Wall clock time and date at job start Tue Mar 31 2020 20:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 120.00336 * 2 1 4 4 N 1.46495 * 109.47468 * 124.99884 * 3 2 1 5 5 C 1.46507 * 119.99860 * 270.00659 * 4 3 2 6 6 C 1.50700 * 109.46371 * 269.99377 * 5 4 3 7 7 H 1.08001 * 120.00706 * 0.02562 * 6 5 4 8 8 C 1.37888 * 119.99731 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00201 * 179.97438 * 8 6 5 10 10 Si 1.86802 * 119.99708 * 0.02562 * 8 6 5 11 11 H 1.48493 * 109.47113 * 89.99823 * 10 8 6 12 12 H 1.48496 * 109.47131 * 209.99948 * 10 8 6 13 13 H 1.48497 * 109.47199 * 330.00010 * 10 8 6 14 14 C 1.34776 * 120.00171 * 90.00124 * 4 3 2 15 15 O 1.21284 * 120.00209 * 180.02562 * 14 4 3 16 16 C 1.50701 * 119.99593 * 359.97438 * 14 4 3 17 17 N 1.46906 * 109.46898 * 179.97438 * 16 14 4 18 18 C 1.46848 * 111.00135 * 293.95942 * 17 16 14 19 19 C 1.53035 * 109.52142 * 185.83611 * 18 17 16 20 20 C 1.53114 * 109.28189 * 300.82150 * 19 18 17 21 21 C 1.53126 * 109.16071 * 57.65474 * 20 19 18 22 22 H 1.08997 * 109.50129 * 62.28942 * 21 20 19 23 23 C 1.50704 * 109.50215 * 182.40633 * 21 20 19 24 24 O 1.20825 * 119.99904 * 119.99709 * 23 21 20 25 25 O 1.34224 * 120.00195 * 299.99876 * 23 21 20 26 26 C 1.45199 * 117.00318 * 179.97438 * 25 23 21 27 27 C 1.52993 * 109.47188 * 179.97438 * 26 25 23 28 28 C 1.46847 * 110.99812 * 58.16867 * 17 16 14 29 29 H 1.08000 * 120.00395 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99890 * 0.02562 * 1 2 3 31 31 H 1.08004 * 119.99890 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.46951 * 4.99710 * 3 2 1 33 33 H 1.09000 * 109.47004 * 245.00305 * 3 2 1 34 34 H 1.08990 * 109.47314 * 29.99680 * 5 4 3 35 35 H 1.08995 * 109.46796 * 149.99920 * 5 4 3 36 36 H 0.96990 * 120.00170 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.47272 * 60.00438 * 16 14 4 38 38 H 1.08997 * 109.47692 * 299.99896 * 16 14 4 39 39 H 1.09000 * 109.46321 * 65.82514 * 18 17 16 40 40 H 1.09002 * 109.46191 * 305.85104 * 18 17 16 41 41 H 1.08994 * 109.50219 * 180.87675 * 19 18 17 42 42 H 1.09010 * 109.53489 * 60.77934 * 19 18 17 43 43 H 1.09001 * 109.52084 * 297.74913 * 20 19 18 44 44 H 1.09000 * 109.57760 * 177.58683 * 20 19 18 45 45 H 1.08998 * 109.47076 * 300.00226 * 26 25 23 46 46 H 1.09005 * 109.46972 * 60.00001 * 26 25 23 47 47 H 1.08998 * 109.47459 * 300.00191 * 27 26 25 48 48 H 1.09005 * 109.47526 * 60.00188 * 27 26 25 49 49 H 1.09003 * 109.47247 * 180.02562 * 27 26 25 50 50 H 1.08999 * 109.46634 * 54.14179 * 28 17 16 51 51 H 1.09006 * 109.46422 * 294.18075 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5588 1.8649 2.4249 6 6 2.8443 3.3436 2.4803 7 1 3.3034 3.8371 1.6364 8 6 2.5194 4.0666 3.6086 9 7 2.7690 5.3569 3.6573 10 14 1.7260 3.2130 5.0685 11 1 2.7827 2.7227 5.9894 12 1 0.8497 4.1728 5.7868 13 1 0.9149 2.0649 4.5898 14 6 4.2497 0.8662 0.9824 15 8 5.0197 0.8879 1.9192 16 6 4.6969 0.3173 -0.3480 17 7 6.0954 -0.1219 -0.2514 18 6 6.9911 1.0196 -0.0254 19 6 8.4455 0.5461 -0.0753 20 6 8.6670 -0.5211 1.0001 21 6 7.6889 -1.6766 0.7704 22 1 7.8884 -2.1351 -0.1981 23 6 7.8599 -2.7044 1.8593 24 8 6.9303 -2.9816 2.5797 25 8 9.0447 -3.3119 2.0288 26 6 9.1369 -4.2906 3.0974 27 6 10.5515 -4.8721 3.1358 28 6 6.2565 -1.1387 0.7959 29 1 -0.5401 -0.9353 -0.0004 30 1 -0.5400 0.9354 -0.0004 31 1 1.8500 -0.9354 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4025 -0.9314 34 1 1.4888 1.6966 2.5459 35 1 3.0989 1.3603 3.2259 36 1 2.5401 5.8656 4.4507 37 1 4.6120 1.0936 -1.1084 38 1 4.0678 -0.5297 -0.6216 39 1 6.7845 1.4555 0.9520 40 1 6.8264 1.7692 -0.7994 41 1 9.1096 1.3907 0.1079 42 1 8.6575 0.1227 -1.0572 43 1 8.4935 -0.0872 1.9849 44 1 9.6900 -0.8926 0.9408 45 1 8.9151 -3.8100 4.0503 46 1 8.4197 -5.0919 2.9191 47 1 10.7728 -5.3527 2.1829 48 1 11.2690 -4.0710 3.3140 49 1 10.6206 -5.6071 3.9378 50 1 5.5582 -1.9566 0.6185 51 1 6.0532 -0.6927 1.7695 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908343298.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:46:40 Heat of formation + Delta-G solvation = -93.148276 kcal Electronic energy + Delta-G solvation = -30796.653946 eV Core-core repulsion = 26696.963954 eV Total energy + Delta-G solvation = -4099.689992 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.82870 -39.85371 -37.96159 -36.62642 -35.75315 -33.70936 -33.09287 -32.15787 -31.93721 -30.96519 -28.96627 -26.95048 -25.47749 -24.93711 -23.44196 -22.95870 -21.95405 -21.03507 -20.06453 -19.72372 -18.50165 -17.68772 -16.93469 -16.70151 -16.67233 -16.49369 -15.79500 -15.16788 -15.13062 -14.69224 -14.53841 -14.33211 -14.03968 -13.89679 -13.72567 -13.40051 -13.15587 -12.97423 -12.85872 -12.64557 -12.39838 -12.18796 -12.04139 -11.87138 -11.78707 -11.68813 -11.55900 -11.32098 -11.11029 -10.96507 -10.74398 -10.72260 -10.62592 -10.53927 -10.40418 -10.19108 -10.12559 -9.76944 -9.54748 -9.28152 -8.60406 -7.86919 -7.73110 -6.10727 -4.09328 2.18274 2.34750 2.51870 3.23565 3.28430 3.34499 3.37241 3.87416 4.03359 4.38504 4.50100 4.66565 4.70400 4.75429 4.84041 4.96217 5.02348 5.08115 5.15871 5.18897 5.24198 5.31540 5.35189 5.45229 5.48229 5.50426 5.57417 5.59386 5.64034 5.68664 5.72247 5.92938 5.94182 5.96540 6.05484 6.10443 6.15392 6.31599 6.39249 6.48081 6.67139 6.70337 6.83008 6.92939 7.04489 7.13197 7.32929 7.59634 7.72342 8.19635 8.44568 8.87923 8.93827 9.49985 11.02537 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.010911 B = 0.003151 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.692612 B = 8883.444370 C = 9457.922884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.170 4.170 3 C 0.135 3.865 4 N -0.586 5.586 5 C 0.216 3.784 6 C -0.527 4.527 7 H 0.074 0.926 8 C 0.073 3.927 9 N -0.897 5.897 10 Si 0.874 3.126 11 H -0.274 1.274 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.477 3.523 15 O -0.535 6.535 16 C 0.035 3.965 17 N -0.514 5.514 18 C 0.034 3.966 19 C -0.109 4.109 20 C -0.111 4.111 21 C -0.071 4.071 22 H 0.111 0.889 23 C 0.467 3.533 24 O -0.502 6.502 25 O -0.359 6.359 26 C 0.059 3.941 27 C -0.151 4.151 28 C 0.047 3.953 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.029 0.971 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.078 0.922 50 H 0.072 0.928 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.601 -17.122 -9.926 21.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.189 4.189 3 C 0.011 3.989 4 N -0.317 5.317 5 C 0.095 3.905 6 C -0.565 4.565 7 H 0.092 0.908 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.701 3.299 11 H -0.200 1.200 12 H -0.210 1.210 13 H -0.191 1.191 14 C 0.263 3.737 15 O -0.414 6.414 16 C -0.096 4.096 17 N -0.236 5.236 18 C -0.094 4.094 19 C -0.147 4.147 20 C -0.149 4.149 21 C -0.090 4.090 22 H 0.129 0.871 23 C 0.309 3.691 24 O -0.389 6.389 25 O -0.276 6.276 26 C -0.014 4.014 27 C -0.208 4.208 28 C -0.081 4.081 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.121 0.879 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.097 0.903 50 H 0.091 0.909 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.864 -17.251 -9.502 22.027 hybrid contribution -0.912 -0.076 1.728 1.955 sum 8.953 -17.327 -7.774 20.995 Atomic orbital electron populations 1.23844 0.95862 1.01844 1.00445 1.23441 0.96434 0.99035 1.00012 1.20623 0.93183 0.95398 0.89658 1.48061 1.10925 1.59784 1.12913 1.19645 0.94868 0.95137 0.80841 1.21297 1.41152 0.91079 1.03002 0.90803 1.24841 0.95261 0.94705 0.98105 1.69888 1.47808 1.06600 1.29291 0.86874 0.79906 0.79687 0.83402 1.19959 1.21047 1.19053 1.21689 0.82313 0.78671 0.91036 1.90571 1.51990 1.56381 1.42433 1.22315 0.90319 1.01475 0.95515 1.62374 1.03808 1.12084 1.45357 1.22352 0.91839 0.92426 1.02762 1.21520 0.96216 0.98158 0.98764 1.21559 0.98088 0.94660 1.00544 1.21026 0.98571 0.93318 0.96106 0.87133 1.23794 0.80137 0.80579 0.84569 1.90693 1.41195 1.61962 1.45029 1.86497 1.36142 1.52345 1.52618 1.23010 0.98812 0.90379 0.89238 1.21796 0.94767 1.01259 1.03015 1.22255 0.93133 0.94988 0.97710 0.88721 0.88214 0.87686 0.89211 0.90315 0.95344 0.94702 0.92565 0.87920 0.88249 0.91202 0.90939 0.90956 0.91193 0.91230 0.90741 0.91218 0.91346 0.91531 0.91436 0.90341 0.90944 0.88991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 14.32 29.02 0.42 -1.79 16 2 C -0.17 -2.26 9.74 -36.02 -0.35 -2.61 16 3 C 0.14 2.07 5.65 -5.20 -0.03 2.04 16 4 N -0.59 -11.75 2.44 -176.44 -0.43 -12.18 16 5 C 0.22 5.29 4.23 -5.19 -0.02 5.27 16 6 C -0.53 -15.03 9.94 -34.44 -0.34 -15.37 16 7 H 0.07 2.30 8.06 -52.49 -0.42 1.87 16 8 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 10 Si 0.87 21.90 27.47 -169.99 -4.67 17.23 16 11 H -0.27 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 H -0.27 -6.33 6.54 56.52 0.37 -5.96 16 14 C 0.48 9.29 7.09 -10.99 -0.08 9.21 16 15 O -0.54 -12.48 11.20 5.55 0.06 -12.42 16 16 C 0.04 0.50 4.41 -4.97 -0.02 0.48 16 17 N -0.51 -7.26 4.86 -236.11 -1.15 -8.40 16 18 C 0.03 0.48 5.09 -3.83 -0.02 0.47 16 19 C -0.11 -1.23 6.09 -26.65 -0.16 -1.40 16 20 C -0.11 -1.31 5.21 -26.61 -0.14 -1.45 16 21 C -0.07 -0.90 2.79 -91.69 -0.26 -1.15 16 22 H 0.11 1.19 8.14 -51.93 -0.42 0.76 16 23 C 0.47 6.56 7.26 36.01 0.26 6.82 16 24 O -0.50 -8.69 15.73 -18.75 -0.29 -8.99 16 25 O -0.36 -4.31 10.15 -39.24 -0.40 -4.71 16 26 C 0.06 0.59 6.19 37.15 0.23 0.82 16 27 C -0.15 -1.02 10.29 37.15 0.38 -0.63 16 28 C 0.05 0.71 3.55 -3.84 -0.01 0.70 16 29 H 0.09 0.99 8.06 -52.49 -0.42 0.57 16 30 H 0.10 1.19 7.84 -52.48 -0.41 0.78 16 31 H 0.11 1.31 7.83 -52.48 -0.41 0.90 16 32 H 0.09 1.45 7.72 -51.93 -0.40 1.05 16 33 H 0.08 0.99 6.44 -51.93 -0.33 0.65 16 34 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 35 H 0.03 0.93 6.85 -51.93 -0.36 0.57 16 36 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 37 H 0.10 1.29 7.32 -51.93 -0.38 0.91 16 38 H 0.10 1.22 7.77 -51.93 -0.40 0.81 16 39 H 0.07 1.28 6.00 -51.93 -0.31 0.97 16 40 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 46 H 0.07 0.66 8.13 -51.93 -0.42 0.23 16 47 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 51 H 0.09 1.79 5.30 -51.93 -0.28 1.51 16 LS Contribution 406.08 15.07 6.12 6.12 Total: -1.00 -34.75 406.08 -8.96 -43.71 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -8.73 Total: 3.09 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -0.24 Total: 3.43 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.80 Total: -47.47 kcal Atomic # 8 Polarization: -25.48 SS G_CDS: -0.63 Total: -26.11 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.75 -8.96 -43.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908343298.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.440 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds