01 0.68 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 33 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.14 6.00 -51.93 -0.31 0.83 16 39 H 0.07 0.94 8.06 -51.93 -0.42 0.52 16 40 H 0.11 1.35 8.06 -51.93 -0.42 0.93 16 41 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.40 7.43 7.59 -40.82 -0.31 7.12 16 43 H 0.03 0.72 7.95 -51.93 -0.41 0.31 16 44 H 0.07 1.82 8.12 -51.93 -0.42 1.40 16 45 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 46 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.08 1.97 8.14 -51.93 -0.42 1.54 16 48 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 49 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 50 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 51 H 0.09 1.69 5.30 -51.93 -0.28 1.41 16 LS Contribution 408.47 15.07 6.16 6.16 Total: -1.00 -30.10 408.47 -10.09 -40.19 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -8.87 Total: 10.95 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -0.98 Total: -2.09 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: -0.74 Total: -45.06 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.63 Total: -25.08 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.10 -10.09 -40.19 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907936472.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.902 kcal (2) G-P(sol) polarization free energy of solvation -30.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds