Wall clock time and date at job start Tue Mar 31 2020 20:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.47149 * 2 1 4 4 C 1.34231 * 116.99697 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99919 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99971 * 179.97438 * 4 3 2 7 7 H 1.09000 * 115.56439 * 272.23770 * 6 4 3 8 8 C 1.52357 * 117.57114 * 126.38012 * 6 4 3 9 9 H 1.08999 * 116.53108 * 145.69799 * 8 6 4 10 10 C 1.52391 * 119.51042 * 1.25586 * 8 6 4 11 11 C 1.52981 * 109.97320 * 310.38941 * 10 8 6 12 12 N 1.47167 * 108.60646 * 305.52268 * 11 10 8 13 13 C 1.46893 * 110.99944 * 199.59212 * 12 11 10 14 14 H 1.08993 * 109.47344 * 297.36867 * 13 12 11 15 15 C 1.53003 * 109.47099 * 177.36782 * 13 12 11 16 16 C 1.50703 * 109.47356 * 57.37139 * 13 12 11 17 17 O 1.21280 * 120.00237 * 26.30162 * 16 13 12 18 18 N 1.34777 * 119.99898 * 206.30697 * 16 13 12 19 19 C 1.46495 * 120.00313 * 359.97438 * 18 16 13 20 20 C 1.46500 * 120.00000 * 179.97438 * 18 16 13 21 21 C 1.50705 * 109.47046 * 89.99782 * 20 18 16 22 22 H 1.07994 * 119.99973 * 359.72667 * 21 20 18 23 23 C 1.37881 * 119.99695 * 179.97438 * 21 20 18 24 24 N 1.31512 * 120.00221 * 359.72531 * 23 21 20 25 25 Si 1.86801 * 119.99725 * 179.72757 * 23 21 20 26 26 H 1.48499 * 109.47075 * 59.99739 * 25 23 21 27 27 H 1.48497 * 109.47149 * 180.02562 * 25 23 21 28 28 H 1.48511 * 109.46885 * 300.00208 * 25 23 21 29 29 C 1.46740 * 110.32861 * 76.11595 * 12 11 10 30 30 C 1.52400 * 60.53194 * 252.60176 * 8 6 4 31 31 H 1.08997 * 117.04495 * 252.57137 * 30 8 6 32 32 H 1.08997 * 109.46530 * 60.00406 * 1 2 3 33 33 H 1.08998 * 109.47421 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.46938 * 300.00250 * 1 2 3 35 35 H 1.09002 * 109.46767 * 239.99418 * 2 1 3 36 36 H 1.09008 * 109.46633 * 120.00116 * 2 1 3 37 37 H 1.08998 * 109.38165 * 70.54502 * 10 8 6 38 38 H 1.09003 * 109.38394 * 190.23302 * 10 8 6 39 39 H 1.08994 * 109.61379 * 185.77954 * 11 10 8 40 40 H 1.09003 * 109.61538 * 65.25365 * 11 10 8 41 41 H 1.08994 * 109.47192 * 299.99460 * 15 13 12 42 42 H 1.08997 * 109.47081 * 60.00194 * 15 13 12 43 43 H 1.09008 * 109.46937 * 179.97438 * 15 13 12 44 44 H 1.09002 * 109.47264 * 270.00207 * 19 18 16 45 45 H 1.08999 * 109.47059 * 29.99915 * 19 18 16 46 46 H 1.08997 * 109.47578 * 150.00373 * 19 18 16 47 47 H 1.08999 * 109.47152 * 330.00408 * 20 18 16 48 48 H 1.08995 * 109.47201 * 210.00052 * 20 18 16 49 49 H 0.96996 * 119.99739 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.35928 * 64.20535 * 29 12 11 51 51 H 1.09000 * 109.36298 * 183.94099 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0005 6 6 3.9209 2.9373 -0.0012 7 1 4.0648 3.3863 -0.9839 8 6 4.9310 3.2830 1.0857 9 1 5.7311 3.9686 0.8065 10 6 5.3376 2.2193 2.0984 11 6 4.0916 1.5586 2.6910 12 7 3.2191 2.6090 3.2398 13 6 2.2668 2.0495 4.2082 14 1 1.6149 1.3351 3.7056 15 6 1.4231 3.1782 4.8043 16 6 3.0222 1.3516 5.3098 17 8 4.1537 1.6940 5.5805 18 7 2.4403 0.3468 5.9942 19 6 1.0733 -0.0665 5.6677 20 6 3.1747 -0.3320 7.0647 21 6 2.9189 0.3706 8.3732 22 1 2.2773 1.2388 8.4035 23 6 3.5081 -0.0920 9.5307 24 7 4.2890 -1.1495 9.4939 25 14 3.1971 0.7834 11.1514 26 1 1.7436 0.7612 11.4549 27 1 3.9406 0.0946 12.2367 28 1 3.6603 2.1908 11.0506 29 6 2.5180 3.3070 2.1561 30 6 3.5260 3.8693 1.1541 31 1 3.4202 4.9304 0.9281 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8901 37 1 5.9476 1.4634 1.6039 38 1 5.9161 2.6830 2.8975 39 1 4.3841 0.8732 3.4864 40 1 3.5608 1.0127 1.9109 41 1 2.0750 3.8925 5.3070 42 1 0.8767 3.6829 4.0076 43 1 0.7161 2.7629 5.5226 44 1 0.3670 0.5074 6.2676 45 1 0.8821 0.1139 4.6098 46 1 0.9536 -1.1284 5.8826 47 1 4.2418 -0.3105 6.8434 48 1 2.8392 -1.3665 7.1361 49 1 4.7038 -1.4747 10.3082 50 1 1.8534 2.6089 1.6470 51 1 1.9314 4.1255 2.5734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932063972.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:04 Heat of formation + Delta-G solvation = -71.070409 kcal Electronic energy + Delta-G solvation = -31967.131845 eV Core-core repulsion = 27868.399220 eV Total energy + Delta-G solvation = -4098.732624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.57042 -39.64590 -38.54986 -36.76702 -35.55200 -34.69716 -32.64068 -32.10270 -31.64033 -30.14652 -27.77688 -26.83614 -25.83523 -25.13135 -23.61282 -23.42685 -22.60791 -21.52463 -20.39694 -18.94401 -18.31507 -17.59547 -17.21265 -16.61373 -16.50119 -16.47879 -15.75248 -15.57612 -14.89779 -14.76053 -14.35633 -14.16273 -13.95216 -13.81333 -13.49950 -13.25018 -13.14129 -12.97595 -12.77424 -12.32280 -12.21696 -12.18182 -12.07290 -12.01444 -11.88973 -11.77026 -11.57047 -11.37270 -11.15944 -10.98926 -10.88788 -10.79722 -10.69229 -10.53857 -10.46609 -10.17692 -10.12447 -9.92080 -9.61147 -8.75617 -8.40895 -8.08378 -7.60894 -6.01809 -4.06365 2.01202 2.36567 3.27195 3.33451 3.37988 3.39776 3.47400 3.71934 4.15078 4.35560 4.39066 4.47168 4.55377 4.63657 4.68623 4.77937 4.88751 4.98542 5.02910 5.14604 5.20337 5.26035 5.33147 5.37071 5.39642 5.43490 5.47897 5.56303 5.61821 5.66026 5.68916 5.77896 5.83243 5.90503 5.92690 5.98036 6.03262 6.15624 6.18386 6.22875 6.33118 6.41220 6.97184 7.12389 7.18945 7.45776 7.57168 7.58641 7.94578 8.25889 8.44162 8.93139 9.15389 9.58602 11.06293 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016111 B = 0.003236 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.515157 B = 8651.705095 C = 9155.252967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.354 6.354 4 C 0.501 3.499 5 O -0.498 6.498 6 C -0.176 4.176 7 H 0.142 0.858 8 C -0.091 4.091 9 H 0.116 0.884 10 C -0.085 4.085 11 C 0.038 3.962 12 N -0.507 5.507 13 C 0.063 3.937 14 H 0.053 0.947 15 C -0.138 4.138 16 C 0.509 3.491 17 O -0.519 6.519 18 N -0.604 5.604 19 C 0.084 3.916 20 C 0.247 3.753 21 C -0.525 4.525 22 H 0.056 0.944 23 C 0.061 3.939 24 N -0.896 5.896 25 Si 0.898 3.102 26 H -0.277 1.277 27 H -0.286 1.286 28 H -0.276 1.276 29 C 0.064 3.936 30 C -0.115 4.115 31 H 0.121 0.879 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.066 0.934 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.067 0.933 47 H 0.043 0.957 48 H 0.031 0.969 49 H 0.263 0.737 50 H 0.055 0.945 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 7.029 -22.219 24.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.016 4.016 3 O -0.272 6.272 4 C 0.345 3.655 5 O -0.386 6.386 6 C -0.195 4.195 7 H 0.160 0.840 8 C -0.110 4.110 9 H 0.134 0.866 10 C -0.122 4.122 11 C -0.089 4.089 12 N -0.232 5.232 13 C -0.048 4.048 14 H 0.071 0.929 15 C -0.195 4.195 16 C 0.294 3.706 17 O -0.395 6.395 18 N -0.337 5.337 19 C -0.060 4.060 20 C 0.128 3.872 21 C -0.564 4.564 22 H 0.075 0.925 23 C -0.141 4.141 24 N -0.535 5.535 25 Si 0.725 3.275 26 H -0.203 1.203 27 H -0.212 1.212 28 H -0.201 1.201 29 C -0.064 4.064 30 C -0.134 4.134 31 H 0.139 0.861 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.069 0.931 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.061 0.939 48 H 0.049 0.951 49 H 0.073 0.927 50 H 0.073 0.927 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.239 7.079 -21.673 23.922 hybrid contribution -0.749 -0.366 0.442 0.944 sum -7.988 6.713 -21.231 23.656 Atomic orbital electron populations 1.21800 0.92387 1.03119 1.03517 1.23067 0.95555 0.80303 1.02691 1.86562 1.24587 1.32263 1.83783 1.22447 0.80544 0.91198 0.71347 1.90700 1.60485 1.42557 1.44840 1.22180 1.07524 0.91572 0.98221 0.84026 1.22074 0.92795 1.00378 0.95729 0.86552 1.20949 0.97645 0.96649 0.96978 1.22509 0.94223 0.93357 0.98828 1.62021 1.19949 1.27746 1.13462 1.21721 0.93149 0.96620 0.93319 0.92922 1.21739 0.99142 0.97812 1.00850 1.19999 0.87104 0.80421 0.83039 1.90678 1.18443 1.63171 1.67158 1.48181 1.14654 1.34662 1.36248 1.21669 0.84598 1.00907 0.98843 1.19279 0.92899 0.91642 0.83364 1.21385 1.29381 1.13415 0.92183 0.92544 1.24930 0.94906 0.95076 0.99163 1.69920 1.31316 1.23633 1.28605 0.86566 0.78167 0.79944 0.82790 1.20283 1.21191 1.20145 1.21945 0.94428 0.99071 0.90953 1.22504 0.97274 0.98025 0.95585 0.86069 0.91502 0.90127 0.91370 0.91212 0.91209 0.90562 0.89401 0.89477 0.94766 0.90888 0.91999 0.91537 0.93128 0.92874 0.91427 0.93945 0.95108 0.92689 0.92680 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 10.29 37.16 0.38 -0.64 16 2 C 0.06 0.55 6.19 37.16 0.23 0.78 16 3 O -0.35 -3.93 8.08 -39.26 -0.32 -4.25 16 4 C 0.50 6.19 4.14 36.01 0.15 6.34 16 5 O -0.50 -7.51 14.72 -18.75 -0.28 -7.78 16 6 C -0.18 -1.75 6.25 -91.79 -0.57 -2.33 16 7 H 0.14 1.03 8.14 -51.93 -0.42 0.61 16 8 C -0.09 -0.99 6.12 -91.57 -0.56 -1.55 16 9 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 10 C -0.08 -1.20 5.51 -27.05 -0.15 -1.34 16 11 C 0.04 0.61 4.81 -3.69 -0.02 0.60 16 12 N -0.51 -7.70 4.22 -228.06 -0.96 -8.66 16 13 C 0.06 1.01 1.80 -68.87 -0.12 0.88 16 14 H 0.05 0.75 6.00 -51.93 -0.31 0.44 16 15 C -0.14 -1.90 8.92 37.16 0.33 -1.56 16 16 C 0.51 10.81 5.59 -10.98 -0.06 10.75 16 17 O -0.52 -13.33 15.08 5.56 0.08 -13.24 16 18 N -0.60 -13.01 2.86 -182.96 -0.52 -13.53 16 19 C 0.08 1.35 10.11 59.84 0.61 1.96 16 20 C 0.25 6.57 5.20 -5.19 -0.03 6.54 16 21 C -0.52 -15.06 9.39 -34.44 -0.32 -15.38 16 22 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 23 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 25 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 28 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 29 C 0.06 0.74 4.76 -3.99 -0.02 0.72 16 30 C -0.12 -1.14 6.32 -90.69 -0.57 -1.71 16 31 H 0.12 0.90 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 36 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.08 1.08 7.91 -51.93 -0.41 0.67 16 38 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 39 H 0.09 1.70 5.90 -51.93 -0.31 1.40 16 40 H 0.03 0.54 3.93 -51.93 -0.20 0.34 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.06 0.66 6.40 -51.93 -0.33 0.33 16 43 H 0.07 0.90 7.95 -51.92 -0.41 0.48 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.69 5.83 -51.93 -0.30 0.38 16 46 H 0.07 1.04 7.89 -51.93 -0.41 0.63 16 47 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 48 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.06 0.64 5.37 -51.93 -0.28 0.36 16 51 H 0.09 0.91 6.31 -51.93 -0.33 0.59 16 LS Contribution 394.45 15.07 5.94 5.94 Total: -1.00 -35.11 394.45 -9.45 -44.56 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -8.29 Total: 0.35 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: -0.83 Total: 5.71 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.75 Total: -48.37 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.51 Total: -25.27 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.11 -9.45 -44.56 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932063972.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.506 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds