Wall clock time and date at job start Tue Mar 31 2020 20:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45198 * 109.47149 * 2 1 4 4 C 1.34231 * 116.99697 * 180.02562 * 3 2 1 5 5 O 1.20832 * 119.99919 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99971 * 179.97438 * 4 3 2 7 7 H 1.09000 * 115.56439 * 272.23770 * 6 4 3 8 8 C 1.52357 * 117.57114 * 126.38012 * 6 4 3 9 9 H 1.08999 * 116.53108 * 145.69799 * 8 6 4 10 10 C 1.52391 * 119.51042 * 1.25586 * 8 6 4 11 11 C 1.52981 * 109.97320 * 310.38941 * 10 8 6 12 12 N 1.47167 * 108.60646 * 305.52268 * 11 10 8 13 13 C 1.46893 * 110.99944 * 199.59212 * 12 11 10 14 14 H 1.08993 * 109.47344 * 297.36867 * 13 12 11 15 15 C 1.53003 * 109.47099 * 177.36782 * 13 12 11 16 16 C 1.50703 * 109.47356 * 57.37139 * 13 12 11 17 17 O 1.21280 * 120.00237 * 26.30162 * 16 13 12 18 18 N 1.34777 * 119.99898 * 206.30697 * 16 13 12 19 19 C 1.46495 * 120.00313 * 359.97438 * 18 16 13 20 20 C 1.46500 * 120.00000 * 179.97438 * 18 16 13 21 21 C 1.50705 * 109.47046 * 89.99782 * 20 18 16 22 22 H 1.07994 * 119.99973 * 359.72667 * 21 20 18 23 23 C 1.37881 * 119.99695 * 179.97438 * 21 20 18 24 24 N 1.31512 * 120.00221 * 359.72531 * 23 21 20 25 25 Si 1.86801 * 119.99725 * 179.72757 * 23 21 20 26 26 H 1.48499 * 109.47075 * 59.99739 * 25 23 21 27 27 H 1.48497 * 109.47149 * 180.02562 * 25 23 21 28 28 H 1.48511 * 109.46885 * 300.00208 * 25 23 21 29 29 C 1.46740 * 110.32861 * 76.11595 * 12 11 10 30 30 C 1.52400 * 60.53194 * 252.60176 * 8 6 4 31 31 H 1.08997 * 117.04495 * 252.57137 * 30 8 6 32 32 H 1.08997 * 109.46530 * 60.00406 * 1 2 3 33 33 H 1.08998 * 109.47421 * 180.02562 * 1 2 3 34 34 H 1.08994 * 109.46938 * 300.00250 * 1 2 3 35 35 H 1.09002 * 109.46767 * 239.99418 * 2 1 3 36 36 H 1.09008 * 109.46633 * 120.00116 * 2 1 3 37 37 H 1.08998 * 109.38165 * 70.54502 * 10 8 6 38 38 H 1.09003 * 109.38394 * 190.23302 * 10 8 6 39 39 H 1.08994 * 109.61379 * 185.77954 * 11 10 8 40 40 H 1.09003 * 109.61538 * 65.25365 * 11 10 8 41 41 H 1.08994 * 109.47192 * 299.99460 * 15 13 12 42 42 H 1.08997 * 109.47081 * 60.00194 * 15 13 12 43 43 H 1.09008 * 109.46937 * 179.97438 * 15 13 12 44 44 H 1.09002 * 109.47264 * 270.00207 * 19 18 16 45 45 H 1.08999 * 109.47059 * 29.99915 * 19 18 16 46 46 H 1.08997 * 109.47578 * 150.00373 * 19 18 16 47 47 H 1.08999 * 109.47152 * 330.00408 * 20 18 16 48 48 H 1.08995 * 109.47201 * 210.00052 * 20 18 16 49 49 H 0.96996 * 119.99739 * 179.97438 * 24 23 21 50 50 H 1.09000 * 109.35928 * 64.20535 * 29 12 11 51 51 H 1.09000 * 109.36298 * 183.94099 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5864 -0.0005 6 6 3.9209 2.9373 -0.0012 7 1 4.0648 3.3863 -0.9839 8 6 4.9310 3.2830 1.0857 9 1 5.7311 3.9686 0.8065 10 6 5.3376 2.2193 2.0984 11 6 4.0916 1.5586 2.6910 12 7 3.2191 2.6090 3.2398 13 6 2.2668 2.0495 4.2082 14 1 1.6149 1.3351 3.7056 15 6 1.4231 3.1782 4.8043 16 6 3.0222 1.3516 5.3098 17 8 4.1537 1.6940 5.5805 18 7 2.4403 0.3468 5.9942 19 6 1.0733 -0.0665 5.6677 20 6 3.1747 -0.3320 7.0647 21 6 2.9189 0.3706 8.3732 22 1 2.2773 1.2388 8.4035 23 6 3.5081 -0.0920 9.5307 24 7 4.2890 -1.1495 9.4939 25 14 3.1971 0.7834 11.1514 26 1 1.7436 0.7612 11.4549 27 1 3.9406 0.0946 12.2367 28 1 3.6603 2.1908 11.0506 29 6 2.5180 3.3070 2.1561 30 6 3.5260 3.8693 1.1541 31 1 3.4202 4.9304 0.9281 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8901 37 1 5.9476 1.4634 1.6039 38 1 5.9161 2.6830 2.8975 39 1 4.3841 0.8732 3.4864 40 1 3.5608 1.0127 1.9109 41 1 2.0750 3.8925 5.3070 42 1 0.8767 3.6829 4.0076 43 1 0.7161 2.7629 5.5226 44 1 0.3670 0.5074 6.2676 45 1 0.8821 0.1139 4.6098 46 1 0.9536 -1.1284 5.8826 47 1 4.2418 -0.3105 6.8434 48 1 2.8392 -1.3665 7.1361 49 1 4.7038 -1.4747 10.3082 50 1 1.8534 2.6089 1.6470 51 1 1.9314 4.1255 2.5734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932063972.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:03 Heat of formation + Delta-G solvation = -94.273995 kcal Electronic energy + Delta-G solvation = -31968.138028 eV Core-core repulsion = 27868.399220 eV Total energy + Delta-G solvation = -4099.738807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.53615 -41.04417 -39.70714 -37.75190 -36.83065 -36.41802 -34.74522 -33.09060 -32.51554 -31.35278 -29.67604 -27.85007 -27.35365 -26.18478 -25.36623 -24.41504 -23.50379 -23.00827 -21.26098 -19.95282 -19.87552 -18.70837 -18.54347 -18.11947 -18.03528 -17.64940 -16.95812 -16.75328 -16.45138 -16.08737 -15.84864 -15.40764 -15.23730 -14.79312 -14.64064 -14.46954 -14.27527 -14.08368 -14.01082 -13.66985 -13.52674 -13.50300 -13.38565 -13.18857 -13.06294 -12.88328 -12.80232 -12.69106 -12.62118 -12.51579 -12.46769 -12.20542 -12.04744 -11.80223 -11.70611 -11.60901 -11.46725 -11.03974 -10.84835 -10.65535 -10.43076 -9.44666 -9.24862 -8.23507 -6.38721 1.08431 1.35351 1.40443 1.47564 1.56439 1.81172 2.16254 2.39018 2.54691 2.88275 3.05864 3.51146 3.56054 3.61842 3.70257 3.85144 3.85573 3.93601 3.98814 4.04444 4.14554 4.24454 4.28992 4.31552 4.38467 4.41541 4.58798 4.65171 4.70020 4.74578 4.81095 4.84219 4.88137 4.89999 4.91116 4.95551 5.00598 5.06858 5.12139 5.13270 5.17356 5.18216 5.27966 5.42633 5.53891 5.79398 5.88352 6.03993 6.07312 6.67267 6.68343 6.76488 7.27277 7.48957 8.83654 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.016111 B = 0.003236 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.515157 B = 8651.705095 C = 9155.252967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.051 3.949 3 O -0.351 6.351 4 C 0.495 3.505 5 O -0.536 6.536 6 C -0.167 4.167 7 H 0.178 0.822 8 C -0.106 4.106 9 H 0.144 0.856 10 C -0.083 4.083 11 C 0.046 3.954 12 N -0.520 5.520 13 C 0.076 3.924 14 H 0.075 0.925 15 C -0.132 4.132 16 C 0.500 3.500 17 O -0.577 6.577 18 N -0.612 5.612 19 C 0.079 3.921 20 C 0.262 3.738 21 C -0.541 4.541 22 H 0.054 0.946 23 C 0.007 3.993 24 N -0.930 5.930 25 Si 0.969 3.031 26 H -0.258 1.258 27 H -0.278 1.278 28 H -0.278 1.278 29 C 0.057 3.943 30 C -0.105 4.105 31 H 0.160 0.840 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.037 0.963 40 H 0.038 0.962 41 H 0.050 0.950 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.071 0.929 47 H -0.008 1.008 48 H 0.022 0.978 49 H 0.267 0.733 50 H 0.059 0.941 51 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.481 9.577 -23.767 28.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.023 4.023 3 O -0.268 6.268 4 C 0.340 3.660 5 O -0.426 6.426 6 C -0.186 4.186 7 H 0.195 0.805 8 C -0.125 4.125 9 H 0.161 0.839 10 C -0.121 4.121 11 C -0.082 4.082 12 N -0.246 5.246 13 C -0.036 4.036 14 H 0.092 0.908 15 C -0.189 4.189 16 C 0.288 3.712 17 O -0.456 6.456 18 N -0.345 5.345 19 C -0.063 4.063 20 C 0.141 3.859 21 C -0.580 4.580 22 H 0.073 0.927 23 C -0.192 4.192 24 N -0.570 5.570 25 Si 0.793 3.207 26 H -0.182 1.182 27 H -0.203 1.203 28 H -0.203 1.203 29 C -0.069 4.069 30 C -0.124 4.124 31 H 0.178 0.822 32 H 0.095 0.905 33 H 0.113 0.887 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.069 0.931 42 H 0.122 0.878 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.089 0.911 47 H 0.010 0.990 48 H 0.040 0.960 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.340 9.631 -23.253 27.210 hybrid contribution 0.217 -1.261 0.886 1.557 sum -10.123 8.370 -22.367 25.939 Atomic orbital electron populations 1.21807 0.89863 1.04314 1.04083 1.23252 0.97492 0.79653 1.01872 1.86565 1.23903 1.32985 1.83308 1.23068 0.80732 0.91934 0.70254 1.90695 1.61313 1.44000 1.46590 1.22365 1.06237 0.90208 0.99766 0.80490 1.22081 0.94585 1.00104 0.95682 0.83867 1.20826 0.96489 0.97417 0.97353 1.22324 0.95467 0.93251 0.97155 1.62031 1.20469 1.27272 1.14811 1.21657 0.92753 0.97473 0.91683 0.90771 1.21759 0.98538 0.96524 1.02099 1.21082 0.86718 0.79788 0.83623 1.90636 1.21130 1.64872 1.69004 1.48207 1.16540 1.34591 1.35118 1.21959 0.81569 1.01372 1.01422 1.18731 0.90793 0.91691 0.84702 1.21649 1.29606 1.13482 0.93247 0.92740 1.25893 0.94392 0.95754 1.03176 1.70053 1.32087 1.25053 1.29804 0.85450 0.79103 0.78218 0.77940 1.18202 1.20336 1.20317 1.22166 0.95031 0.99348 0.90341 1.22706 0.95368 0.99777 0.94506 0.82239 0.90472 0.88663 0.91166 0.91183 0.93045 0.91752 0.91557 0.94413 0.94389 0.93057 0.87768 0.91102 0.91693 0.89175 0.91065 0.98996 0.96012 0.92405 0.92274 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 10.29 71.98 0.74 -0.85 16 2 C 0.05 0.91 6.19 71.98 0.45 1.36 16 3 O -0.35 -7.07 8.08 -51.43 -0.42 -7.48 16 4 C 0.49 11.54 4.14 71.24 0.30 11.84 16 5 O -0.54 -16.33 14.72 21.95 0.32 -16.01 16 6 C -0.17 -2.81 6.25 -11.55 -0.07 -2.88 16 7 H 0.18 1.74 8.14 -2.39 -0.02 1.72 16 8 C -0.11 -2.10 6.12 -11.41 -0.07 -2.17 16 9 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 10 C -0.08 -2.46 5.51 30.39 0.17 -2.29 16 11 C 0.05 1.54 4.81 86.25 0.41 1.95 16 12 N -0.52 -15.45 4.22 -875.46 -3.70 -19.15 16 13 C 0.08 2.33 1.80 44.17 0.08 2.41 16 14 H 0.07 1.95 6.00 -2.39 -0.01 1.94 16 15 C -0.13 -3.28 8.92 71.98 0.64 -2.64 16 16 C 0.50 22.09 5.59 87.66 0.49 22.58 16 17 O -0.58 -31.81 15.08 -3.03 -0.05 -31.86 16 18 N -0.61 -27.28 2.86 -851.14 -2.43 -29.71 16 19 C 0.08 2.46 10.11 127.77 1.29 3.75 16 20 C 0.26 14.77 5.20 85.63 0.45 15.22 16 21 C -0.54 -32.06 9.39 25.60 0.24 -31.82 16 22 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 23 C 0.01 0.39 5.46 84.66 0.46 0.86 16 24 N -0.93 -57.74 13.29 21.45 0.28 -57.45 16 25 Si 0.97 45.72 29.54 68.60 2.03 47.75 16 26 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 29 C 0.06 1.14 4.76 86.28 0.41 1.55 16 30 C -0.11 -1.67 6.32 -10.84 -0.07 -1.74 16 31 H 0.16 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 36 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 37 H 0.06 1.98 7.91 -2.39 -0.02 1.96 16 38 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.04 1.62 5.90 -2.39 -0.01 1.60 16 40 H 0.04 1.23 3.93 -2.39 -0.01 1.23 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.10 1.72 6.40 -2.39 -0.02 1.71 16 43 H 0.07 1.71 7.95 -2.38 -0.02 1.69 16 44 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.09 2.11 5.83 -2.39 -0.01 2.10 16 46 H 0.07 2.16 7.89 -2.39 -0.02 2.14 16 47 H -0.01 -0.53 7.42 -2.39 -0.02 -0.55 16 48 H 0.02 1.24 7.89 -2.39 -0.02 1.22 16 49 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 50 H 0.06 1.16 5.37 -2.39 -0.01 1.15 16 51 H 0.11 1.74 6.31 -2.39 -0.02 1.72 16 Total: -1.00 -83.64 394.45 2.89 -80.76 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: 0.93 Total: 16.03 kcal Atomic # 6 Polarization: 11.21 SS G_CDS: 5.92 Total: 17.13 kcal Atomic # 7 Polarization: -100.47 SS G_CDS: -5.84 Total: -106.32 kcal Atomic # 8 Polarization: -55.21 SS G_CDS: -0.14 Total: -55.35 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -83.64 2.89 -80.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932063972.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.515 kcal (2) G-P(sol) polarization free energy of solvation -83.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds