Wall clock time and date at job start Tue Mar 31 2020 21:28:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99805 * 2 1 4 4 C 1.53778 * 113.61216 * 209.99711 * 3 2 1 5 5 C 1.53784 * 87.17399 * 270.84060 * 4 3 2 6 6 C 1.50705 * 113.61605 * 220.06023 * 5 4 3 7 7 O 1.21279 * 119.99679 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99924 * 180.02562 * 6 5 4 9 9 C 1.46936 * 120.64332 * 359.71668 * 8 6 5 10 10 C 1.53621 * 108.53737 * 126.29934 * 9 8 6 11 11 C 1.53000 * 109.27537 * 54.80603 * 10 9 8 12 12 C 1.52985 * 109.63210 * 298.66230 * 11 10 9 13 13 C 1.46926 * 120.64201 * 180.02562 * 8 6 5 14 14 C 1.53254 * 109.36345 * 178.71560 * 11 10 9 15 15 N 1.47152 * 108.41065 * 187.91731 * 14 11 10 16 16 C 1.36939 * 120.98362 * 230.49772 * 15 14 11 17 17 H 1.08001 * 119.99738 * 153.34322 * 16 15 14 18 18 C 1.38813 * 120.00288 * 333.33606 * 16 15 14 19 19 N 1.31613 * 120.00079 * 343.55432 * 18 16 15 20 20 Si 1.86800 * 119.99884 * 163.54765 * 18 16 15 21 21 H 1.48499 * 109.46935 * 60.00461 * 20 18 16 22 22 H 1.48501 * 109.46958 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47449 * 300.00233 * 20 18 16 24 24 C 1.47143 * 118.02804 * 50.47154 * 15 14 11 25 25 C 1.53296 * 108.37461 * 309.41154 * 24 15 14 26 26 O 1.42897 * 109.54731 * 58.91565 * 11 10 9 27 27 C 1.53787 * 113.61378 * 112.50332 * 3 2 1 28 28 H 1.09000 * 109.47195 * 299.99876 * 1 2 3 29 29 H 1.08996 * 109.46994 * 60.00189 * 1 2 3 30 30 H 1.09007 * 109.46938 * 180.02562 * 1 2 3 31 31 H 1.08993 * 112.85243 * 341.19868 * 3 2 1 32 32 H 1.08993 * 113.61765 * 25.43688 * 4 3 2 33 33 H 1.09003 * 113.61458 * 156.25656 * 4 3 2 34 34 H 1.09000 * 113.61004 * 89.15846 * 5 4 3 35 35 H 1.08998 * 109.58795 * 246.13414 * 9 8 6 36 36 H 1.09000 * 109.58641 * 6.55883 * 9 8 6 37 37 H 1.09007 * 109.62973 * 294.80619 * 10 9 8 38 38 H 1.08995 * 109.44862 * 174.69771 * 10 9 8 39 39 H 1.09004 * 109.49108 * 301.23838 * 12 11 10 40 40 H 1.09005 * 109.51130 * 181.18301 * 12 11 10 41 41 H 1.09002 * 109.59022 * 353.43247 * 13 8 6 42 42 H 1.09002 * 109.59010 * 113.71793 * 13 8 6 43 43 H 1.08999 * 109.67908 * 307.64928 * 14 11 10 44 44 H 1.09004 * 109.67667 * 68.14805 * 14 11 10 45 45 H 0.97002 * 120.00655 * 179.97438 * 19 18 16 46 46 H 1.09008 * 109.68452 * 69.12815 * 24 15 14 47 47 H 1.08996 * 109.68964 * 189.68528 * 24 15 14 48 48 H 1.09003 * 109.51445 * 172.27397 * 25 24 15 49 49 H 1.09001 * 109.51467 * 292.42385 * 25 24 15 50 50 H 1.08998 * 113.61568 * 203.66887 * 27 3 2 51 51 H 1.09001 * 113.61417 * 334.48072 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3756 1.3719 -0.7045 5 6 4.0084 1.0343 0.6558 6 6 5.2733 1.8025 0.9405 7 8 5.6957 2.5977 0.1280 8 7 5.9351 1.6058 2.0980 9 6 5.4327 0.6505 3.0949 10 6 6.5593 -0.3364 3.4368 11 6 7.7970 0.4448 3.8826 12 6 8.2743 1.3460 2.7422 13 6 7.1693 2.3476 2.3903 14 6 8.9118 -0.5388 4.2548 15 7 10.0187 0.2201 4.8583 16 6 11.3054 0.0607 4.4175 17 1 12.0167 0.8662 4.5251 18 6 11.6955 -1.1362 3.8326 19 7 10.9569 -2.2148 3.9853 20 14 13.2688 -1.2160 2.8286 21 1 14.4225 -0.8429 3.6859 22 1 13.4589 -2.5964 2.3153 23 1 13.1753 -0.2721 1.6861 24 6 9.7019 1.1556 5.9489 25 6 8.5502 2.0583 5.4920 26 8 7.4729 1.2450 5.0212 27 6 2.7535 1.6489 1.3018 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.3138 2.0788 -0.3237 32 1 3.5171 0.5958 -1.4566 33 1 3.6305 2.3667 -1.0697 34 1 4.1124 -0.0358 0.8354 35 1 5.1276 1.1866 3.9936 36 1 4.5815 0.1075 2.6842 37 1 6.8029 -0.9329 2.5575 38 1 6.2339 -0.9934 4.2433 39 1 8.5045 0.7361 1.8686 40 1 9.1683 1.8858 3.0546 41 1 7.4648 2.9250 1.5143 42 1 7.0010 3.0200 3.2315 43 1 8.5336 -1.2683 4.9709 44 1 9.2629 -1.0516 3.3593 45 1 11.2293 -3.0512 3.5763 46 1 9.4013 0.5976 6.8357 47 1 10.5771 1.7641 6.1767 48 1 8.2087 2.6653 6.3305 49 1 8.8942 2.7083 4.6874 50 1 2.8389 2.7197 1.4864 51 1 2.3917 1.0974 2.1696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000949391822.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:23 Heat of formation + Delta-G solvation = -68.582500 kcal Electronic energy + Delta-G solvation = -31544.364591 eV Core-core repulsion = 27445.739850 eV Total energy + Delta-G solvation = -4098.624740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -40.75700 -39.57726 -38.38844 -36.16048 -35.68593 -34.37504 -32.29133 -31.27078 -30.96877 -28.34965 -27.41805 -26.64149 -25.96157 -25.71318 -23.55682 -23.29627 -22.69499 -21.16054 -20.14286 -19.06544 -18.58469 -17.54369 -16.86307 -16.47070 -16.11357 -15.64830 -15.47802 -15.35579 -15.00995 -14.73459 -14.43679 -14.33769 -13.85116 -13.72006 -13.60108 -13.54688 -13.16584 -12.80333 -12.74144 -12.51539 -12.34215 -12.07791 -11.95356 -11.82104 -11.63043 -11.48825 -11.01381 -10.97416 -10.93407 -10.83273 -10.67893 -10.59844 -10.57395 -10.27669 -10.16724 -9.90930 -9.86158 -9.55940 -9.33779 -8.99898 -8.52311 -8.36409 -6.71369 -5.83760 -3.27272 2.71347 3.15845 3.35046 3.35270 3.41409 3.42428 4.25035 4.32289 4.37252 4.45185 4.51353 4.57922 4.88733 4.96378 5.04756 5.06696 5.12908 5.19506 5.33049 5.34904 5.39129 5.45404 5.49173 5.52830 5.54663 5.64881 5.67781 5.77868 5.83575 5.85571 5.88030 5.96977 5.99645 6.00924 6.17494 6.23942 6.26236 6.39873 6.53835 6.59216 6.71736 6.79922 6.89424 6.90236 7.10271 7.49603 7.59834 7.71305 7.96192 8.31438 8.34604 9.12375 9.75367 10.32730 11.23932 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.002894 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.789762 B = 9673.269930 C =10070.784751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.062 3.938 4 C -0.117 4.117 5 C -0.129 4.129 6 C 0.522 3.478 7 O -0.551 6.551 8 N -0.602 5.602 9 C 0.114 3.886 10 C -0.117 4.117 11 C 0.096 3.904 12 C -0.145 4.145 13 C 0.116 3.884 14 C 0.159 3.841 15 N -0.593 5.593 16 C -0.253 4.253 17 H 0.067 0.933 18 C 0.004 3.996 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.282 1.282 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.110 3.890 25 C 0.046 3.954 26 O -0.382 6.382 27 C -0.140 4.140 28 H 0.042 0.958 29 H 0.042 0.958 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.026 0.974 44 H 0.092 0.908 45 H 0.255 0.745 46 H 0.024 0.976 47 H 0.060 0.940 48 H 0.078 0.922 49 H 0.046 0.954 50 H 0.092 0.908 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.692 6.509 -4.314 21.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.004 3.996 4 C -0.155 4.155 5 C -0.150 4.150 6 C 0.310 3.690 7 O -0.430 6.430 8 N -0.334 5.334 9 C -0.009 4.009 10 C -0.155 4.155 11 C 0.055 3.945 12 C -0.183 4.183 13 C -0.006 4.006 14 C 0.033 3.967 15 N -0.316 5.316 16 C -0.383 4.383 17 H 0.084 0.916 18 C -0.195 4.195 19 N -0.547 5.547 20 Si 0.732 3.268 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.209 1.209 24 C -0.016 4.016 25 C -0.032 4.032 26 O -0.302 6.302 27 C -0.178 4.178 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.124 0.876 34 H 0.135 0.865 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.044 0.956 44 H 0.110 0.890 45 H 0.065 0.935 46 H 0.042 0.958 47 H 0.078 0.922 48 H 0.096 0.904 49 H 0.064 0.936 50 H 0.111 0.889 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.463 6.577 -4.706 21.077 hybrid contribution 1.064 -0.096 -0.361 1.128 sum -18.399 6.481 -5.067 20.155 Atomic orbital electron populations 1.22822 0.80881 1.02865 1.00010 1.87900 1.19740 1.26471 1.94546 1.23074 0.94688 0.85230 0.96637 1.23107 0.92591 1.03929 0.95842 1.22706 0.92031 1.01189 0.99079 1.20463 0.85000 0.82653 0.80860 1.90648 1.68513 1.37303 1.46506 1.48144 1.25572 1.41775 1.17920 1.21809 0.96496 0.90749 0.91852 1.21921 0.94433 0.97363 1.01814 1.22139 0.95443 0.91882 0.84993 1.22315 0.98202 0.98616 0.99200 1.21597 0.83632 0.94320 1.01058 1.21358 0.85453 0.90749 0.99171 1.44033 1.03793 1.47426 1.36375 1.19120 0.87417 0.96728 1.34995 0.91559 1.25027 0.98025 0.94790 1.01657 1.70002 1.39640 0.99268 1.45815 0.86373 0.83184 0.76753 0.80500 1.20855 1.21571 1.20946 1.21583 0.95800 0.92748 0.91503 1.23007 0.89250 0.93091 0.97847 1.87760 1.36716 1.58665 1.47016 1.23407 0.94480 1.01652 0.98227 0.93927 0.93965 0.89511 0.90437 0.90133 0.87635 0.86515 0.90623 0.90152 0.90358 0.90113 0.91211 0.89315 0.89762 0.91632 0.95607 0.88956 0.93492 0.95791 0.92191 0.90354 0.93571 0.88928 0.89956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.29 16 2 O -0.37 -3.54 10.63 -35.23 -0.37 -3.91 16 3 C 0.06 0.55 4.38 -25.92 -0.11 0.43 16 4 C -0.12 -1.22 7.23 -25.92 -0.19 -1.41 16 5 C -0.13 -1.46 2.68 -90.87 -0.24 -1.70 16 6 C 0.52 7.69 7.23 -10.99 -0.08 7.61 16 7 O -0.55 -9.88 15.31 5.56 0.09 -9.80 16 8 N -0.60 -8.79 2.96 -172.47 -0.51 -9.30 16 9 C 0.11 1.47 6.13 -3.48 -0.02 1.45 16 10 C -0.12 -1.79 5.12 -26.41 -0.14 -1.92 16 11 C 0.10 1.77 0.68 -90.50 -0.06 1.71 16 12 C -0.15 -2.62 4.33 -26.62 -0.12 -2.74 16 13 C 0.12 1.85 6.20 -3.69 -0.02 1.83 16 14 C 0.16 3.66 4.09 -3.55 -0.01 3.65 16 15 N -0.59 -14.43 2.55 -171.86 -0.44 -14.87 16 16 C -0.25 -6.77 9.65 -15.06 -0.15 -6.92 16 17 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 18 C 0.00 0.10 4.95 -17.43 -0.09 0.02 16 19 N -0.90 -25.70 11.14 55.49 0.62 -25.08 16 20 Si 0.90 21.50 29.58 -169.99 -5.03 16.47 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 24 C 0.11 2.26 6.73 -3.54 -0.02 2.24 16 25 C 0.05 0.80 6.60 37.31 0.25 1.04 16 26 O -0.38 -6.92 9.00 -35.23 -0.32 -7.24 16 27 C -0.14 -1.28 7.32 -25.83 -0.19 -1.47 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.55 7.87 -51.93 -0.41 0.15 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.11 1.17 7.43 -51.93 -0.39 0.79 16 34 H 0.12 1.28 7.22 -51.93 -0.37 0.91 16 35 H 0.08 0.98 7.82 -51.93 -0.41 0.57 16 36 H 0.08 0.85 5.69 -51.93 -0.30 0.56 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.09 1.75 6.16 -51.93 -0.32 1.43 16 41 H 0.08 1.41 7.01 -51.93 -0.36 1.05 16 42 H 0.07 1.02 7.83 -51.93 -0.41 0.61 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 45 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 47 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 48 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.05 0.79 6.29 -51.93 -0.33 0.46 16 50 H 0.09 0.84 8.09 -51.93 -0.42 0.42 16 51 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 387.95 15.07 5.85 5.85 Total: -1.00 -31.38 387.95 -8.86 -40.24 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -8.64 Total: 2.54 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: -0.10 Total: 5.11 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: -0.33 Total: -49.26 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.61 Total: -20.95 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.38 -8.86 -40.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949391822.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.347 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds