Wall clock time and date at job start Tue Mar 31 2020 20:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45199 * 109.47000 * 2 1 4 4 C 1.34228 * 116.99902 * 180.02562 * 3 2 1 5 5 O 1.20834 * 120.00154 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.00146 * 180.02562 * 4 3 2 7 7 H 1.08999 * 115.59694 * 88.16826 * 6 4 3 8 8 C 1.52363 * 117.51813 * 302.33721 * 6 4 3 9 9 H 1.09000 * 115.61128 * 145.27755 * 8 6 4 10 10 C 1.52380 * 119.51313 * 1.23891 * 8 6 4 11 11 C 1.52980 * 109.97551 * 310.38743 * 10 8 6 12 12 N 1.47172 * 108.60381 * 305.51834 * 11 10 8 13 13 C 1.46894 * 111.00030 * 199.58806 * 12 11 10 14 14 H 1.08995 * 109.47005 * 186.04435 * 13 12 11 15 15 C 1.53003 * 109.47177 * 306.04726 * 13 12 11 16 16 C 1.50698 * 109.47193 * 66.04581 * 13 12 11 17 17 O 1.21282 * 119.99770 * 342.05984 * 16 13 12 18 18 N 1.34774 * 120.00386 * 162.06119 * 16 13 12 19 19 C 1.46500 * 120.00255 * 183.61207 * 18 16 13 20 20 C 1.46499 * 119.99652 * 3.61549 * 18 16 13 21 21 C 1.50698 * 109.47574 * 95.61424 * 20 18 16 22 22 H 1.07998 * 119.99620 * 359.97438 * 21 20 18 23 23 C 1.37871 * 120.00306 * 180.02562 * 21 20 18 24 24 N 1.31519 * 120.00104 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00053 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47220 * 359.97438 * 25 23 21 27 27 H 1.48500 * 109.47533 * 119.99374 * 25 23 21 28 28 H 1.48497 * 109.47151 * 239.99487 * 25 23 21 29 29 C 1.46745 * 110.32065 * 76.11371 * 12 11 10 30 30 C 1.52405 * 60.53243 * 252.58288 * 8 6 4 31 31 H 1.09000 * 117.38541 * 252.73217 * 30 8 6 32 32 H 1.09004 * 109.46670 * 300.00323 * 1 2 3 33 33 H 1.08994 * 109.47133 * 60.00075 * 1 2 3 34 34 H 1.08998 * 109.46736 * 180.02562 * 1 2 3 35 35 H 1.08992 * 109.47071 * 239.99486 * 2 1 3 36 36 H 1.09004 * 109.47133 * 119.99378 * 2 1 3 37 37 H 1.09003 * 109.38658 * 190.23298 * 10 8 6 38 38 H 1.09001 * 109.38454 * 70.54140 * 10 8 6 39 39 H 1.08992 * 109.61830 * 185.78320 * 11 10 8 40 40 H 1.09008 * 109.61204 * 65.25068 * 11 10 8 41 41 H 1.09000 * 109.46853 * 178.24128 * 15 13 12 42 42 H 1.09002 * 109.47007 * 298.24042 * 15 13 12 43 43 H 1.08991 * 109.47081 * 58.24103 * 15 13 12 44 44 H 1.08994 * 109.47232 * 271.87640 * 19 18 16 45 45 H 1.09005 * 109.46687 * 31.87750 * 19 18 16 46 46 H 1.09000 * 109.47146 * 151.87179 * 19 18 16 47 47 H 1.09007 * 109.46739 * 215.61626 * 20 18 16 48 48 H 1.08998 * 109.47156 * 335.61108 * 20 18 16 49 49 H 0.96993 * 120.00084 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.35886 * 64.20855 * 29 12 11 51 51 H 1.09001 * 109.35753 * 183.80569 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 0.0000 7 1 4.0722 3.3840 0.9827 8 6 3.5214 3.8649 -1.1409 9 1 3.4194 4.9179 -0.8785 10 6 2.5498 3.3701 -2.2055 11 6 3.0020 2.0072 -2.7328 12 7 4.3943 2.1214 -3.1960 13 6 4.7349 1.0270 -4.1148 14 1 5.7965 1.0734 -4.3574 15 6 4.4221 -0.3144 -3.4484 16 6 3.9245 1.1612 -5.3783 17 8 2.9293 1.8542 -5.3895 18 7 4.3057 0.5112 -6.4956 19 6 3.5641 0.7038 -7.7443 20 6 5.4617 -0.3881 -6.4615 21 6 4.9911 -1.8035 -6.2469 22 1 3.9363 -2.0123 -6.1455 23 6 5.9070 -2.8318 -6.1788 24 7 7.1915 -2.5775 -6.3017 25 14 5.3234 -4.5863 -5.9134 26 1 3.8423 -4.6047 -5.8074 27 1 5.7484 -5.4283 -7.0604 28 1 5.9156 -5.1208 -4.6609 29 6 5.3115 2.1515 -2.0509 30 6 4.9315 3.2879 -1.1023 31 1 5.7436 3.9659 -0.8401 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5139 -0.8899 36 1 1.8934 -0.5138 0.8901 37 1 2.5198 4.0846 -3.0281 38 1 1.5541 3.2780 -1.7717 39 1 2.3637 1.7060 -3.5633 40 1 2.9415 1.2675 -1.9344 41 1 4.6455 -1.1253 -4.1417 42 1 5.0312 -0.4251 -2.5513 43 1 3.3669 -0.3482 -3.1776 44 1 2.7425 -0.0108 -7.7928 45 1 3.1660 1.7180 -7.7776 46 1 4.2320 0.5477 -8.5914 47 1 6.0001 -0.3237 -7.4072 48 1 6.1240 -0.0978 -5.6459 49 1 7.8358 -3.3009 -6.2542 50 1 5.2557 1.2021 -1.5183 51 1 6.3301 2.3040 -2.4078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932063971.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:01 Heat of formation + Delta-G solvation = -74.751018 kcal Electronic energy + Delta-G solvation = -32438.266949 eV Core-core repulsion = 28339.374722 eV Total energy + Delta-G solvation = -4098.892228 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.42531 -39.57974 -38.46738 -36.53839 -35.52761 -34.93739 -32.57213 -31.78039 -31.24547 -30.04235 -27.67564 -26.29409 -26.21676 -24.77812 -23.78112 -23.01977 -22.45520 -21.84236 -20.26715 -18.59944 -18.16615 -17.49742 -16.86917 -16.65805 -16.47660 -16.26314 -15.49187 -15.43044 -14.67523 -14.57170 -14.32191 -14.12787 -13.79309 -13.73094 -13.54420 -13.08080 -12.91201 -12.81237 -12.55081 -12.39062 -12.17008 -12.01084 -11.82403 -11.79612 -11.67251 -11.62320 -11.49105 -11.25883 -11.02947 -10.92303 -10.74464 -10.71198 -10.58532 -10.37835 -10.33974 -10.19051 -10.06211 -9.76445 -9.68866 -8.76724 -8.56812 -7.83217 -7.66906 -6.22424 -4.28564 2.19762 2.56677 3.18996 3.28052 3.30922 3.41268 3.47902 3.84003 4.28456 4.36992 4.49029 4.59673 4.72922 4.82170 4.87395 4.96929 5.09965 5.11168 5.16777 5.26604 5.40157 5.44126 5.59238 5.62924 5.65349 5.67096 5.73969 5.79690 5.84341 5.96305 5.98252 6.01240 6.07389 6.15932 6.18949 6.37638 6.40051 6.40561 6.42669 6.47567 6.53680 6.78096 6.99536 7.12064 7.41398 7.43344 7.56506 7.72335 7.78013 8.01645 8.35757 8.76368 9.05603 9.37890 10.83883 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.011600 B = 0.004113 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.193097 B = 6806.062547 C = 7590.161451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.353 6.353 4 C 0.501 3.499 5 O -0.501 6.501 6 C -0.179 4.179 7 H 0.140 0.860 8 C -0.103 4.103 9 H 0.111 0.889 10 C -0.081 4.081 11 C 0.032 3.968 12 N -0.510 5.510 13 C 0.072 3.928 14 H 0.104 0.896 15 C -0.191 4.191 16 C 0.527 3.473 17 O -0.562 6.562 18 N -0.600 5.600 19 C 0.099 3.901 20 C 0.234 3.766 21 C -0.534 4.534 22 H 0.062 0.938 23 C 0.067 3.933 24 N -0.887 5.887 25 Si 0.893 3.107 26 H -0.272 1.272 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.053 3.947 30 C -0.102 4.102 31 H 0.121 0.879 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.029 0.971 41 H 0.113 0.887 42 H 0.057 0.943 43 H 0.044 0.956 44 H 0.045 0.955 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.034 0.966 48 H 0.041 0.959 49 H 0.265 0.735 50 H 0.070 0.930 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.618 10.017 11.689 17.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.270 6.270 4 C 0.345 3.655 5 O -0.389 6.389 6 C -0.198 4.198 7 H 0.158 0.842 8 C -0.122 4.122 9 H 0.129 0.871 10 C -0.119 4.119 11 C -0.096 4.096 12 N -0.234 5.234 13 C -0.039 4.039 14 H 0.122 0.878 15 C -0.250 4.250 16 C 0.314 3.686 17 O -0.443 6.443 18 N -0.330 5.330 19 C -0.045 4.045 20 C 0.114 3.886 21 C -0.573 4.573 22 H 0.080 0.920 23 C -0.137 4.137 24 N -0.525 5.525 25 Si 0.720 3.280 26 H -0.196 1.196 27 H -0.208 1.208 28 H -0.207 1.207 29 C -0.075 4.075 30 C -0.121 4.121 31 H 0.139 0.861 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.090 0.910 39 H 0.127 0.873 40 H 0.047 0.953 41 H 0.131 0.869 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.083 0.917 47 H 0.052 0.948 48 H 0.059 0.941 49 H 0.075 0.925 50 H 0.088 0.912 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.687 10.399 11.380 17.226 hybrid contribution -0.009 -2.085 0.709 2.202 sum -7.697 8.315 12.089 16.569 Atomic orbital electron populations 1.21789 0.92566 1.02952 1.03466 1.23027 0.95437 0.80354 1.02622 1.86548 1.24459 1.32139 1.83887 1.22359 0.80634 0.91052 0.71406 1.90662 1.60331 1.42712 1.45216 1.22123 1.07445 0.92131 0.98069 0.84201 1.22107 0.96404 0.97866 0.95777 0.87140 1.20950 0.96826 0.97685 0.96446 1.22686 0.90958 0.95721 1.00187 1.62274 1.02647 1.43708 1.14788 1.21510 1.00513 0.90391 0.91460 0.87795 1.22587 1.00694 0.99175 1.02532 1.20166 0.84963 0.78723 0.84721 1.90486 1.27405 1.42032 1.84393 1.48093 1.32178 1.44241 1.08530 1.21382 0.96300 1.00601 0.86215 1.19533 0.82631 0.87806 0.98668 1.21452 0.93765 0.91546 1.50496 0.91974 1.24935 0.94745 0.99230 0.94787 1.69924 1.00724 1.32843 1.49046 0.86514 0.79101 0.84374 0.78000 1.19641 1.20763 1.20745 1.21968 0.97213 0.97214 0.91083 1.22486 0.93623 0.99994 0.95982 0.86098 0.91659 0.91245 0.90302 0.91081 0.91444 0.89955 0.90965 0.87258 0.95316 0.86879 0.92376 0.93665 0.93640 0.92198 0.91747 0.94786 0.94067 0.92490 0.91197 0.89984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.29 37.16 0.38 -0.97 16 2 C 0.06 0.70 5.98 37.16 0.22 0.93 16 3 O -0.35 -4.67 8.73 -39.25 -0.34 -5.01 16 4 C 0.50 7.15 4.10 36.01 0.15 7.30 16 5 O -0.50 -8.52 14.30 -18.76 -0.27 -8.79 16 6 C -0.18 -2.07 6.25 -91.78 -0.57 -2.65 16 7 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 8 C -0.10 -1.17 6.13 -91.57 -0.56 -1.74 16 9 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 10 C -0.08 -1.11 5.56 -27.06 -0.15 -1.26 16 11 C 0.03 0.53 3.45 -3.69 -0.01 0.51 16 12 N -0.51 -8.81 4.46 -228.06 -1.02 -9.83 16 13 C 0.07 1.40 1.90 -68.87 -0.13 1.27 16 14 H 0.10 2.05 6.49 -51.93 -0.34 1.71 16 15 C -0.19 -3.81 8.36 37.16 0.31 -3.50 16 16 C 0.53 11.17 6.76 -10.99 -0.07 11.09 16 17 O -0.56 -12.53 13.47 5.56 0.07 -12.46 16 18 N -0.60 -12.80 2.86 -182.96 -0.52 -13.32 16 19 C 0.10 1.84 10.42 59.85 0.62 2.46 16 20 C 0.23 5.48 4.75 -5.20 -0.02 5.45 16 21 C -0.53 -13.55 6.95 -34.44 -0.24 -13.78 16 22 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 23 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -24.03 13.29 55.43 0.74 -23.29 16 25 Si 0.89 20.37 29.54 -169.99 -5.02 15.35 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 C 0.05 0.81 4.94 -3.99 -0.02 0.79 16 30 C -0.10 -1.24 6.32 -90.69 -0.57 -1.81 16 31 H 0.12 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.95 7.93 -51.93 -0.41 0.54 16 36 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.07 0.91 7.93 -51.93 -0.41 0.50 16 39 H 0.11 2.12 5.27 -51.93 -0.27 1.84 16 40 H 0.03 0.49 2.85 -51.92 -0.15 0.34 16 41 H 0.11 2.54 4.84 -51.93 -0.25 2.29 16 42 H 0.06 1.13 6.71 -51.93 -0.35 0.78 16 43 H 0.04 0.89 6.67 -51.93 -0.35 0.54 16 44 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.06 1.06 7.53 -51.93 -0.39 0.67 16 46 H 0.06 1.10 7.93 -51.93 -0.41 0.69 16 47 H 0.03 0.84 7.96 -51.93 -0.41 0.42 16 48 H 0.04 1.00 5.70 -51.93 -0.30 0.70 16 49 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 50 H 0.07 1.20 3.77 -51.93 -0.20 1.00 16 51 H 0.08 1.19 8.13 -51.93 -0.42 0.77 16 LS Contribution 384.70 15.07 5.80 5.80 Total: -1.00 -29.66 384.70 -9.34 -39.00 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -8.01 Total: 6.83 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -0.77 Total: 5.73 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: -0.80 Total: -46.44 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.54 Total: -26.26 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.66 -9.34 -39.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932063971.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.751 kcal (2) G-P(sol) polarization free energy of solvation -29.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds