Wall clock time and date at job start Tue Mar 31 2020 22:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34227 * 117.00057 * 2 1 4 4 O 1.20828 * 120.00279 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00348 * 180.02562 * 3 2 1 6 6 H 1.08999 * 109.47190 * 59.99802 * 5 3 2 7 7 C 1.53002 * 109.47138 * 300.00000 * 5 3 2 8 8 C 1.52995 * 109.47335 * 179.97438 * 7 5 3 9 9 C 1.53005 * 109.46824 * 59.99999 * 8 7 5 10 10 C 1.52997 * 109.47228 * 299.99591 * 9 8 7 11 11 C 1.53002 * 109.47524 * 180.02562 * 5 3 2 12 12 H 1.09001 * 109.46828 * 299.99795 * 11 5 3 13 13 C 1.52996 * 109.47337 * 59.99879 * 11 5 3 14 14 N 1.46893 * 109.47402 * 181.99309 * 13 11 5 15 15 C 1.46899 * 111.00189 * 75.68134 * 14 13 11 16 16 C 1.53240 * 109.34534 * 187.25368 * 15 14 13 17 17 N 1.47078 * 108.51814 * 306.17249 * 16 15 14 18 18 C 1.34776 * 120.88298 * 231.17992 * 17 16 15 19 19 O 1.21689 * 119.99619 * 355.17106 * 18 17 16 20 20 C 1.46369 * 120.00392 * 175.16724 * 18 17 16 21 21 H 1.07998 * 119.99684 * 8.86775 * 20 18 17 22 22 C 1.40055 * 120.00107 * 188.85969 * 20 18 17 23 23 N 1.30666 * 119.99894 * 192.12262 * 22 20 18 24 24 Si 1.86796 * 119.99738 * 12.13001 * 22 20 18 25 25 H 1.48493 * 109.47145 * 269.99301 * 24 22 20 26 26 H 1.48510 * 109.47046 * 149.99588 * 24 22 20 27 27 H 1.48501 * 109.47390 * 29.99862 * 24 22 20 28 28 C 1.47080 * 118.23857 * 51.45560 * 17 16 15 29 29 C 1.46898 * 111.00232 * 199.98405 * 14 13 11 30 30 H 1.09001 * 109.47093 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47415 * 300.00415 * 1 2 3 32 32 H 1.09002 * 109.47515 * 59.99894 * 1 2 3 33 33 H 1.08997 * 109.46614 * 59.99731 * 7 5 3 34 34 H 1.08999 * 109.46918 * 299.99969 * 7 5 3 35 35 H 1.08999 * 109.47058 * 300.00472 * 8 7 5 36 36 H 1.08997 * 109.47552 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.46751 * 180.02562 * 9 8 7 38 38 H 1.08999 * 109.46917 * 60.00386 * 9 8 7 39 39 H 1.08999 * 109.47821 * 300.00242 * 10 9 8 40 40 H 1.09000 * 109.47138 * 179.97438 * 10 9 8 41 41 H 1.08997 * 109.46981 * 61.99079 * 13 11 5 42 42 H 1.09002 * 109.47151 * 301.99521 * 13 11 5 43 43 H 1.09008 * 109.49482 * 67.29155 * 15 14 13 44 44 H 1.08999 * 109.49422 * 307.21629 * 15 14 13 45 45 H 1.09000 * 109.62912 * 186.45880 * 16 15 14 46 46 H 1.09001 * 109.62155 * 65.87820 * 16 15 14 47 47 H 0.96994 * 120.00411 * 354.94162 * 23 22 20 48 48 H 1.08998 * 109.62887 * 68.25291 * 28 17 16 49 49 H 1.08995 * 109.62721 * 188.82782 * 28 17 16 50 50 H 1.09005 * 109.49346 * 292.70436 * 29 14 13 51 51 H 1.09002 * 109.49391 * 52.78596 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9557 0.7810 -0.8908 7 6 4.1138 0.5811 1.2483 8 6 5.6417 0.6607 1.2474 9 6 6.0760 2.1278 1.2473 10 6 5.5285 2.8216 -0.0017 11 6 4.0001 2.7421 0.0002 12 1 3.6100 3.2368 -0.8893 13 6 3.4536 3.4349 1.2500 14 7 3.8297 4.8547 1.2270 15 6 3.0009 5.6035 0.2729 16 6 3.5398 7.0323 0.1446 17 7 3.6263 7.6215 1.4894 18 6 3.0795 8.8245 1.7541 19 8 2.5821 9.4776 0.8558 20 6 3.0838 9.3455 3.1219 21 1 3.6472 8.8383 3.8911 22 6 2.3575 10.5019 3.4331 23 7 2.5438 11.1018 4.5789 24 14 1.1224 11.1864 2.2103 25 1 1.8004 12.1542 1.3111 26 1 0.0291 11.8740 2.9434 27 1 0.5556 10.0752 1.4046 28 6 4.3308 6.8657 2.5362 29 6 3.7556 5.4409 2.5719 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 3.8048 -0.4641 1.2482 34 1 3.7244 1.0750 2.1385 35 1 6.0308 0.1665 0.3572 36 1 6.0319 0.1660 2.1369 37 1 7.1645 2.1845 1.2462 38 1 5.6869 2.6219 2.1375 39 1 5.9175 2.3274 -0.8919 40 1 5.8375 3.8669 -0.0015 41 1 3.8714 2.9628 2.1392 42 1 2.3673 3.3471 1.2685 43 1 1.9716 5.6337 0.6307 44 1 3.0338 5.1136 -0.7002 45 1 2.8636 7.6246 -0.4720 46 1 4.5302 7.0105 -0.3101 47 1 3.1297 10.7070 5.2435 48 1 5.3957 6.8284 2.3070 49 1 4.1779 7.3480 3.5016 50 1 2.7159 5.4735 2.8977 51 1 4.3359 4.8331 3.2661 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930630512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:01:28 Heat of formation + Delta-G solvation = -155.501122 kcal Electronic energy + Delta-G solvation = -31380.379968 eV Core-core repulsion = 27277.986153 eV Total energy + Delta-G solvation = -4102.393815 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.06663 -40.72686 -39.72853 -38.24544 -37.47754 -35.24172 -35.11769 -32.45312 -32.23132 -31.95332 -29.22969 -28.61870 -27.82883 -25.50827 -24.67748 -24.37571 -23.06247 -22.42524 -21.78962 -20.79949 -19.48924 -19.30148 -18.57830 -17.82401 -17.77940 -17.42199 -16.81634 -16.52987 -16.16365 -16.05524 -15.77152 -15.57407 -15.36823 -15.01144 -14.88987 -14.61511 -14.51086 -14.23893 -14.19406 -13.97046 -13.69158 -13.38374 -13.31615 -12.99303 -12.90839 -12.75925 -12.61753 -12.33251 -12.25126 -12.21324 -12.08322 -12.03773 -11.89954 -11.76911 -11.69004 -11.24919 -11.12448 -11.04429 -10.94593 -10.80397 -10.05817 -9.52397 -9.23587 -9.13578 -7.11084 1.14467 1.40384 1.49231 1.74871 1.91426 2.13733 2.33709 2.58383 2.88952 3.27926 3.58306 3.64140 3.78080 3.93606 4.03696 4.07031 4.18857 4.24319 4.27060 4.28312 4.29925 4.33459 4.39404 4.40763 4.47583 4.53101 4.58129 4.63199 4.67793 4.72799 4.78135 4.82536 4.87659 4.89221 4.98766 5.10196 5.12987 5.19875 5.26579 5.35628 5.36213 5.37207 5.51139 5.55662 5.61822 5.66760 5.83126 6.01367 6.03961 6.16466 6.63979 6.72013 7.03061 7.96367 8.10520 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016340 B = 0.002948 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.212649 B = 9496.429515 C =10349.803044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.360 6.360 3 C 0.458 3.542 4 O -0.534 6.534 5 C -0.068 4.068 6 H 0.134 0.866 7 C -0.108 4.108 8 C -0.110 4.110 9 C -0.121 4.121 10 C -0.098 4.098 11 C -0.060 4.060 12 H 0.062 0.938 13 C 0.049 3.951 14 N -0.519 5.519 15 C 0.062 3.938 16 C 0.124 3.876 17 N -0.637 5.637 18 C 0.547 3.453 19 O -0.646 6.646 20 C -0.614 4.614 21 H 0.077 0.923 22 C 0.032 3.968 23 N -0.847 5.847 24 Si 1.150 2.850 25 H -0.291 1.291 26 H -0.301 1.301 27 H -0.295 1.295 28 C 0.126 3.874 29 C 0.052 3.948 30 H 0.133 0.867 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.034 0.966 43 H 0.005 0.995 44 H 0.096 0.904 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.279 0.721 48 H 0.073 0.927 49 H 0.077 0.923 50 H 0.012 0.988 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.566 -30.129 -7.200 31.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.276 6.276 3 C 0.302 3.698 4 O -0.423 6.423 5 C -0.087 4.087 6 H 0.152 0.848 7 C -0.146 4.146 8 C -0.147 4.147 9 C -0.158 4.158 10 C -0.135 4.135 11 C -0.079 4.079 12 H 0.081 0.919 13 C -0.078 4.078 14 N -0.244 5.244 15 C -0.067 4.067 16 C 0.001 3.999 17 N -0.370 5.370 18 C 0.355 3.645 19 O -0.540 6.540 20 C -0.651 4.651 21 H 0.095 0.905 22 C -0.183 4.183 23 N -0.475 5.475 24 Si 0.981 3.019 25 H -0.219 1.219 26 H -0.231 1.231 27 H -0.223 1.223 28 C 0.003 3.997 29 C -0.076 4.076 30 H 0.151 0.849 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.052 0.948 43 H 0.024 0.976 44 H 0.114 0.886 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.090 0.910 48 H 0.091 0.909 49 H 0.096 0.904 50 H 0.030 0.970 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 4.619 -28.296 -7.979 29.760 hybrid contribution -0.283 -0.753 0.849 1.169 sum 4.336 -29.049 -7.131 30.224 Atomic orbital electron populations 1.23479 0.75429 1.05530 1.02050 1.86496 1.24387 1.33014 1.83701 1.24478 0.93126 0.80997 0.71156 1.90674 1.68179 1.37262 1.46219 1.21248 0.84932 0.98644 1.03914 0.84849 1.21563 0.97320 1.00931 0.94743 1.21510 0.93305 0.96515 1.03405 1.21568 1.00722 0.95564 0.97975 1.21387 0.91881 1.01549 0.98679 1.20916 0.97504 0.91826 0.97694 0.91933 1.22513 0.98640 0.87247 0.99421 1.61951 1.53363 1.02392 1.06659 1.22293 0.93212 0.93518 0.97675 1.21442 1.01053 0.92543 0.84875 1.47808 1.58771 1.19318 1.11148 1.18415 0.76622 0.79946 0.89514 1.90180 1.54648 1.59952 1.49252 1.22263 1.34209 1.13898 0.94713 0.90470 1.27687 0.97832 0.92842 0.99900 1.70632 1.33493 1.36328 1.07061 0.82206 0.73574 0.74953 0.71210 1.21855 1.23092 1.22290 1.21773 0.95833 0.90367 0.91702 1.22513 0.98732 0.95408 0.90994 0.84928 0.92738 0.92382 0.89515 0.92365 0.90281 0.90576 0.91225 0.92624 0.90839 0.91575 0.89683 0.94823 0.97634 0.88608 0.91893 0.90985 0.91046 0.90931 0.90431 0.97009 0.87453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.58 16 2 O -0.36 -6.19 10.47 -51.39 -0.54 -6.72 16 3 C 0.46 9.28 6.95 71.24 0.50 9.77 16 4 O -0.53 -14.93 13.41 21.96 0.29 -14.64 16 5 C -0.07 -0.99 2.41 -11.54 -0.03 -1.02 16 6 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 7 C -0.11 -1.23 4.86 30.59 0.15 -1.09 16 8 C -0.11 -1.00 5.92 30.59 0.18 -0.82 16 9 C -0.12 -1.53 5.65 30.59 0.17 -1.36 16 10 C -0.10 -1.48 5.32 30.61 0.16 -1.32 16 11 C -0.06 -1.12 1.87 -10.78 -0.02 -1.14 16 12 H 0.06 1.36 6.72 -2.39 -0.02 1.35 16 13 C 0.05 1.16 3.43 86.30 0.30 1.45 16 14 N -0.52 -14.64 3.88 -894.33 -3.47 -18.11 16 15 C 0.06 2.06 5.45 86.38 0.47 2.53 16 16 C 0.12 4.84 6.58 86.35 0.57 5.41 16 17 N -0.64 -29.03 3.00 -822.15 -2.47 -31.50 16 18 C 0.55 30.71 7.37 86.36 0.64 31.34 16 19 O -0.65 -39.27 11.66 -4.31 -0.05 -39.32 16 20 C -0.61 -35.65 9.24 24.83 0.23 -35.42 16 21 H 0.08 4.35 5.93 -2.91 -0.02 4.33 16 22 C 0.03 1.91 5.52 85.31 0.47 2.38 16 23 N -0.85 -49.63 13.64 21.84 0.30 -49.33 16 24 Si 1.15 62.08 26.41 68.60 1.81 63.90 16 25 H -0.29 -15.76 7.11 99.48 0.71 -15.05 16 26 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 27 H -0.30 -16.74 6.42 99.48 0.64 -16.11 16 28 C 0.13 4.69 6.55 86.50 0.57 5.26 16 29 C 0.05 1.61 5.60 86.54 0.49 2.10 16 30 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 32 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 33 H 0.09 0.81 8.11 -2.39 -0.02 0.79 16 34 H 0.06 0.81 6.47 -2.39 -0.02 0.80 16 35 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.06 0.85 6.39 -2.39 -0.02 0.84 16 39 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 1.28 7.66 -2.39 -0.02 1.27 16 41 H 0.09 1.78 4.44 -2.39 -0.01 1.76 16 42 H 0.03 1.00 5.34 -2.39 -0.01 0.99 16 43 H 0.01 0.21 8.14 -2.38 -0.02 0.19 16 44 H 0.10 2.79 6.66 -2.39 -0.02 2.78 16 45 H 0.06 2.74 7.09 -2.39 -0.02 2.72 16 46 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 47 H 0.28 15.70 8.72 -92.71 -0.81 14.89 16 48 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 49 H 0.08 3.15 5.38 -2.39 -0.01 3.14 16 50 H 0.01 0.42 8.14 -2.38 -0.02 0.40 16 51 H 0.11 2.60 7.90 -2.39 -0.02 2.58 16 Total: -1.00 -74.00 380.88 2.73 -71.27 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: 0.82 Total: 4.78 kcal Atomic # 6 Polarization: 13.65 SS G_CDS: 6.03 Total: 19.68 kcal Atomic # 7 Polarization: -93.31 SS G_CDS: -5.64 Total: -98.95 kcal Atomic # 8 Polarization: -60.39 SS G_CDS: -0.29 Total: -60.68 kcal Atomic # 14 Polarization: 62.08 SS G_CDS: 1.81 Total: 63.90 kcal Total: -74.00 2.73 -71.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930630512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.227 kcal (2) G-P(sol) polarization free energy of solvation -74.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds