Wall clock time and date at job start Tue Mar 31 2020 21:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42905 * 113.99695 * 2 1 4 4 H 1.08996 * 109.46940 * 30.00427 * 3 2 1 5 5 C 1.50703 * 109.47002 * 270.00071 * 3 2 1 6 6 O 1.21284 * 119.99862 * 354.99927 * 5 3 2 7 7 N 1.34774 * 119.99440 * 175.00570 * 5 3 2 8 8 C 1.46928 * 120.64763 * 359.71699 * 7 5 3 9 9 C 1.53624 * 108.53778 * 126.30003 * 8 7 5 10 10 C 1.52995 * 109.27709 * 54.80294 * 9 8 7 11 11 C 1.52982 * 109.63462 * 298.66546 * 10 9 8 12 12 C 1.46938 * 120.63627 * 180.02562 * 7 5 3 13 13 C 1.53250 * 109.36387 * 178.71475 * 10 9 8 14 14 N 1.47149 * 108.41340 * 187.91931 * 13 10 9 15 15 C 1.36932 * 120.98860 * 230.50175 * 14 13 10 16 16 H 1.08002 * 120.00072 * 26.57257 * 15 14 13 17 17 C 1.38815 * 120.00131 * 206.57640 * 15 14 13 18 18 N 1.31619 * 119.99589 * 17.03059 * 17 15 14 19 19 Si 1.86800 * 120.00366 * 197.02809 * 17 15 14 20 20 H 1.48501 * 109.46958 * 94.15066 * 19 17 15 21 21 H 1.48494 * 109.47323 * 214.15468 * 19 17 15 22 22 H 1.48506 * 109.47170 * 334.15708 * 19 17 15 23 23 C 1.47153 * 118.02482 * 50.47372 * 14 13 10 24 24 C 1.53294 * 108.37345 * 309.40862 * 23 14 13 25 25 O 1.42902 * 109.54388 * 58.91707 * 10 9 8 26 26 C 1.52999 * 109.46412 * 150.00175 * 3 2 1 27 27 C 1.52997 * 117.50566 * 8.62238 * 26 3 2 28 28 C 1.52995 * 117.50369 * 299.99613 * 26 3 2 29 29 H 1.08997 * 109.46675 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46614 * 300.00014 * 1 2 3 31 31 H 1.08995 * 109.46938 * 59.99940 * 1 2 3 32 32 H 1.08997 * 109.58866 * 246.13096 * 8 7 5 33 33 H 1.08997 * 109.58511 * 6.55540 * 8 7 5 34 34 H 1.09006 * 109.62543 * 294.80309 * 9 8 7 35 35 H 1.08997 * 109.44666 * 174.70311 * 9 8 7 36 36 H 1.09005 * 109.49201 * 301.23620 * 11 10 9 37 37 H 1.09000 * 109.50952 * 181.17919 * 11 10 9 38 38 H 1.09000 * 109.58725 * 353.43556 * 12 7 5 39 39 H 1.08996 * 109.58585 * 113.72190 * 12 7 5 40 40 H 1.09002 * 109.67868 * 307.65141 * 13 10 9 41 41 H 1.09009 * 109.67278 * 68.14960 * 13 10 9 42 42 H 0.97003 * 119.99957 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.68546 * 69.12942 * 23 14 13 44 44 H 1.09001 * 109.68424 * 189.68867 * 23 14 13 45 45 H 1.09005 * 109.51124 * 172.27681 * 24 23 14 46 46 H 1.08997 * 109.51603 * 292.37561 * 24 23 14 47 47 H 1.09006 * 115.54316 * 154.32916 * 26 3 2 48 48 H 1.08999 * 117.49451 * 359.97438 * 27 26 3 49 49 H 1.08995 * 117.50375 * 145.02003 * 27 26 3 50 50 H 1.08999 * 117.50402 * 214.98939 * 28 26 3 51 51 H 1.09002 * 117.49469 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9993 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 1.9792 1.0106 -2.3413 7 7 2.6589 3.0125 -1.6685 8 6 2.9427 3.9393 -0.5643 9 6 4.3765 4.4668 -0.7257 10 6 4.5352 5.0805 -2.1181 11 6 4.2923 4.0091 -3.1828 12 6 2.8625 3.4748 -3.0483 13 6 5.9554 5.6361 -2.2696 14 7 6.0286 6.3863 -3.5335 15 6 7.0298 6.1491 -4.4371 16 1 7.5065 5.1807 -4.4730 17 6 7.4319 7.1534 -5.3069 18 7 7.1107 8.4056 -5.0598 19 14 8.4291 6.7277 -6.8280 20 1 7.5158 6.5540 -7.9860 21 1 9.3882 7.8247 -7.1142 22 1 9.1760 5.4659 -6.5932 23 6 4.9937 7.3984 -3.7977 24 6 3.6204 6.7550 -3.5742 25 8 3.5923 6.1415 -2.2833 26 6 3.3589 1.2632 0.7212 27 6 3.9140 -0.1108 1.1017 28 6 3.3636 0.8186 2.1852 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 2.2388 4.7710 -0.5953 33 1 2.8497 3.4144 0.3864 34 1 5.0840 3.6461 -0.6071 35 1 4.5709 5.2267 0.0312 36 1 5.0007 3.1922 -3.0450 37 1 4.4264 4.4435 -4.1735 38 1 2.7167 2.6431 -3.7376 39 1 2.1505 4.2679 -3.2767 40 1 6.1807 6.3001 -1.4351 41 1 6.6710 4.8140 -2.2881 42 1 7.3920 9.1075 -5.6674 43 1 5.1203 8.2396 -3.1161 44 1 5.0735 7.7449 -4.8281 45 1 2.8463 7.5204 -3.6305 46 1 3.4427 6.0006 -4.3406 47 1 4.0741 2.0311 0.4261 48 1 3.3180 -0.9847 0.8385 49 1 4.9944 -0.2473 1.0568 50 1 4.0820 1.2938 2.8532 51 1 2.4058 0.5567 2.6346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949355769.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:51:39 Heat of formation + Delta-G solvation = -59.087354 kcal Electronic energy + Delta-G solvation = -31964.807855 eV Core-core repulsion = 27866.594855 eV Total energy + Delta-G solvation = -4098.213000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.77200 -39.39903 -37.91092 -36.60528 -35.85926 -34.38862 -32.55574 -31.38381 -31.06364 -29.05663 -28.31362 -26.67277 -26.17110 -23.76151 -23.35132 -22.84733 -22.54375 -21.39456 -20.99796 -19.59956 -18.56474 -17.53021 -16.97921 -16.86958 -16.31616 -15.77752 -15.35962 -15.27426 -15.01850 -14.71216 -14.51917 -14.37872 -14.24619 -13.81605 -13.64453 -13.48965 -13.31435 -12.96096 -12.84841 -12.57788 -12.05874 -11.93413 -11.79958 -11.62191 -11.56103 -11.52158 -11.13817 -11.09062 -10.93876 -10.81016 -10.74463 -10.62379 -10.58662 -10.36099 -10.25115 -10.19924 -9.96737 -9.50153 -9.21915 -9.03222 -8.58622 -8.47341 -6.74033 -5.85684 -3.29177 2.52045 2.88660 3.33274 3.40994 3.41870 3.42569 3.64231 4.22132 4.30402 4.42082 4.48141 4.62725 4.75317 4.83430 4.95444 5.00759 5.05577 5.13656 5.22937 5.26091 5.30621 5.31715 5.38887 5.45117 5.46026 5.49023 5.55195 5.67144 5.70501 5.83786 5.86186 5.97193 6.02732 6.06330 6.10179 6.12004 6.20066 6.36868 6.39418 6.46046 6.53797 6.67587 6.74892 6.82059 7.11121 7.43430 7.50114 7.70443 7.91286 8.17504 8.32280 9.10437 9.73322 10.30444 11.22066 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.020023 B = 0.002940 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.078934 B = 9522.902226 C = 9576.078502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.106 3.894 4 H 0.087 0.913 5 C 0.495 3.505 6 O -0.532 6.532 7 N -0.603 5.603 8 C 0.104 3.896 9 C -0.118 4.118 10 C 0.107 3.893 11 C -0.148 4.148 12 C 0.117 3.883 13 C 0.127 3.873 14 N -0.591 5.591 15 C -0.253 4.253 16 H 0.068 0.932 17 C 0.003 3.997 18 N -0.902 5.902 19 Si 0.903 3.097 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.278 1.278 23 C 0.142 3.858 24 C 0.036 3.964 25 O -0.382 6.382 26 C -0.169 4.169 27 C -0.157 4.157 28 C -0.168 4.168 29 H 0.089 0.911 30 H 0.041 0.959 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.025 0.975 41 H 0.059 0.941 42 H 0.254 0.746 43 H 0.026 0.974 44 H 0.092 0.908 45 H 0.078 0.922 46 H 0.044 0.956 47 H 0.126 0.874 48 H 0.107 0.893 49 H 0.094 0.906 50 H 0.098 0.902 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.839 -11.388 13.912 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.273 6.273 3 C 0.045 3.955 4 H 0.105 0.895 5 C 0.282 3.718 6 O -0.408 6.408 7 N -0.338 5.338 8 C -0.019 4.019 9 C -0.156 4.156 10 C 0.065 3.935 11 C -0.187 4.187 12 C -0.005 4.005 13 C 0.000 4.000 14 N -0.315 5.315 15 C -0.382 4.382 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.547 5.547 19 Si 0.733 3.267 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.204 1.204 23 C 0.016 3.984 24 C -0.042 4.042 25 O -0.301 6.301 26 C -0.187 4.187 27 C -0.194 4.194 28 C -0.205 4.205 29 H 0.108 0.892 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.044 0.956 44 H 0.110 0.890 45 H 0.097 0.903 46 H 0.062 0.938 47 H 0.143 0.857 48 H 0.125 0.875 49 H 0.113 0.887 50 H 0.117 0.883 51 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -11.919 -11.774 13.454 21.487 hybrid contribution 0.601 0.327 -1.133 1.324 sum -11.318 -11.448 12.321 20.272 Atomic orbital electron populations 1.22857 0.80695 1.03157 1.00022 1.87969 1.19907 1.24994 1.94405 1.21408 0.95303 0.86471 0.92321 0.89496 1.21160 0.77429 0.81418 0.91821 1.90687 1.50778 1.53355 1.46026 1.48187 1.65125 1.12413 1.08040 1.21968 0.97579 0.93213 0.89092 1.21947 0.96167 1.00421 0.97097 1.21785 0.91689 0.86743 0.93247 1.22353 0.95581 0.98689 1.02037 1.21592 0.97300 0.99439 0.82143 1.21513 0.93010 0.95495 0.90003 1.44038 1.28182 1.43156 1.16127 1.19189 1.12459 0.95588 1.11003 0.91463 1.25035 0.99042 0.94791 1.00702 1.70036 1.49425 0.98512 1.36701 0.86263 0.79575 0.77500 0.83376 1.21407 1.21734 1.20352 1.21402 0.84365 0.90255 1.02378 1.23328 1.00213 0.96250 0.84421 1.87763 1.58523 1.49787 1.34045 1.22446 0.96781 1.01449 0.98015 1.22881 1.00844 0.93941 1.01761 1.22962 1.03211 1.03853 0.90453 0.89241 0.94018 0.93626 0.90287 0.89695 0.90526 0.89901 0.91353 0.88820 0.89602 0.91296 0.95693 0.92297 0.93557 0.95579 0.89012 0.90346 0.93787 0.85652 0.87468 0.88719 0.88340 0.88659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.81 101.05 1.09 1.35 16 2 O -0.36 -4.20 8.24 -55.09 -0.45 -4.66 16 3 C 0.11 1.17 2.04 -27.88 -0.06 1.11 16 4 H 0.09 0.77 7.32 -51.93 -0.38 0.39 16 5 C 0.49 7.07 7.06 -10.99 -0.08 6.99 16 6 O -0.53 -9.66 15.92 -14.31 -0.23 -9.89 16 7 N -0.60 -8.09 2.96 -172.47 -0.51 -8.60 16 8 C 0.10 1.16 5.22 -3.48 -0.02 1.14 16 9 C -0.12 -1.48 4.95 -26.41 -0.13 -1.61 16 10 C 0.11 1.75 0.68 -90.50 -0.06 1.69 16 11 C -0.15 -2.44 4.33 -26.62 -0.12 -2.55 16 12 C 0.12 1.76 6.20 -3.68 -0.02 1.74 16 13 C 0.13 2.54 5.39 -3.56 -0.02 2.52 16 14 N -0.59 -14.22 2.55 -171.85 -0.44 -14.66 16 15 C -0.25 -6.71 9.64 -15.06 -0.15 -6.86 16 16 H 0.07 1.77 7.89 -52.49 -0.41 1.35 16 17 C 0.00 0.08 4.94 -17.43 -0.09 0.00 16 18 N -0.90 -25.60 11.17 55.49 0.62 -24.98 16 19 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 20 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C 0.14 3.27 5.44 -3.53 -0.02 3.25 16 24 C 0.04 0.66 6.60 37.31 0.25 0.91 16 25 O -0.38 -6.75 9.00 -35.23 -0.32 -7.07 16 26 C -0.17 -1.62 4.45 -90.62 -0.40 -2.02 16 27 C -0.16 -1.48 9.87 -26.73 -0.26 -1.74 16 28 C -0.17 -1.28 10.19 -26.74 -0.27 -1.56 16 29 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.28 8.09 -51.93 -0.42 -0.14 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.91 7.82 -51.93 -0.41 0.51 16 33 H 0.08 0.73 4.54 -51.93 -0.24 0.50 16 34 H 0.08 0.90 7.45 -51.93 -0.39 0.51 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.09 1.76 6.16 -51.93 -0.32 1.44 16 38 H 0.09 1.38 7.01 -51.93 -0.36 1.02 16 39 H 0.07 1.04 7.83 -51.93 -0.41 0.63 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 1.16 7.95 -51.92 -0.41 0.74 16 42 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 2.35 6.17 -51.93 -0.32 2.03 16 45 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 46 H 0.04 0.81 6.29 -51.93 -0.33 0.48 16 47 H 0.13 1.20 5.56 -51.93 -0.29 0.91 16 48 H 0.11 1.12 7.06 -51.93 -0.37 0.76 16 49 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 51 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 385.44 15.07 5.81 5.81 Total: -1.00 -31.67 385.44 -9.31 -40.98 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -8.41 Total: 2.40 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -0.35 Total: 4.36 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.33 Total: -48.24 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -1.00 Total: -21.62 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.67 -9.31 -40.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949355769.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.105 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds