Wall clock time and date at job start Tue Mar 31 2020 21:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 113.99805 * 2 1 4 4 C 1.53778 * 113.61216 * 209.99711 * 3 2 1 5 5 C 1.53784 * 87.17399 * 270.84060 * 4 3 2 6 6 C 1.50705 * 113.61605 * 220.06023 * 5 4 3 7 7 O 1.21279 * 119.99679 * 0.02562 * 6 5 4 8 8 N 1.34771 * 119.99924 * 180.02562 * 6 5 4 9 9 C 1.46936 * 120.64332 * 359.71668 * 8 6 5 10 10 C 1.53621 * 108.53737 * 126.29934 * 9 8 6 11 11 C 1.53000 * 109.27537 * 54.80603 * 10 9 8 12 12 C 1.52985 * 109.63210 * 298.66230 * 11 10 9 13 13 C 1.46926 * 120.64201 * 180.02562 * 8 6 5 14 14 C 1.53254 * 109.36345 * 178.71560 * 11 10 9 15 15 N 1.47152 * 108.41065 * 187.91731 * 14 11 10 16 16 C 1.36939 * 120.98362 * 230.49772 * 15 14 11 17 17 H 1.08001 * 119.99738 * 153.34322 * 16 15 14 18 18 C 1.38813 * 120.00288 * 333.33606 * 16 15 14 19 19 N 1.31613 * 120.00079 * 343.55432 * 18 16 15 20 20 Si 1.86800 * 119.99884 * 163.54765 * 18 16 15 21 21 H 1.48499 * 109.46935 * 60.00461 * 20 18 16 22 22 H 1.48501 * 109.46958 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47449 * 300.00233 * 20 18 16 24 24 C 1.47143 * 118.02804 * 50.47154 * 15 14 11 25 25 C 1.53296 * 108.37461 * 309.41154 * 24 15 14 26 26 O 1.42897 * 109.54731 * 58.91565 * 11 10 9 27 27 C 1.53787 * 113.61378 * 112.50332 * 3 2 1 28 28 H 1.09000 * 109.47195 * 299.99876 * 1 2 3 29 29 H 1.08996 * 109.46994 * 60.00189 * 1 2 3 30 30 H 1.09007 * 109.46938 * 180.02562 * 1 2 3 31 31 H 1.08993 * 112.85243 * 341.19868 * 3 2 1 32 32 H 1.08993 * 113.61765 * 25.43688 * 4 3 2 33 33 H 1.09003 * 113.61458 * 156.25656 * 4 3 2 34 34 H 1.09000 * 113.61004 * 89.15846 * 5 4 3 35 35 H 1.08998 * 109.58795 * 246.13414 * 9 8 6 36 36 H 1.09000 * 109.58641 * 6.55883 * 9 8 6 37 37 H 1.09007 * 109.62973 * 294.80619 * 10 9 8 38 38 H 1.08995 * 109.44862 * 174.69771 * 10 9 8 39 39 H 1.09004 * 109.49108 * 301.23838 * 12 11 10 40 40 H 1.09005 * 109.51130 * 181.18301 * 12 11 10 41 41 H 1.09002 * 109.59022 * 353.43247 * 13 8 6 42 42 H 1.09002 * 109.59010 * 113.71793 * 13 8 6 43 43 H 1.08999 * 109.67908 * 307.64928 * 14 11 10 44 44 H 1.09004 * 109.67667 * 68.14805 * 14 11 10 45 45 H 0.97002 * 120.00655 * 179.97438 * 19 18 16 46 46 H 1.09008 * 109.68452 * 69.12815 * 24 15 14 47 47 H 1.08996 * 109.68964 * 189.68528 * 24 15 14 48 48 H 1.09003 * 109.51445 * 172.27397 * 25 24 15 49 49 H 1.09001 * 109.51467 * 292.42385 * 25 24 15 50 50 H 1.08998 * 113.61568 * 203.66887 * 27 3 2 51 51 H 1.09001 * 113.61417 * 334.48072 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.3756 1.3719 -0.7045 5 6 4.0084 1.0343 0.6558 6 6 5.2733 1.8025 0.9405 7 8 5.6957 2.5977 0.1280 8 7 5.9351 1.6058 2.0980 9 6 5.4327 0.6505 3.0949 10 6 6.5593 -0.3364 3.4368 11 6 7.7970 0.4448 3.8826 12 6 8.2743 1.3460 2.7422 13 6 7.1693 2.3476 2.3903 14 6 8.9118 -0.5388 4.2548 15 7 10.0187 0.2201 4.8583 16 6 11.3054 0.0607 4.4175 17 1 12.0167 0.8662 4.5251 18 6 11.6955 -1.1362 3.8326 19 7 10.9569 -2.2148 3.9853 20 14 13.2688 -1.2160 2.8286 21 1 14.4225 -0.8429 3.6859 22 1 13.4589 -2.5964 2.3153 23 1 13.1753 -0.2721 1.6861 24 6 9.7019 1.1556 5.9489 25 6 8.5502 2.0583 5.4920 26 8 7.4729 1.2450 5.0212 27 6 2.7535 1.6489 1.3018 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.3138 2.0788 -0.3237 32 1 3.5171 0.5958 -1.4566 33 1 3.6305 2.3667 -1.0697 34 1 4.1124 -0.0358 0.8354 35 1 5.1276 1.1866 3.9936 36 1 4.5815 0.1075 2.6842 37 1 6.8029 -0.9329 2.5575 38 1 6.2339 -0.9934 4.2433 39 1 8.5045 0.7361 1.8686 40 1 9.1683 1.8858 3.0546 41 1 7.4648 2.9250 1.5143 42 1 7.0010 3.0200 3.2315 43 1 8.5336 -1.2683 4.9709 44 1 9.2629 -1.0516 3.3593 45 1 11.2293 -3.0512 3.5763 46 1 9.4013 0.5976 6.8357 47 1 10.5771 1.7641 6.1767 48 1 8.2087 2.6653 6.3305 49 1 8.8942 2.7083 4.6874 50 1 2.8389 2.7197 1.4864 51 1 2.3917 1.0974 2.1696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000949391822.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:22 Heat of formation + Delta-G solvation = -88.155274 kcal Electronic energy + Delta-G solvation = -31545.213330 eV Core-core repulsion = 27445.739850 eV Total energy + Delta-G solvation = -4099.473480 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 338.204 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.86814 -40.82454 -39.43450 -37.46225 -36.50799 -36.16494 -33.71751 -33.19452 -32.29375 -29.84821 -28.57178 -27.83568 -26.78361 -26.62939 -25.19663 -24.72025 -24.05957 -22.56781 -21.27029 -20.29617 -19.81381 -18.82278 -18.59638 -17.44775 -17.19396 -16.91218 -16.63646 -16.40581 -16.17516 -15.98238 -15.85875 -15.73508 -15.36034 -15.29883 -14.85416 -14.66911 -14.60109 -14.31685 -13.83800 -13.51664 -13.41959 -13.23135 -13.15134 -13.07366 -12.89627 -12.74917 -12.69555 -12.41446 -12.33984 -12.28287 -12.17528 -12.13196 -11.75001 -11.68662 -11.63296 -11.36829 -11.01436 -10.72574 -10.66852 -10.45190 -10.39632 -9.63515 -8.69141 -7.90329 -5.36776 1.42819 1.45595 1.51436 1.58280 2.02594 2.45718 2.74712 2.90012 3.22998 3.42274 3.54284 3.55221 3.66456 3.76756 3.87918 3.93890 4.01341 4.11133 4.21680 4.30888 4.35614 4.38080 4.44853 4.52484 4.58500 4.59806 4.63961 4.69077 4.75484 4.77472 4.81904 4.85033 4.91127 4.92529 4.95723 4.99619 5.03716 5.08180 5.10358 5.14797 5.20696 5.28253 5.33652 5.52643 5.57507 5.62685 6.29974 6.32198 6.44040 6.45197 7.07773 7.15846 7.77243 8.30582 9.14412 Molecular weight = 338.20amu Principal moments of inertia in cm(-1) A = 0.017134 B = 0.002894 C = 0.002780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.789762 B = 9673.269930 C =10070.784751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.389 6.389 3 C 0.072 3.928 4 C -0.122 4.122 5 C -0.131 4.131 6 C 0.520 3.480 7 O -0.588 6.588 8 N -0.604 5.604 9 C 0.123 3.877 10 C -0.116 4.116 11 C 0.108 3.892 12 C -0.134 4.134 13 C 0.127 3.873 14 C 0.168 3.832 15 N -0.611 5.611 16 C -0.260 4.260 17 H 0.069 0.931 18 C -0.048 4.048 19 N -0.933 5.933 20 Si 0.962 3.038 21 H -0.274 1.274 22 H -0.294 1.294 23 H -0.280 1.280 24 C 0.104 3.896 25 C 0.053 3.947 26 O -0.377 6.377 27 C -0.129 4.129 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.123 0.877 35 H 0.086 0.914 36 H 0.111 0.889 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.077 0.923 43 H -0.003 1.003 44 H 0.058 0.942 45 H 0.250 0.750 46 H 0.016 0.984 47 H 0.067 0.933 48 H 0.117 0.883 49 H 0.050 0.950 50 H 0.095 0.905 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.963 7.722 -4.024 23.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.308 6.308 3 C 0.013 3.987 4 C -0.160 4.160 5 C -0.152 4.152 6 C 0.310 3.690 7 O -0.469 6.469 8 N -0.335 5.335 9 C 0.001 3.999 10 C -0.155 4.155 11 C 0.067 3.933 12 C -0.173 4.173 13 C 0.004 3.996 14 C 0.042 3.958 15 N -0.335 5.335 16 C -0.390 4.390 17 H 0.086 0.914 18 C -0.244 4.244 19 N -0.579 5.579 20 Si 0.791 3.209 21 H -0.200 1.200 22 H -0.220 1.220 23 H -0.207 1.207 24 C -0.021 4.021 25 C -0.025 4.025 26 O -0.297 6.297 27 C -0.167 4.167 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.115 0.885 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.129 0.871 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.096 0.904 43 H 0.015 0.985 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.034 0.966 47 H 0.085 0.915 48 H 0.135 0.865 49 H 0.068 0.932 50 H 0.113 0.887 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.758 7.807 -4.389 23.529 hybrid contribution 1.805 -0.476 -0.403 1.910 sum -19.952 7.331 -4.793 21.790 Atomic orbital electron populations 1.23011 0.79286 1.03833 1.01044 1.87868 1.21543 1.26817 1.94606 1.22982 0.94208 0.85668 0.95794 1.23109 0.94129 1.03240 0.95488 1.22806 0.90971 1.01059 1.00335 1.21099 0.85655 0.82224 0.80046 1.90631 1.69646 1.39054 1.47538 1.48233 1.25008 1.41833 1.18460 1.21877 0.96018 0.89974 0.92033 1.21928 0.93971 0.97765 1.01810 1.21901 0.95158 0.91054 0.85197 1.22147 0.98498 0.98539 0.98112 1.21379 0.83606 0.93668 1.00959 1.21158 0.86571 0.91343 0.96743 1.44298 1.03451 1.47986 1.37754 1.19440 0.88526 0.96606 1.34416 0.91368 1.25735 1.00998 0.94626 1.03019 1.70155 1.41260 0.99529 1.47005 0.85416 0.80146 0.76274 0.79103 1.19994 1.22036 1.20666 1.21783 0.97624 0.92497 0.90213 1.23048 0.87899 0.92343 0.99226 1.87773 1.36736 1.58468 1.46683 1.23393 0.92683 1.01811 0.98845 0.92798 0.93011 0.88697 0.88460 0.90593 0.88563 0.85872 0.89547 0.87125 0.90989 0.89289 0.93320 0.91098 0.90797 0.90447 0.98542 0.92344 0.94088 0.96612 0.91479 0.86502 0.93162 0.88660 0.88540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.85 113.37 1.23 1.47 16 2 O -0.39 -6.45 10.63 -148.98 -1.58 -8.03 16 3 C 0.07 1.07 4.38 31.12 0.14 1.21 16 4 C -0.12 -2.38 7.23 31.12 0.23 -2.16 16 5 C -0.13 -2.69 2.68 -10.95 -0.03 -2.72 16 6 C 0.52 14.65 7.23 87.66 0.63 15.29 16 7 O -0.59 -20.89 15.31 -3.03 -0.05 -20.94 16 8 N -0.60 -16.67 2.96 -817.97 -2.42 -19.09 16 9 C 0.12 2.85 6.13 86.51 0.53 3.38 16 10 C -0.12 -3.45 5.12 30.80 0.16 -3.29 16 11 C 0.11 3.94 0.68 -10.71 -0.01 3.93 16 12 C -0.13 -4.90 4.33 30.67 0.13 -4.76 16 13 C 0.13 3.93 6.20 86.38 0.54 4.46 16 14 C 0.17 8.01 4.09 86.34 0.35 8.37 16 15 N -0.61 -30.33 2.55 -697.63 -1.78 -32.11 16 16 C -0.26 -14.16 9.65 84.03 0.81 -13.35 16 17 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 18 C -0.05 -2.69 4.95 84.86 0.42 -2.27 16 19 N -0.93 -55.06 11.14 21.65 0.24 -54.82 16 20 Si 0.96 45.13 29.58 68.60 2.03 47.16 16 21 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 24 C 0.10 4.23 6.73 86.36 0.58 4.81 16 25 C 0.05 1.70 6.60 72.08 0.48 2.18 16 26 O -0.38 -12.97 9.00 -148.98 -1.34 -14.31 16 27 C -0.13 -1.96 7.32 31.18 0.23 -1.73 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.10 1.08 7.87 -2.39 -0.02 1.06 16 32 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.10 2.07 7.43 -2.39 -0.02 2.05 16 34 H 0.12 2.40 7.22 -2.39 -0.02 2.38 16 35 H 0.09 1.91 7.82 -2.39 -0.02 1.89 16 36 H 0.11 1.95 5.69 -2.39 -0.01 1.93 16 37 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 38 H 0.09 2.51 8.14 -2.39 -0.02 2.50 16 39 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 40 H 0.07 2.82 6.16 -2.38 -0.01 2.81 16 41 H 0.07 2.47 7.01 -2.39 -0.02 2.45 16 42 H 0.08 2.24 7.83 -2.39 -0.02 2.22 16 43 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.06 3.18 6.16 -2.38 -0.01 3.16 16 45 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 46 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 47 H 0.07 2.58 7.96 -2.39 -0.02 2.56 16 48 H 0.12 2.96 8.14 -2.39 -0.02 2.95 16 49 H 0.05 1.62 6.29 -2.39 -0.02 1.61 16 50 H 0.09 1.44 8.09 -2.39 -0.02 1.42 16 51 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -69.83 387.95 2.42 -67.41 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.91 Total: 19.94 kcal Atomic # 6 Polarization: 8.39 SS G_CDS: 6.41 Total: 14.80 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -3.96 Total: -106.02 kcal Atomic # 8 Polarization: -40.31 SS G_CDS: -2.97 Total: -43.29 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -69.83 2.42 -67.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000949391822.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.744 kcal (2) G-P(sol) polarization free energy of solvation -69.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds